Wall clock time and date at job start Tue Mar 31 2020 15:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47524 * 2 1 4 4 C 1.52998 * 109.46867 * 119.99811 * 2 1 3 5 5 N 1.46501 * 109.47203 * 174.99783 * 4 2 1 6 6 C 1.46502 * 120.00039 * 95.78097 * 5 4 2 7 7 C 1.50693 * 109.47079 * 92.43457 * 6 5 4 8 8 H 1.08003 * 120.00601 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00043 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99847 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00066 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47347 * 89.99582 * 11 9 7 13 13 H 1.48497 * 109.46857 * 209.99779 * 11 9 7 14 14 H 1.48500 * 109.46870 * 329.99486 * 11 9 7 15 15 C 1.34771 * 120.00142 * 275.78122 * 5 4 2 16 16 O 1.21697 * 120.00209 * 4.37265 * 15 5 4 17 17 C 1.46677 * 120.00231 * 184.37106 * 15 5 4 18 18 C 1.37885 * 126.22347 * 187.49131 * 17 15 5 19 19 C 1.39877 * 107.08894 * 179.85029 * 18 17 15 20 20 Br 1.89105 * 126.07639 * 180.16139 * 19 18 17 21 21 C 1.35507 * 107.85315 * 0.41063 * 19 18 17 22 22 N 1.35599 * 108.85667 * 359.74926 * 21 19 18 23 23 H 0.96996 * 125.67355 * 179.97438 * 22 21 19 24 24 H 1.09005 * 109.47126 * 300.00843 * 1 2 3 25 25 H 1.09007 * 109.46417 * 59.99848 * 1 2 3 26 26 H 1.08991 * 109.47314 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46958 * 239.99682 * 2 1 3 28 28 H 1.08999 * 109.47304 * 59.99125 * 3 2 1 29 29 H 1.08995 * 109.47320 * 180.02562 * 3 2 1 30 30 H 1.09009 * 109.46857 * 300.00086 * 3 2 1 31 31 H 1.09002 * 109.47405 * 54.99782 * 4 2 1 32 32 H 1.09001 * 109.47566 * 294.99688 * 4 2 1 33 33 H 1.08995 * 109.47252 * 212.43561 * 6 5 4 34 34 H 1.09007 * 109.46890 * 332.43666 * 6 5 4 35 35 H 0.96998 * 119.99503 * 179.97438 * 10 9 7 36 36 H 1.07994 * 126.45511 * 359.97438 * 18 17 15 37 37 H 1.07996 * 125.57262 * 179.76013 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.3340 0.1677 1.8708 7 6 4.6594 -0.3158 3.2604 8 1 4.2823 -1.2681 3.6031 9 6 5.4376 0.4581 4.0950 10 7 5.8963 1.6180 3.6781 11 14 5.8415 -0.1415 5.8175 12 1 7.0993 -0.9302 5.7848 13 1 6.0121 1.0250 6.7203 14 1 4.7343 -0.9960 6.3164 15 6 4.0760 -1.8377 0.5111 16 8 3.3867 -2.6174 -0.1197 17 6 5.5338 -1.9986 0.5316 18 6 6.2660 -2.8889 -0.2251 19 6 7.6117 -2.7014 0.1075 20 35 9.0804 -3.6445 -0.6200 21 6 7.6754 -1.7277 1.0478 22 7 6.4190 -1.2926 1.3141 23 1 6.1834 -0.5995 1.9504 24 1 -0.3633 0.5140 0.8899 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6053 -1.7198 1.2953 32 1 1.7517 -0.1583 2.1370 33 1 5.2578 0.3115 1.3105 34 1 3.7951 1.1133 1.9319 35 1 6.4434 2.1626 4.2654 36 1 5.8745 -3.5961 -0.9412 37 1 8.5792 -1.3584 1.5095 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037496675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:06 Heat of formation + Delta-G solvation = 6.684326 kcal Electronic energy + Delta-G solvation = -20832.085869 eV Core-core repulsion = 17656.421800 eV Total energy + Delta-G solvation = -3175.664069 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.94500 -38.73050 -36.14626 -34.51486 -32.65630 -31.60445 -29.53068 -28.62637 -27.72069 -26.85296 -25.63981 -23.46201 -21.46330 -20.27978 -19.49923 -19.23722 -17.17949 -16.72490 -15.65866 -15.58200 -14.82023 -14.67280 -14.20068 -13.89124 -13.43479 -12.99681 -12.93872 -12.68653 -12.53094 -12.25972 -12.15002 -11.99290 -11.59969 -11.52376 -11.23604 -11.10094 -10.81393 -10.66985 -10.60324 -10.43995 -10.25664 -10.04067 -9.87935 -9.36333 -8.96988 -8.32713 -7.99019 -7.66989 -6.59208 -4.73708 2.08963 2.19242 2.89432 3.00855 3.10304 3.14107 3.67171 3.95790 4.00318 4.17649 4.71354 5.15209 5.24798 5.36131 5.40064 5.56385 5.74937 5.83501 5.90425 5.97010 6.09961 6.14880 6.18958 6.29497 6.34146 6.34956 6.37083 6.60017 6.67077 6.80280 6.99616 7.18873 7.34691 7.42679 7.58087 8.07682 8.15354 8.43624 8.83240 8.98892 10.42654 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.005170 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.041796 B = 5414.856622 C = 7467.623386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.145 4.145 4 C 0.129 3.871 5 N -0.593 5.593 6 C 0.216 3.784 7 C -0.563 4.563 8 H 0.071 0.929 9 C 0.066 3.934 10 N -0.880 5.880 11 Si 0.899 3.101 12 H -0.274 1.274 13 H -0.280 1.280 14 H -0.268 1.268 15 C 0.587 3.413 16 O -0.558 6.558 17 C -0.027 4.027 18 C -0.105 4.105 19 C -0.189 4.189 20 Br -0.052 7.052 21 C 0.045 3.955 22 N -0.500 5.500 23 H 0.454 0.546 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.053 0.947 35 H 0.274 0.726 36 H 0.147 0.853 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 -3.053 -5.496 6.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.202 4.202 4 C 0.006 3.994 5 N -0.323 5.323 6 C 0.095 3.905 7 C -0.601 4.601 8 H 0.089 0.911 9 C -0.140 4.140 10 N -0.516 5.516 11 Si 0.725 3.275 12 H -0.199 1.199 13 H -0.205 1.205 14 H -0.193 1.193 15 C 0.376 3.624 16 O -0.438 6.438 17 C -0.144 4.144 18 C -0.133 4.133 19 C -0.275 4.275 20 Br 0.032 6.968 21 C -0.099 4.099 22 N -0.109 5.109 23 H 0.314 0.686 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.164 0.836 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.856 -3.400 -5.839 7.007 hybrid contribution 0.033 0.400 1.534 1.586 sum 1.889 -3.000 -4.305 5.577 Atomic orbital electron populations 1.21744 0.95181 1.01541 1.01420 1.21502 0.95386 0.96760 0.99605 1.21866 1.01830 0.95555 1.00965 1.21388 0.79948 1.00682 0.97360 1.48026 1.06800 1.26983 1.50450 1.19859 0.90637 0.88429 0.91592 1.21694 1.33532 1.06300 0.98611 0.91090 1.25104 0.95264 0.94426 0.99238 1.69926 1.33414 1.10727 1.37538 0.86427 0.79365 0.78751 0.82931 1.19934 1.20527 1.19289 1.17034 0.85294 0.80849 0.79190 1.90736 1.63303 1.45159 1.44574 1.20374 0.90591 1.01501 1.01927 1.20943 0.90185 1.00364 1.01763 1.20800 0.92407 1.06152 1.08132 1.96465 1.40626 1.75057 1.84689 1.21904 0.89627 0.98413 0.99964 1.44415 1.04767 1.30370 1.31394 0.68551 0.92754 0.92919 0.92728 0.90861 0.92714 0.92152 0.93477 0.91110 0.90215 0.94623 0.92877 0.91607 0.83561 0.81287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.19 37.16 0.34 -1.43 16 2 C -0.11 -1.75 3.08 -90.62 -0.28 -2.03 16 3 C -0.14 -2.19 8.35 37.16 0.31 -1.88 16 4 C 0.13 2.29 4.74 -4.04 -0.02 2.27 16 5 N -0.59 -12.03 2.19 -176.61 -0.39 -12.42 16 6 C 0.22 4.67 3.69 -5.20 -0.02 4.66 16 7 C -0.56 -13.12 7.39 -34.44 -0.25 -13.38 16 8 H 0.07 1.74 7.81 -52.48 -0.41 1.33 16 9 C 0.07 1.54 5.08 -17.82 -0.09 1.45 16 10 N -0.88 -21.23 13.29 55.43 0.74 -20.49 16 11 Si 0.90 18.75 29.54 -169.99 -5.02 13.73 16 12 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 13 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 14 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 15 C 0.59 12.64 7.58 -12.86 -0.10 12.54 16 16 O -0.56 -12.73 16.50 5.19 0.09 -12.65 16 17 C -0.03 -0.56 6.63 -81.98 -0.54 -1.11 16 18 C -0.11 -2.00 10.64 -39.10 -0.42 -2.41 16 19 C -0.19 -3.30 6.53 -39.94 -0.26 -3.56 16 20 Br -0.05 -0.76 34.08 -68.01 -2.32 -3.07 16 21 C 0.04 0.79 11.86 -16.86 -0.20 0.59 16 22 N -0.50 -10.05 4.83 -9.36 -0.05 -10.09 16 23 H 0.45 9.71 3.31 -40.82 -0.14 9.58 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.26 8.03 -51.93 -0.42 0.85 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 1.03 6.39 -51.93 -0.33 0.69 16 30 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 31 H 0.07 1.27 7.67 -51.93 -0.40 0.87 16 32 H 0.08 1.37 8.03 -51.93 -0.42 0.96 16 33 H 0.04 0.81 5.16 -51.93 -0.27 0.54 16 34 H 0.05 1.19 6.75 -51.93 -0.35 0.84 16 35 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 36 H 0.15 2.63 8.06 -52.49 -0.42 2.21 16 37 H 0.17 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 324.79 15.07 4.89 4.89 Total: -1.00 -24.82 324.79 -8.41 -33.22 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -4.82 Total: 11.17 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.53 Total: -4.29 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.30 Total: -43.01 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Atomic # 35 Polarization: -0.76 SS G_CDS: -2.32 Total: -3.07 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -24.82 -8.41 -33.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037496675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.908 kcal (2) G-P(sol) polarization free energy of solvation -24.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds