Wall clock time and date at job start Tue Mar 31 2020 15:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86800 * 120.00096 * 2 1 4 4 H 1.48495 * 109.46757 * 275.41674 * 3 2 1 5 5 H 1.48502 * 109.46779 * 35.41624 * 3 2 1 6 6 H 1.48501 * 109.46998 * 155.41608 * 3 2 1 7 7 C 1.40005 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00171 * 341.74119 * 7 2 1 9 9 C 1.41023 * 120.00003 * 161.73878 * 7 2 1 10 10 C 1.40980 * 120.10423 * 330.08585 * 9 7 2 11 11 C 1.36230 * 119.92591 * 179.76384 * 10 9 7 12 12 C 1.39936 * 120.14199 * 0.51176 * 11 10 9 13 13 C 1.47971 * 119.89119 * 179.76078 * 12 11 10 14 14 C 1.39641 * 120.13115 * 309.72695 * 13 12 11 15 15 C 1.37926 * 119.89887 * 179.97438 * 14 13 12 16 16 C 1.38370 * 120.17313 * 359.97438 * 15 14 13 17 17 C 1.50705 * 119.86728 * 180.02562 * 16 15 14 18 18 F 1.39900 * 109.46988 * 359.97438 * 17 16 15 19 19 F 1.39900 * 109.47318 * 119.99822 * 17 16 15 20 20 F 1.39900 * 109.47203 * 239.99795 * 17 16 15 21 21 C 1.38595 * 120.27078 * 0.02562 * 16 15 14 22 22 F 1.35096 * 119.95580 * 180.02562 * 21 16 15 23 23 C 1.38179 * 120.09253 * 359.97438 * 21 16 15 24 24 C 1.40136 * 120.21075 * 359.48711 * 12 11 10 25 25 F 1.35102 * 119.96381 * 180.27904 * 24 12 11 26 26 C 1.36483 * 120.07328 * 0.25023 * 24 12 11 27 27 H 0.96997 * 119.99970 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.03019 * 0.04066 * 10 9 7 29 29 H 1.08000 * 119.92782 * 180.27811 * 11 10 9 30 30 H 1.07998 * 120.05198 * 359.97438 * 14 13 12 31 31 H 1.07995 * 119.91307 * 179.71731 * 15 14 13 32 32 H 1.08008 * 120.08914 * 179.97438 * 23 21 16 33 33 H 1.08000 * 120.07604 * 179.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.3750 2.1124 -1.3938 5 1 1.5013 2.6169 0.8114 6 1 3.5921 1.4098 0.5825 7 6 2.0080 -1.2125 0.0005 8 1 1.5088 -2.1242 0.2940 9 6 3.3650 -1.2434 -0.3821 10 6 3.8573 -0.3107 -1.3177 11 6 5.1699 -0.3409 -1.6811 12 6 6.0281 -1.3023 -1.1360 13 6 7.4516 -1.3333 -1.5387 14 6 7.7977 -1.3260 -2.8915 15 6 9.1261 -1.3544 -3.2615 16 6 10.1164 -1.3897 -2.2957 17 6 11.5657 -1.4201 -2.7077 18 9 11.6540 -1.4066 -4.1039 19 9 12.2220 -0.2994 -2.1876 20 9 12.1666 -2.5831 -2.2142 21 6 9.7809 -1.3973 -0.9510 22 9 10.7530 -1.4313 -0.0135 23 6 8.4536 -1.3690 -0.5679 24 6 5.5449 -2.2323 -0.2055 25 9 6.3792 -3.1548 0.3219 26 6 4.2327 -2.2066 0.1688 27 1 -0.4850 0.8400 -0.0004 28 1 3.1955 0.4296 -1.7423 29 1 5.5480 0.3765 -2.3944 30 1 7.0264 -1.2980 -3.6469 31 1 9.3939 -1.3534 -4.3077 32 1 8.1922 -1.3753 0.4801 33 1 3.8602 -2.9235 0.8856 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034051778.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:48 Heat of formation + Delta-G solvation = -215.689890 kcal Electronic energy + Delta-G solvation = -26776.223592 eV Core-core repulsion = 21986.707088 eV Total energy + Delta-G solvation = -4789.516505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.29985 -50.19775 -49.76915 -48.72978 -48.72099 -40.52563 -39.22403 -35.80487 -34.06950 -31.99842 -31.46069 -31.31308 -28.17567 -25.95950 -24.30757 -23.57605 -23.10250 -22.18175 -19.77519 -19.72460 -19.59860 -19.52082 -18.53019 -17.70669 -17.33318 -16.99397 -16.95594 -16.76515 -16.42330 -16.36006 -15.66254 -15.57664 -15.55012 -15.14628 -14.96649 -14.95236 -14.87555 -14.68453 -14.64759 -14.41799 -14.08156 -13.75576 -13.56262 -13.39849 -12.94710 -12.81322 -12.64972 -12.54930 -12.18261 -11.75916 -11.58020 -11.18847 -10.48929 -9.99964 -9.66182 -9.29270 -9.04973 -6.65995 -0.49083 0.03113 0.55477 0.67421 1.27818 1.42735 1.50682 1.52349 2.06921 2.20668 2.47790 2.56091 2.78545 3.00492 3.28173 3.30071 3.53074 3.58214 3.77210 4.06286 4.12163 4.16661 4.47458 4.49499 4.69186 4.73889 4.76974 4.84813 4.97239 5.10570 5.28792 5.39777 5.45086 5.62285 5.66852 5.77564 6.04277 6.20919 6.52597 6.62086 8.01012 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.025177 B = 0.003060 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.849907 B = 9147.900356 C = 9486.836849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.051 3.949 3 Si 0.964 3.036 4 H -0.243 1.243 5 H -0.277 1.277 6 H -0.250 1.250 7 C -0.460 4.460 8 H 0.065 0.935 9 C 0.107 3.893 10 C -0.255 4.255 11 C -0.016 4.016 12 C -0.236 4.236 13 C 0.052 3.948 14 C -0.122 4.122 15 C -0.029 4.029 16 C -0.246 4.246 17 C 0.519 3.481 18 F -0.167 7.167 19 F -0.180 7.180 20 F -0.181 7.181 21 C 0.142 3.858 22 F -0.136 7.136 23 C -0.164 4.164 24 C 0.150 3.850 25 F -0.153 7.153 26 C -0.266 4.266 27 H 0.302 0.698 28 H 0.116 0.884 29 H 0.149 0.851 30 H 0.166 0.834 31 H 0.178 0.822 32 H 0.135 0.865 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.940 2.101 -7.393 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.168 4.168 3 Si 0.786 3.214 4 H -0.168 1.168 5 H -0.204 1.204 6 H -0.174 1.174 7 C -0.487 4.487 8 H 0.083 0.917 9 C 0.103 3.897 10 C -0.274 4.274 11 C -0.034 4.034 12 C -0.238 4.238 13 C 0.051 3.949 14 C -0.140 4.140 15 C -0.047 4.047 16 C -0.249 4.249 17 C 0.465 3.535 18 F -0.148 7.148 19 F -0.161 7.161 20 F -0.163 7.163 21 C 0.122 3.878 22 F -0.114 7.114 23 C -0.182 4.182 24 C 0.131 3.869 25 F -0.132 7.132 26 C -0.286 4.286 27 H 0.113 0.887 28 H 0.133 0.867 29 H 0.166 0.834 30 H 0.183 0.817 31 H 0.195 0.805 32 H 0.153 0.847 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.742 2.132 -7.321 17.491 hybrid contribution 0.151 -0.044 0.915 0.928 sum 15.893 2.087 -6.407 17.263 Atomic orbital electron populations 1.69677 1.09432 1.32468 1.33075 1.26979 0.95366 1.04526 0.89882 0.85503 0.79697 0.75795 0.80446 1.16756 1.20356 1.17383 1.19603 0.94141 0.96135 1.38846 0.91707 1.17640 0.92129 0.90708 0.89205 1.20938 0.96894 1.05207 1.04321 1.20603 0.91505 0.95134 0.96145 1.18131 0.93124 1.04231 1.08274 1.18760 0.91101 0.91671 0.93330 1.21628 0.96627 1.00756 0.94998 1.21118 0.90722 0.92699 1.00135 1.20122 0.93004 1.17893 0.93842 1.17975 0.86943 0.73666 0.74944 1.93173 1.96710 1.96200 1.28697 1.93216 1.83312 1.52852 1.86744 1.93216 1.85628 1.49705 1.87702 1.17214 0.85580 1.00331 0.84646 1.91524 1.61812 1.93534 1.64545 1.21295 0.90004 1.05414 1.01532 1.17363 0.87530 0.87953 0.94084 1.91397 1.71769 1.64776 1.85278 1.20751 0.92261 1.07431 1.08165 0.88727 0.86685 0.83375 0.81686 0.80482 0.84660 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.34 13.93 21.84 0.30 -40.04 16 2 C 0.05 2.44 5.40 85.27 0.46 2.90 16 3 Si 0.96 37.01 24.51 68.60 1.68 38.69 16 4 H -0.24 -8.43 6.70 99.48 0.67 -7.76 16 5 H -0.28 -10.15 7.11 99.48 0.71 -9.45 16 6 H -0.25 -9.91 6.87 99.48 0.68 -9.22 16 7 C -0.46 -23.15 9.55 23.38 0.22 -22.93 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 9 C 0.11 4.86 5.10 -21.28 -0.11 4.75 16 10 C -0.25 -10.17 7.11 22.47 0.16 -10.01 16 11 C -0.02 -0.54 9.44 22.21 0.21 -0.33 16 12 C -0.24 -8.18 5.50 -19.82 -0.11 -8.29 16 13 C 0.05 1.50 5.31 -20.04 -0.11 1.39 16 14 C -0.12 -2.71 9.51 22.53 0.21 -2.50 16 15 C -0.03 -0.57 9.41 22.23 0.21 -0.36 16 16 C -0.25 -5.88 5.39 -19.75 -0.11 -5.99 16 17 C 0.52 11.93 3.02 71.24 0.22 12.15 16 18 F -0.17 -3.31 15.96 44.97 0.72 -2.59 16 19 F -0.18 -4.41 17.04 44.97 0.77 -3.64 16 20 F -0.18 -4.53 17.04 44.97 0.77 -3.76 16 21 C 0.14 3.93 7.12 22.34 0.16 4.09 16 22 F -0.14 -3.94 16.44 44.97 0.74 -3.20 16 23 C -0.16 -4.82 8.84 22.57 0.20 -4.62 16 24 C 0.15 5.92 7.10 22.32 0.16 6.08 16 25 F -0.15 -5.87 15.86 44.97 0.71 -5.16 16 26 C -0.27 -11.60 9.70 22.50 0.22 -11.38 16 27 H 0.30 13.09 8.30 -92.71 -0.77 12.32 16 28 H 0.12 4.44 4.73 -2.91 -0.01 4.43 16 29 H 0.15 3.82 8.04 -2.91 -0.02 3.80 16 30 H 0.17 2.91 8.04 -2.91 -0.02 2.88 16 31 H 0.18 2.30 7.14 -2.91 -0.02 2.28 16 32 H 0.14 4.14 7.78 -2.91 -0.02 4.11 16 33 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -51.89 309.08 8.82 -43.07 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.14 Total: 11.68 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 2.00 Total: -35.06 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.30 Total: -40.04 kcal Atomic # 9 Polarization: -22.05 SS G_CDS: 3.70 Total: -18.34 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 1.68 Total: 38.69 kcal Total: -51.89 8.82 -43.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034051778.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.619 kcal (2) G-P(sol) polarization free energy of solvation -51.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds