Wall clock time and date at job start Tue Mar 31 2020 15:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46728 * 2 1 4 4 N 1.46498 * 109.47120 * 119.99570 * 2 1 3 5 5 C 1.35599 * 125.68345 * 294.98063 * 4 2 1 6 6 C 1.35501 * 108.85765 * 180.26855 * 5 4 2 7 7 Br 1.89106 * 126.06888 * 179.75481 * 6 5 4 8 8 C 1.39871 * 107.85598 * 359.72708 * 6 5 4 9 9 C 1.37642 * 125.67241 * 114.78490 * 4 2 1 10 10 C 1.46673 * 126.22471 * 359.97438 * 9 4 2 11 11 O 1.21694 * 120.00293 * 352.56588 * 10 9 4 12 12 N 1.34777 * 119.99970 * 172.84324 * 10 9 4 13 13 C 1.46494 * 119.99972 * 354.40848 * 12 10 9 14 14 C 1.46503 * 120.00027 * 174.40155 * 12 10 9 15 15 C 1.50701 * 109.46524 * 90.00372 * 14 12 10 16 16 H 1.07997 * 120.00789 * 359.97438 * 15 14 12 17 17 C 1.37879 * 119.99873 * 179.97438 * 15 14 12 18 18 N 1.31519 * 119.99995 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00036 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47336 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46862 * 120.00259 * 19 17 15 22 22 H 1.48504 * 109.47264 * 239.99926 * 19 17 15 23 23 H 1.09000 * 109.47366 * 300.00014 * 1 2 3 24 24 H 1.09003 * 109.47232 * 60.00176 * 1 2 3 25 25 H 1.08998 * 109.46752 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47244 * 240.00470 * 2 1 3 27 27 H 1.08996 * 109.46874 * 60.00244 * 3 2 1 28 28 H 1.09000 * 109.46815 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47120 * 299.99893 * 3 2 1 30 30 H 1.08006 * 125.56439 * 359.97438 * 5 4 2 31 31 H 1.08003 * 126.45870 * 179.97438 * 8 6 5 32 32 H 1.09000 * 109.47619 * 85.50909 * 13 12 10 33 33 H 1.09003 * 109.47120 * 205.50257 * 13 12 10 34 34 H 1.08995 * 109.47173 * 325.50613 * 13 12 10 35 35 H 1.09000 * 109.47049 * 210.00022 * 14 12 10 36 36 H 1.08998 * 109.47087 * 330.00448 * 14 12 10 37 37 H 0.97004 * 119.99925 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.8435 -0.2762 2.4755 6 6 2.4371 -1.1647 3.3086 7 35 2.4934 -1.0555 5.1957 8 6 3.0002 -2.1773 2.5251 9 6 2.7278 -1.8699 1.2088 10 6 3.1265 -2.6542 0.0352 11 8 2.7155 -2.3490 -1.0689 12 7 3.9435 -3.7162 0.1802 13 6 4.5314 -4.0148 1.4883 14 6 4.2436 -4.5721 -0.9703 15 6 5.4650 -4.0482 -1.6809 16 1 5.9672 -3.1659 -1.3127 17 6 5.9413 -4.6955 -2.8013 18 7 5.3295 -5.7697 -3.2501 19 14 7.4549 -4.0458 -3.6826 20 1 7.9527 -2.8340 -2.9835 21 1 8.5134 -5.0873 -3.6815 22 1 7.1020 -3.7001 -5.0830 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.3208 0.6186 2.7801 31 1 3.5461 -3.0375 2.8834 32 1 3.8331 -4.6144 2.0723 33 1 5.4599 -4.5692 1.3514 34 1 4.7387 -3.0832 2.0147 35 1 4.4313 -5.5895 -0.6272 36 1 3.3958 -4.5702 -1.6555 37 1 5.6649 -6.2253 -4.0381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036860121.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:38 Heat of formation + Delta-G solvation = 28.572720 kcal Electronic energy + Delta-G solvation = -20489.936249 eV Core-core repulsion = 17315.221332 eV Total energy + Delta-G solvation = -3174.714917 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.52291 -38.48209 -35.81700 -34.70587 -32.69586 -31.52002 -29.84474 -28.68398 -27.45060 -27.32659 -26.18255 -23.48999 -22.22961 -21.03984 -20.15775 -18.37362 -16.79581 -16.55086 -15.65311 -15.24780 -15.22158 -14.74760 -14.32723 -14.09818 -14.03373 -13.10102 -12.93844 -12.92595 -12.52960 -12.44020 -12.36419 -12.25713 -12.16472 -11.54874 -11.37281 -11.11433 -11.00975 -10.82563 -10.73761 -10.55974 -10.16902 -10.15950 -9.65794 -9.06914 -8.55254 -8.46379 -8.14481 -7.70171 -6.07091 -4.11684 1.71296 1.79462 2.51745 2.85053 3.28497 3.35983 3.40499 3.84094 3.97433 4.43004 4.58641 4.84279 4.85825 5.01053 5.13212 5.26985 5.27855 5.34559 5.48582 5.54208 5.67276 5.70785 5.81251 5.88363 5.90433 6.02182 6.06379 6.24312 6.57639 6.91546 7.03550 7.20466 7.36710 7.47042 7.89004 8.18606 8.30235 8.83220 8.98740 9.53316 11.01030 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.003851 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.628756 B = 7269.158045 C = 8358.261895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.104 3.896 3 C -0.160 4.160 4 N -0.394 5.394 5 C 0.044 3.956 6 C -0.179 4.179 7 Br -0.042 7.042 8 C -0.144 4.144 9 C -0.017 4.017 10 C 0.573 3.427 11 O -0.546 6.546 12 N -0.582 5.582 13 C 0.064 3.936 14 C 0.247 3.753 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.138 0.862 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.169 0.831 31 H 0.172 0.828 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.044 0.956 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.242 11.794 15.950 21.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.003 3.997 3 C -0.217 4.217 4 N -0.067 5.067 5 C -0.095 4.095 6 C -0.264 4.264 7 Br 0.042 6.958 8 C -0.170 4.170 9 C -0.132 4.132 10 C 0.361 3.639 11 O -0.426 6.426 12 N -0.312 5.312 13 C -0.080 4.080 14 C 0.129 3.871 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.077 0.923 24 H 0.095 0.905 25 H 0.084 0.916 26 H 0.156 0.844 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.186 0.814 31 H 0.189 0.811 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.524 11.977 15.538 21.390 hybrid contribution 0.841 0.297 -0.791 1.192 sum -7.683 12.275 14.747 20.668 Atomic orbital electron populations 1.22126 0.93422 1.03261 1.02658 1.22064 0.95450 0.94115 0.88095 1.22157 1.02400 0.94307 1.02862 1.44264 1.39044 1.17319 1.06032 1.21607 1.04556 1.00871 0.82472 1.20907 1.13264 1.02486 0.89779 1.96541 1.98547 1.98649 1.02110 1.22165 1.03679 1.00889 0.90279 1.20543 1.05818 0.91581 0.95267 1.16862 0.80031 0.80868 0.86188 1.90698 1.57075 1.68538 1.26292 1.47854 1.44345 1.27320 1.11692 1.22356 0.98933 1.01412 0.85262 1.19382 0.97213 0.88450 0.82090 1.21448 1.11314 1.12182 1.11426 0.92320 1.24928 0.97429 0.94902 0.96796 1.69943 1.40248 1.18907 1.24285 0.86437 0.82505 0.78843 0.79614 1.19802 1.20916 1.20881 0.92297 0.90489 0.91589 0.84432 0.92166 0.91614 0.90371 0.81365 0.81096 0.93023 0.90484 0.90502 0.94521 0.93748 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.30 37.16 0.35 -1.34 16 2 C 0.10 1.37 3.44 -67.93 -0.23 1.14 16 3 C -0.16 -1.67 9.16 37.16 0.34 -1.33 16 4 N -0.39 -5.79 2.64 -105.77 -0.28 -6.07 16 5 C 0.04 0.55 10.30 -16.86 -0.17 0.38 16 6 C -0.18 -2.39 6.53 -39.95 -0.26 -2.66 16 7 Br -0.04 -0.48 34.08 -68.01 -2.32 -2.80 16 8 C -0.14 -2.15 8.73 -39.10 -0.34 -2.49 16 9 C -0.02 -0.30 6.73 -81.98 -0.55 -0.85 16 10 C 0.57 12.26 7.62 -12.85 -0.10 12.16 16 11 O -0.55 -13.33 14.04 5.19 0.07 -13.26 16 12 N -0.58 -12.50 2.86 -184.52 -0.53 -13.02 16 13 C 0.06 1.04 8.66 59.84 0.52 1.56 16 14 C 0.25 6.40 5.10 -5.19 -0.03 6.38 16 15 C -0.52 -14.77 9.39 -34.44 -0.32 -15.09 16 16 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 19 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H 0.06 0.53 8.01 -51.93 -0.42 0.12 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.14 2.31 5.42 -51.93 -0.28 2.03 16 27 H 0.06 0.52 7.71 -51.93 -0.40 0.12 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.17 1.62 7.91 -52.48 -0.42 1.20 16 31 H 0.17 2.30 4.39 -52.48 -0.23 2.07 16 32 H 0.05 0.72 7.46 -51.93 -0.39 0.33 16 33 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 34 H 0.08 1.13 5.13 -51.93 -0.27 0.86 16 35 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 36 H 0.04 1.28 7.50 -51.93 -0.39 0.89 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 326.52 15.07 4.92 4.92 Total: -1.00 -31.77 326.52 -8.18 -39.95 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -4.86 Total: -0.37 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -0.90 Total: -0.51 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.07 Total: -44.65 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.07 Total: -13.26 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.32 Total: -2.80 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.77 -8.18 -39.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036860121.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.524 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds