Wall clock time and date at job start Tue Mar 31 2020 15:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46728 * 2 1 4 4 N 1.46498 * 109.47120 * 119.99570 * 2 1 3 5 5 C 1.35599 * 125.68345 * 294.98063 * 4 2 1 6 6 C 1.35501 * 108.85765 * 180.26855 * 5 4 2 7 7 Br 1.89106 * 126.06888 * 179.75481 * 6 5 4 8 8 C 1.39871 * 107.85598 * 359.72708 * 6 5 4 9 9 C 1.37642 * 125.67241 * 114.78490 * 4 2 1 10 10 C 1.46673 * 126.22471 * 359.97438 * 9 4 2 11 11 O 1.21694 * 120.00293 * 352.56588 * 10 9 4 12 12 N 1.34777 * 119.99970 * 172.84324 * 10 9 4 13 13 C 1.46494 * 119.99972 * 354.40848 * 12 10 9 14 14 C 1.46503 * 120.00027 * 174.40155 * 12 10 9 15 15 C 1.50701 * 109.46524 * 90.00372 * 14 12 10 16 16 H 1.07997 * 120.00789 * 359.97438 * 15 14 12 17 17 C 1.37879 * 119.99873 * 179.97438 * 15 14 12 18 18 N 1.31519 * 119.99995 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00036 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47336 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46862 * 120.00259 * 19 17 15 22 22 H 1.48504 * 109.47264 * 239.99926 * 19 17 15 23 23 H 1.09000 * 109.47366 * 300.00014 * 1 2 3 24 24 H 1.09003 * 109.47232 * 60.00176 * 1 2 3 25 25 H 1.08998 * 109.46752 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47244 * 240.00470 * 2 1 3 27 27 H 1.08996 * 109.46874 * 60.00244 * 3 2 1 28 28 H 1.09000 * 109.46815 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47120 * 299.99893 * 3 2 1 30 30 H 1.08006 * 125.56439 * 359.97438 * 5 4 2 31 31 H 1.08003 * 126.45870 * 179.97438 * 8 6 5 32 32 H 1.09000 * 109.47619 * 85.50909 * 13 12 10 33 33 H 1.09003 * 109.47120 * 205.50257 * 13 12 10 34 34 H 1.08995 * 109.47173 * 325.50613 * 13 12 10 35 35 H 1.09000 * 109.47049 * 210.00022 * 14 12 10 36 36 H 1.08998 * 109.47087 * 330.00448 * 14 12 10 37 37 H 0.97004 * 119.99925 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.8435 -0.2762 2.4755 6 6 2.4371 -1.1647 3.3086 7 35 2.4934 -1.0555 5.1957 8 6 3.0002 -2.1773 2.5251 9 6 2.7278 -1.8699 1.2088 10 6 3.1265 -2.6542 0.0352 11 8 2.7155 -2.3490 -1.0689 12 7 3.9435 -3.7162 0.1802 13 6 4.5314 -4.0148 1.4883 14 6 4.2436 -4.5721 -0.9703 15 6 5.4650 -4.0482 -1.6809 16 1 5.9672 -3.1659 -1.3127 17 6 5.9413 -4.6955 -2.8013 18 7 5.3295 -5.7697 -3.2501 19 14 7.4549 -4.0458 -3.6826 20 1 7.9527 -2.8340 -2.9835 21 1 8.5134 -5.0873 -3.6815 22 1 7.1020 -3.7001 -5.0830 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.3208 0.6186 2.7801 31 1 3.5461 -3.0375 2.8834 32 1 3.8331 -4.6144 2.0723 33 1 5.4599 -4.5692 1.3514 34 1 4.7387 -3.0832 2.0147 35 1 4.4313 -5.5895 -0.6272 36 1 3.3958 -4.5702 -1.6555 37 1 5.6649 -6.2253 -4.0381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036860121.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:37 Heat of formation + Delta-G solvation = 9.857479 kcal Electronic energy + Delta-G solvation = -20490.747803 eV Core-core repulsion = 17315.221332 eV Total energy + Delta-G solvation = -3175.526471 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.69541 -40.10253 -37.12559 -36.16547 -34.76838 -32.53830 -31.31701 -29.79098 -29.03086 -28.25937 -27.73613 -25.36118 -23.37140 -22.38707 -21.48204 -19.65991 -18.73174 -18.04522 -17.21494 -16.85813 -16.59408 -16.09114 -15.82639 -15.52729 -15.06103 -14.60462 -14.30971 -14.08670 -13.84974 -13.81911 -13.73624 -13.40388 -13.16999 -13.13950 -12.93500 -12.66062 -12.48046 -12.30268 -12.17061 -11.93200 -11.74032 -11.69435 -11.15654 -10.67010 -10.65758 -9.66879 -9.57388 -9.18310 -8.23991 -6.38566 0.44835 0.77941 1.35913 1.37568 1.43030 1.49767 1.68415 2.28688 2.40144 2.49420 3.05680 3.57907 3.65923 3.92448 3.93236 4.16832 4.20303 4.33559 4.50523 4.59765 4.61232 4.63710 4.73751 4.78824 4.89253 4.92975 5.00941 5.08829 5.16974 5.17341 5.46806 5.54145 5.77244 5.81142 6.02676 6.14081 6.62844 6.70228 7.21913 7.36960 8.83273 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.003851 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.628756 B = 7269.158045 C = 8358.261895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.096 3.904 3 C -0.151 4.151 4 N -0.396 5.396 5 C 0.069 3.931 6 C -0.194 4.194 7 Br -0.018 7.018 8 C -0.128 4.128 9 C -0.059 4.059 10 C 0.565 3.435 11 O -0.593 6.593 12 N -0.593 5.593 13 C 0.062 3.938 14 C 0.263 3.737 15 C -0.541 4.541 16 H 0.050 0.950 17 C 0.011 3.989 18 N -0.927 5.927 19 Si 0.967 3.033 20 H -0.270 1.270 21 H -0.268 1.268 22 H -0.280 1.280 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.041 0.959 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.094 0.906 30 H 0.208 0.792 31 H 0.184 0.816 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.031 0.969 36 H 0.001 0.999 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.203 13.847 18.141 24.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.004 4.004 3 C -0.209 4.209 4 N -0.069 5.069 5 C -0.071 4.071 6 C -0.279 4.279 7 Br 0.066 6.934 8 C -0.154 4.154 9 C -0.173 4.173 10 C 0.355 3.645 11 O -0.477 6.477 12 N -0.322 5.322 13 C -0.080 4.080 14 C 0.142 3.858 15 C -0.580 4.580 16 H 0.068 0.932 17 C -0.188 4.188 18 N -0.566 5.566 19 Si 0.792 3.208 20 H -0.194 1.194 21 H -0.193 1.193 22 H -0.206 1.206 23 H 0.104 0.896 24 H 0.112 0.888 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.225 0.775 31 H 0.200 0.800 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.049 0.951 36 H 0.019 0.981 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.476 14.021 17.768 24.169 hybrid contribution 0.757 -0.312 -1.372 1.597 sum -7.719 13.708 16.397 22.723 Atomic orbital electron populations 1.22089 0.91348 1.02373 1.04831 1.22110 0.97055 0.95023 0.86252 1.22125 1.01149 0.92501 1.05084 1.44442 1.38567 1.16611 1.07252 1.22256 1.02561 1.01159 0.81121 1.21070 1.13403 1.02185 0.91243 1.96573 1.98526 1.98580 0.99721 1.22332 1.02418 1.01247 0.89424 1.19977 1.09535 0.93475 0.94288 1.17454 0.79203 0.80733 0.87071 1.90667 1.58672 1.69806 1.28506 1.47816 1.45034 1.27112 1.12253 1.22616 0.99266 1.02855 0.83227 1.18848 0.94830 0.89015 0.83063 1.21664 1.12037 1.12008 1.12260 0.93197 1.25815 1.00560 0.95036 0.97431 1.70050 1.41802 1.19964 1.24825 0.85373 0.78839 0.78557 0.78063 1.19433 1.19262 1.20599 0.89585 0.88799 0.93971 0.88868 0.89366 0.93495 0.88700 0.77544 0.79967 0.90240 0.90736 0.88551 0.95088 0.98054 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.30 71.98 0.67 -2.33 16 2 C 0.10 2.53 3.44 44.99 0.15 2.68 16 3 C -0.15 -2.87 9.16 71.98 0.66 -2.21 16 4 N -0.40 -11.25 2.64 -488.56 -1.29 -12.54 16 5 C 0.07 1.52 10.30 83.48 0.86 2.38 16 6 C -0.19 -4.64 6.53 22.03 0.14 -4.49 16 7 Br -0.02 -0.35 34.08 -20.37 -0.69 -1.04 16 8 C -0.13 -3.60 8.73 22.58 0.20 -3.41 16 9 C -0.06 -2.05 6.73 40.35 0.27 -1.78 16 10 C 0.57 25.42 7.62 86.45 0.66 26.08 16 11 O -0.59 -31.23 14.04 -4.33 -0.06 -31.29 16 12 N -0.59 -26.54 2.86 -855.90 -2.44 -28.98 16 13 C 0.06 2.01 8.66 127.77 1.11 3.11 16 14 C 0.26 14.42 5.10 85.63 0.44 14.86 16 15 C -0.54 -31.62 9.39 25.60 0.24 -31.38 16 16 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 17 C 0.01 0.62 5.46 84.65 0.46 1.08 16 18 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 19 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H 0.09 1.25 8.01 -2.39 -0.02 1.23 16 24 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.09 3.35 5.42 -2.39 -0.01 3.34 16 27 H 0.09 1.18 7.71 -2.39 -0.02 1.16 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.21 2.87 7.91 -2.91 -0.02 2.85 16 31 H 0.18 4.53 4.39 -2.91 -0.01 4.52 16 32 H 0.08 2.12 7.46 -2.39 -0.02 2.10 16 33 H 0.07 2.43 8.04 -2.39 -0.02 2.41 16 34 H 0.10 2.73 5.13 -2.39 -0.01 2.72 16 35 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 36 H 0.00 0.08 7.50 -2.39 -0.02 0.07 16 37 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -73.04 326.52 4.76 -68.28 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.08 Total: 9.44 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 5.86 Total: 4.60 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -3.45 Total: -97.21 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.06 Total: -31.29 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -0.69 Total: -1.04 kcal Total: -73.04 4.76 -68.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036860121.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.134 kcal (2) G-P(sol) polarization free energy of solvation -73.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds