Wall clock time and date at job start Tue Mar 31 2020 15:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47167 * 2 1 4 4 N 1.46502 * 109.47115 * 119.99763 * 2 1 3 5 5 C 1.46506 * 119.99731 * 125.53748 * 4 2 1 6 6 C 1.50694 * 109.46866 * 269.99910 * 5 4 2 7 7 H 1.07997 * 120.00602 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99698 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99882 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00122 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46952 * 90.00207 * 10 8 6 12 12 H 1.48500 * 109.47257 * 210.00339 * 10 8 6 13 13 H 1.48501 * 109.46865 * 330.00156 * 10 8 6 14 14 C 1.34776 * 120.00321 * 305.54084 * 4 2 1 15 15 O 1.21689 * 120.00178 * 173.40438 * 14 4 2 16 16 C 1.46670 * 119.99675 * 353.39926 * 14 4 2 17 17 C 1.37887 * 126.22685 * 5.57487 * 16 14 4 18 18 C 1.39883 * 107.09064 * 180.02562 * 17 16 14 19 19 Br 1.89106 * 126.06893 * 180.02562 * 18 17 16 20 20 C 1.35502 * 107.85404 * 0.02562 * 18 17 16 21 21 N 1.35601 * 108.85483 * 359.72730 * 20 18 17 22 22 C 1.46503 * 125.67324 * 180.28829 * 21 20 18 23 23 H 1.08999 * 109.46920 * 277.09929 * 1 2 3 24 24 H 1.08999 * 109.46906 * 37.09813 * 1 2 3 25 25 H 1.08996 * 109.46767 * 157.10462 * 1 2 3 26 26 H 1.09000 * 109.47452 * 239.99865 * 2 1 3 27 27 H 1.08999 * 109.47236 * 210.14896 * 3 2 1 28 28 H 1.09004 * 109.46996 * 330.14725 * 3 2 1 29 29 H 1.08995 * 109.47199 * 90.14823 * 3 2 1 30 30 H 1.09007 * 109.46573 * 150.00157 * 5 4 2 31 31 H 1.09000 * 109.47175 * 30.00150 * 5 4 2 32 32 H 0.97005 * 119.99677 * 179.97438 * 9 8 6 33 33 H 1.07999 * 126.45459 * 0.02997 * 17 16 14 34 34 H 1.07995 * 125.56771 * 179.97438 * 20 18 17 35 35 H 1.09000 * 109.46995 * 264.81495 * 22 21 20 36 36 H 1.09003 * 109.46805 * 24.81109 * 22 21 20 37 37 H 1.09000 * 109.47151 * 144.81180 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.9578 -1.8071 1.0652 6 6 2.1899 -3.0977 0.9412 7 1 1.1101 -3.0874 0.9578 8 6 2.8659 -4.2918 0.8054 9 7 4.1808 -4.3043 0.7846 10 14 1.9140 -5.8917 0.6509 11 1 1.6412 -6.1689 -0.7823 12 1 2.7151 -7.0019 1.2262 13 1 0.6289 -5.7760 1.3861 14 6 1.6034 -0.2988 2.4172 15 8 1.9122 -0.9448 3.4011 16 6 0.7796 0.9062 2.5599 17 6 0.2672 1.6695 1.5323 18 6 -0.4521 2.7170 2.1173 19 35 -1.3777 4.0836 1.1945 20 6 -0.3677 2.5784 3.4625 21 7 0.3735 1.4783 3.7441 22 6 0.6917 0.9830 5.0856 23 1 -0.3633 0.1270 1.0198 24 1 -0.3633 0.8197 -0.6199 25 1 -0.3633 -0.9467 -0.3998 26 1 1.8934 -0.5138 -0.8899 27 1 2.9990 1.4888 -0.5161 28 1 1.3208 2.0822 -0.5116 29 1 2.1637 1.7842 1.0276 30 1 3.5981 -1.8485 1.9464 31 1 3.5720 -1.6628 0.1763 32 1 4.6564 -5.1444 0.6894 33 1 0.3967 1.4920 0.4749 34 1 -0.8204 3.2344 4.1912 35 1 1.6661 1.3637 5.3919 36 1 -0.0687 1.3235 5.7885 37 1 0.7144 -0.1067 5.0747 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037844006.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:02 Heat of formation + Delta-G solvation = 104.546565 kcal Electronic energy + Delta-G solvation = -21158.580387 eV Core-core repulsion = 17987.159944 eV Total energy + Delta-G solvation = -3171.420444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.98511 -38.85292 -36.85685 -33.57675 -32.80664 -31.58711 -30.48786 -28.85030 -27.16551 -26.94200 -25.98597 -23.45084 -22.30672 -21.19276 -19.79162 -17.94941 -17.05007 -16.49092 -15.64857 -15.46133 -15.32098 -14.67429 -14.29469 -13.96597 -13.63176 -13.32833 -13.18850 -13.14450 -12.34477 -12.30564 -12.17220 -11.85875 -11.79726 -11.21362 -11.17124 -11.03878 -10.85459 -10.74927 -10.55629 -10.26705 -10.12621 -9.73115 -9.63778 -9.10357 -8.44376 -8.33539 -7.94717 -7.66883 -6.05210 -4.09454 1.71620 1.82002 2.54570 2.93531 3.30082 3.36655 3.41412 3.85050 3.94307 4.44539 4.84501 4.87494 4.93653 5.12900 5.22279 5.29536 5.32091 5.36782 5.58120 5.65277 5.77792 5.82958 5.88357 6.00587 6.10370 6.28959 6.50022 6.58409 6.65867 6.90131 7.04533 7.18688 7.37918 7.51872 7.91123 8.20970 8.33586 8.86099 9.01759 9.55415 11.02832 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.003928 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.095307 B = 7127.344244 C = 7686.359213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.128 3.872 3 C -0.181 4.181 4 N -0.576 5.576 5 C 0.249 3.751 6 C -0.523 4.523 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.578 3.422 15 O -0.545 6.545 16 C -0.047 4.047 17 C -0.153 4.153 18 C -0.192 4.192 19 Br -0.043 7.043 20 C 0.039 3.961 21 N -0.402 5.402 22 C 0.067 3.933 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.263 0.737 33 H 0.218 0.782 34 H 0.171 0.829 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.154 18.375 1.407 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.024 3.976 3 C -0.238 4.238 4 N -0.306 5.306 5 C 0.130 3.870 6 C -0.562 4.562 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.535 5.535 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.365 3.635 15 O -0.425 6.425 16 C -0.161 4.161 17 C -0.177 4.177 18 C -0.278 4.278 19 Br 0.041 6.959 20 C -0.100 4.100 21 N -0.074 5.074 22 C -0.074 4.074 23 H 0.107 0.893 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.117 0.883 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.233 0.767 34 H 0.188 0.812 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.018 18.194 1.921 20.859 hybrid contribution -0.334 -1.157 0.215 1.223 sum -10.352 17.038 2.136 20.050 Atomic orbital electron populations 1.23237 0.95841 1.01762 1.04200 1.21223 0.93718 0.92640 0.90061 1.22979 1.01102 0.96255 1.03508 1.48063 1.45413 1.33854 1.03313 1.19369 0.87353 0.81975 0.98265 1.21421 0.93447 0.91233 1.50107 0.92322 1.24922 0.94874 0.99082 0.95169 1.69932 1.06339 1.26979 1.50230 0.86505 0.79929 0.82918 0.78131 1.20608 1.21129 1.19924 1.16755 0.79891 0.82559 0.84312 1.90752 1.58086 1.56054 1.37573 1.20623 1.09828 1.01106 0.84568 1.24229 0.97678 0.92603 1.03190 1.20950 1.12053 1.01055 0.93712 1.96531 1.75290 1.47900 1.76217 1.21730 1.00460 0.92054 0.95781 1.43935 1.37022 1.19756 1.06729 1.22312 1.01796 1.03672 0.79595 0.89257 0.91245 0.92195 0.88270 0.92594 0.91208 0.90537 0.93865 0.94601 0.92728 0.76710 0.81185 0.90434 0.90044 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.90 7.90 37.16 0.29 -2.61 16 2 C 0.13 2.13 3.26 -67.93 -0.22 1.91 16 3 C -0.18 -2.50 8.03 37.16 0.30 -2.20 16 4 N -0.58 -12.24 2.41 -169.00 -0.41 -12.65 16 5 C 0.25 6.41 5.06 -5.19 -0.03 6.38 16 6 C -0.52 -14.66 9.39 -34.44 -0.32 -14.98 16 7 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 10 Si 0.90 21.78 29.54 -169.99 -5.02 16.75 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.58 12.33 6.89 -12.86 -0.09 12.24 16 15 O -0.54 -13.41 14.42 5.20 0.07 -13.33 16 16 C -0.05 -0.81 5.28 -81.98 -0.43 -1.25 16 17 C -0.15 -2.25 4.69 -39.09 -0.18 -2.43 16 18 C -0.19 -2.53 6.53 -39.94 -0.26 -2.79 16 19 Br -0.04 -0.48 34.08 -68.01 -2.32 -2.80 16 20 C 0.04 0.49 11.33 -16.86 -0.19 0.30 16 21 N -0.40 -5.87 3.16 -120.20 -0.38 -6.25 16 22 C 0.07 0.83 10.49 59.85 0.63 1.46 16 23 H 0.09 1.47 3.95 -61.57 -0.24 1.23 16 24 H 0.07 0.83 6.91 -51.93 -0.36 0.47 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.10 1.65 7.84 -51.93 -0.41 1.25 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.79 6.57 -51.93 -0.34 0.45 16 29 H 0.08 1.17 4.99 -51.93 -0.26 0.91 16 30 H 0.04 1.25 7.52 -51.92 -0.39 0.86 16 31 H 0.04 0.93 7.97 -51.93 -0.41 0.51 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.22 2.96 0.74 -115.83 -0.09 2.87 16 34 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 37 H 0.11 1.62 6.52 -51.93 -0.34 1.28 16 LS Contribution 312.28 15.07 4.71 4.71 Total: -1.00 -31.95 312.28 -7.71 -39.66 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.50 Total: 1.80 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.61 Total: -2.33 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.05 Total: -44.45 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.07 Total: -13.33 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.32 Total: -2.80 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.95 -7.71 -39.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037844006.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.206 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds