Wall clock time and date at job start Tue Mar 31 2020 15:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47524 * 2 1 4 4 C 1.52998 * 109.46867 * 119.99811 * 2 1 3 5 5 N 1.46501 * 109.47203 * 174.99783 * 4 2 1 6 6 C 1.46502 * 120.00039 * 95.78097 * 5 4 2 7 7 C 1.50693 * 109.47079 * 92.43457 * 6 5 4 8 8 H 1.08003 * 120.00601 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00043 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99847 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00066 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47347 * 89.99582 * 11 9 7 13 13 H 1.48497 * 109.46857 * 209.99779 * 11 9 7 14 14 H 1.48500 * 109.46870 * 329.99486 * 11 9 7 15 15 C 1.34771 * 120.00142 * 275.78122 * 5 4 2 16 16 O 1.21697 * 120.00209 * 4.37265 * 15 5 4 17 17 C 1.46677 * 120.00231 * 184.37106 * 15 5 4 18 18 C 1.37885 * 126.22347 * 187.49131 * 17 15 5 19 19 C 1.39877 * 107.08894 * 179.85029 * 18 17 15 20 20 Br 1.89105 * 126.07639 * 180.16139 * 19 18 17 21 21 C 1.35507 * 107.85315 * 0.41063 * 19 18 17 22 22 N 1.35599 * 108.85667 * 359.74926 * 21 19 18 23 23 H 0.96996 * 125.67355 * 179.97438 * 22 21 19 24 24 H 1.09005 * 109.47126 * 300.00843 * 1 2 3 25 25 H 1.09007 * 109.46417 * 59.99848 * 1 2 3 26 26 H 1.08991 * 109.47314 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46958 * 239.99682 * 2 1 3 28 28 H 1.08999 * 109.47304 * 59.99125 * 3 2 1 29 29 H 1.08995 * 109.47320 * 180.02562 * 3 2 1 30 30 H 1.09009 * 109.46857 * 300.00086 * 3 2 1 31 31 H 1.09002 * 109.47405 * 54.99782 * 4 2 1 32 32 H 1.09001 * 109.47566 * 294.99688 * 4 2 1 33 33 H 1.08995 * 109.47252 * 212.43561 * 6 5 4 34 34 H 1.09007 * 109.46890 * 332.43666 * 6 5 4 35 35 H 0.96998 * 119.99503 * 179.97438 * 10 9 7 36 36 H 1.07994 * 126.45511 * 359.97438 * 18 17 15 37 37 H 1.07996 * 125.57262 * 179.76013 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.3340 0.1677 1.8708 7 6 4.6594 -0.3158 3.2604 8 1 4.2823 -1.2681 3.6031 9 6 5.4376 0.4581 4.0950 10 7 5.8963 1.6180 3.6781 11 14 5.8415 -0.1415 5.8175 12 1 7.0993 -0.9302 5.7848 13 1 6.0121 1.0250 6.7203 14 1 4.7343 -0.9960 6.3164 15 6 4.0760 -1.8377 0.5111 16 8 3.3867 -2.6174 -0.1197 17 6 5.5338 -1.9986 0.5316 18 6 6.2660 -2.8889 -0.2251 19 6 7.6117 -2.7014 0.1075 20 35 9.0804 -3.6445 -0.6200 21 6 7.6754 -1.7277 1.0478 22 7 6.4190 -1.2926 1.3141 23 1 6.1834 -0.5995 1.9504 24 1 -0.3633 0.5140 0.8899 25 1 -0.3632 0.5139 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6053 -1.7198 1.2953 32 1 1.7517 -0.1583 2.1370 33 1 5.2578 0.3115 1.3105 34 1 3.7951 1.1133 1.9319 35 1 6.4434 2.1626 4.2654 36 1 5.8745 -3.5961 -0.9412 37 1 8.5792 -1.3584 1.5095 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037496675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:06 Heat of formation + Delta-G solvation = -4.165242 kcal Electronic energy + Delta-G solvation = -20832.556342 eV Core-core repulsion = 17656.421800 eV Total energy + Delta-G solvation = -3176.134541 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.46453 -40.30548 -37.69573 -36.05123 -34.35299 -32.99628 -31.01671 -30.10568 -29.36629 -28.02759 -27.08323 -25.21079 -22.98197 -21.67945 -20.96321 -20.68612 -18.93225 -18.40102 -17.26034 -17.08990 -16.49471 -16.23006 -15.59725 -15.29453 -14.92283 -14.56738 -14.39444 -14.31139 -13.90489 -13.66691 -13.55205 -13.27831 -13.15851 -13.00310 -12.76314 -12.60135 -12.22909 -12.17676 -11.99879 -11.90472 -11.67804 -11.58826 -11.20094 -10.98097 -10.75423 -9.83664 -9.57360 -9.15598 -8.39105 -6.59482 0.52207 0.83329 1.34746 1.40936 1.47089 1.48407 2.10562 2.28618 2.35866 2.61222 2.90047 3.69370 3.97037 4.02311 4.16195 4.17235 4.28214 4.50897 4.61996 4.66820 4.72058 4.79001 4.87645 4.89832 4.97757 5.02332 5.05053 5.21920 5.37165 5.42068 5.51226 5.53808 5.66838 5.78613 5.87742 6.37029 6.57863 6.63211 7.11353 7.22176 8.62022 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010680 B = 0.005170 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.041796 B = 5414.856622 C = 7467.623386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C -0.140 4.140 4 C 0.124 3.876 5 N -0.592 5.592 6 C 0.231 3.769 7 C -0.567 4.567 8 H 0.055 0.945 9 C 0.039 3.961 10 N -0.899 5.899 11 Si 0.948 3.052 12 H -0.269 1.269 13 H -0.276 1.276 14 H -0.275 1.275 15 C 0.580 3.420 16 O -0.580 6.580 17 C -0.058 4.058 18 C -0.103 4.103 19 C -0.193 4.193 20 Br -0.020 7.020 21 C 0.049 3.951 22 N -0.512 5.512 23 H 0.449 0.551 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.029 0.971 34 H 0.044 0.956 35 H 0.278 0.722 36 H 0.152 0.848 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.191 -3.039 -5.354 6.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 C -0.197 4.197 4 C 0.002 3.998 5 N -0.321 5.321 6 C 0.109 3.891 7 C -0.606 4.606 8 H 0.073 0.927 9 C -0.166 4.166 10 N -0.535 5.535 11 Si 0.773 3.227 12 H -0.194 1.194 13 H -0.201 1.201 14 H -0.200 1.200 15 C 0.370 3.630 16 O -0.462 6.462 17 C -0.174 4.174 18 C -0.130 4.130 19 C -0.278 4.278 20 Br 0.064 6.936 21 C -0.094 4.094 22 N -0.120 5.120 23 H 0.307 0.693 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.170 0.830 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.328 -3.385 -5.705 7.031 hybrid contribution -0.044 0.360 1.449 1.493 sum 2.284 -3.025 -4.257 5.700 Atomic orbital electron populations 1.21699 0.92516 1.02178 1.02824 1.21426 0.97523 0.96329 0.97322 1.21812 1.00167 0.95528 1.02193 1.21580 0.78616 1.00822 0.98810 1.48061 1.07768 1.26390 1.49869 1.19602 0.90363 0.88153 0.90959 1.21667 1.33812 1.05724 0.99361 0.92693 1.25574 0.94993 0.94433 1.01583 1.69975 1.33773 1.11317 1.38480 0.85681 0.78928 0.78286 0.79832 1.19442 1.20056 1.19998 1.17262 0.85894 0.80780 0.79053 1.90701 1.63929 1.45917 1.45633 1.20423 0.90434 1.03027 1.03518 1.21134 0.90928 0.99745 1.01226 1.20981 0.92889 1.06134 1.07822 1.96491 1.38572 1.74316 1.84247 1.22452 0.89614 0.97831 0.99509 1.44369 1.05581 1.30537 1.31563 0.69342 0.91611 0.91230 0.92526 0.92873 0.92257 0.94655 0.91419 0.91637 0.89855 0.95364 0.93765 0.91284 0.82986 0.78566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.19 71.98 0.66 -2.51 16 2 C -0.11 -3.27 3.08 -10.79 -0.03 -3.30 16 3 C -0.14 -4.15 8.35 71.98 0.60 -3.55 16 4 C 0.12 4.44 4.74 86.38 0.41 4.85 16 5 N -0.59 -24.59 2.19 -830.88 -1.82 -26.41 16 6 C 0.23 10.18 3.69 85.63 0.32 10.50 16 7 C -0.57 -26.64 7.39 25.60 0.19 -26.45 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 9 C 0.04 1.79 5.08 84.65 0.43 2.22 16 10 N -0.90 -42.98 13.29 21.45 0.28 -42.69 16 11 Si 0.95 37.83 29.54 68.60 2.03 39.86 16 12 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 13 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 14 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 15 C 0.58 25.57 7.58 86.45 0.65 26.23 16 16 O -0.58 -27.09 16.50 -4.34 -0.07 -27.16 16 17 C -0.06 -2.44 6.63 40.35 0.27 -2.17 16 18 C -0.10 -3.85 10.64 22.58 0.24 -3.61 16 19 C -0.19 -6.47 6.53 22.03 0.14 -6.32 16 20 Br -0.02 -0.53 34.08 -20.37 -0.69 -1.23 16 21 C 0.05 1.68 11.86 83.48 0.99 2.67 16 22 N -0.51 -20.55 4.83 -183.54 -0.89 -21.44 16 23 H 0.45 19.27 3.31 -92.71 -0.31 18.96 16 24 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.85 8.03 -2.39 -0.02 1.83 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.03 1.21 6.39 -2.39 -0.02 1.19 16 30 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.07 2.39 7.67 -2.39 -0.02 2.37 16 32 H 0.08 2.88 8.03 -2.39 -0.02 2.86 16 33 H 0.03 1.32 5.16 -2.39 -0.01 1.31 16 34 H 0.04 2.02 6.75 -2.38 -0.02 2.00 16 35 H 0.28 12.58 8.31 -92.71 -0.77 11.81 16 36 H 0.15 5.42 8.06 -2.91 -0.02 5.40 16 37 H 0.20 5.43 8.06 -2.91 -0.02 5.41 16 Total: -1.00 -52.07 324.79 4.49 -47.58 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 0.78 Total: 32.94 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 4.87 Total: -1.44 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -2.42 Total: -90.54 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.07 Total: -27.16 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -0.69 Total: -1.23 kcal Total: -52.07 4.49 -47.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037496675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.415 kcal (2) G-P(sol) polarization free energy of solvation -52.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds