Wall clock time and date at job start Tue Mar 31 2020 15:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47167 * 2 1 4 4 N 1.46502 * 109.47115 * 119.99763 * 2 1 3 5 5 C 1.46506 * 119.99731 * 125.53748 * 4 2 1 6 6 C 1.50694 * 109.46866 * 269.99910 * 5 4 2 7 7 H 1.07997 * 120.00602 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99698 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99882 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00122 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46952 * 90.00207 * 10 8 6 12 12 H 1.48500 * 109.47257 * 210.00339 * 10 8 6 13 13 H 1.48501 * 109.46865 * 330.00156 * 10 8 6 14 14 C 1.34776 * 120.00321 * 305.54084 * 4 2 1 15 15 O 1.21689 * 120.00178 * 173.40438 * 14 4 2 16 16 C 1.46670 * 119.99675 * 353.39926 * 14 4 2 17 17 C 1.37887 * 126.22685 * 5.57487 * 16 14 4 18 18 C 1.39883 * 107.09064 * 180.02562 * 17 16 14 19 19 Br 1.89106 * 126.06893 * 180.02562 * 18 17 16 20 20 C 1.35502 * 107.85404 * 0.02562 * 18 17 16 21 21 N 1.35601 * 108.85483 * 359.72730 * 20 18 17 22 22 C 1.46503 * 125.67324 * 180.28829 * 21 20 18 23 23 H 1.08999 * 109.46920 * 277.09929 * 1 2 3 24 24 H 1.08999 * 109.46906 * 37.09813 * 1 2 3 25 25 H 1.08996 * 109.46767 * 157.10462 * 1 2 3 26 26 H 1.09000 * 109.47452 * 239.99865 * 2 1 3 27 27 H 1.08999 * 109.47236 * 210.14896 * 3 2 1 28 28 H 1.09004 * 109.46996 * 330.14725 * 3 2 1 29 29 H 1.08995 * 109.47199 * 90.14823 * 3 2 1 30 30 H 1.09007 * 109.46573 * 150.00157 * 5 4 2 31 31 H 1.09000 * 109.47175 * 30.00150 * 5 4 2 32 32 H 0.97005 * 119.99677 * 179.97438 * 9 8 6 33 33 H 1.07999 * 126.45459 * 0.02997 * 17 16 14 34 34 H 1.07995 * 125.56771 * 179.97438 * 20 18 17 35 35 H 1.09000 * 109.46995 * 264.81495 * 22 21 20 36 36 H 1.09003 * 109.46805 * 24.81109 * 22 21 20 37 37 H 1.09000 * 109.47151 * 144.81180 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.9578 -1.8071 1.0652 6 6 2.1899 -3.0977 0.9412 7 1 1.1101 -3.0874 0.9578 8 6 2.8659 -4.2918 0.8054 9 7 4.1808 -4.3043 0.7846 10 14 1.9140 -5.8917 0.6509 11 1 1.6412 -6.1689 -0.7823 12 1 2.7151 -7.0019 1.2262 13 1 0.6289 -5.7760 1.3861 14 6 1.6034 -0.2988 2.4172 15 8 1.9122 -0.9448 3.4011 16 6 0.7796 0.9062 2.5599 17 6 0.2672 1.6695 1.5323 18 6 -0.4521 2.7170 2.1173 19 35 -1.3777 4.0836 1.1945 20 6 -0.3677 2.5784 3.4625 21 7 0.3735 1.4783 3.7441 22 6 0.6917 0.9830 5.0856 23 1 -0.3633 0.1270 1.0198 24 1 -0.3633 0.8197 -0.6199 25 1 -0.3633 -0.9467 -0.3998 26 1 1.8934 -0.5138 -0.8899 27 1 2.9990 1.4888 -0.5161 28 1 1.3208 2.0822 -0.5116 29 1 2.1637 1.7842 1.0276 30 1 3.5981 -1.8485 1.9464 31 1 3.5720 -1.6628 0.1763 32 1 4.6564 -5.1444 0.6894 33 1 0.3967 1.4920 0.4749 34 1 -0.8204 3.2344 4.1912 35 1 1.6661 1.3637 5.3919 36 1 -0.0687 1.3235 5.7885 37 1 0.7144 -0.1067 5.0747 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037844006.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:02 Heat of formation + Delta-G solvation = 85.060211 kcal Electronic energy + Delta-G solvation = -21159.425379 eV Core-core repulsion = 17987.159944 eV Total energy + Delta-G solvation = -3172.265435 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.18797 -40.29199 -38.36329 -35.48983 -34.12945 -33.22183 -31.54113 -30.14604 -28.93595 -28.21312 -27.05998 -25.30011 -23.73015 -22.66415 -20.91227 -19.25409 -18.66326 -18.36010 -17.23592 -16.81105 -16.69188 -16.17313 -15.85089 -15.56520 -15.01965 -14.52038 -14.32656 -14.20240 -14.18193 -13.69386 -13.56781 -13.27575 -13.07717 -12.94507 -12.76399 -12.47374 -12.44944 -12.25017 -12.07793 -11.71421 -11.68948 -11.30118 -10.84353 -10.72749 -10.63894 -9.57400 -9.33655 -9.02290 -8.22366 -6.36553 0.48111 0.83257 1.35899 1.38384 1.47720 1.49114 1.77818 2.30367 2.42967 2.48630 3.06918 3.57958 3.86950 3.90483 3.96940 4.10329 4.14250 4.34507 4.44204 4.58590 4.63859 4.68706 4.74667 4.86036 4.87055 4.99354 5.12940 5.17796 5.27539 5.40160 5.53673 5.60132 5.76468 5.87193 6.05235 6.14831 6.67046 6.73305 7.24998 7.40547 8.84441 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.003928 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.095307 B = 7127.344244 C = 7686.359213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.120 3.880 3 C -0.172 4.172 4 N -0.584 5.584 5 C 0.265 3.735 6 C -0.538 4.538 7 H 0.050 0.950 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.965 3.035 11 H -0.262 1.262 12 H -0.280 1.280 13 H -0.276 1.276 14 C 0.569 3.431 15 O -0.596 6.596 16 C -0.091 4.091 17 C -0.128 4.128 18 C -0.209 4.209 19 Br -0.017 7.017 20 C 0.067 3.933 21 N -0.409 5.409 22 C 0.066 3.934 23 H 0.076 0.924 24 H 0.110 0.890 25 H 0.047 0.953 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.062 0.938 30 H -0.001 1.001 31 H 0.029 0.971 32 H 0.267 0.733 33 H 0.224 0.776 34 H 0.212 0.788 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.499 20.455 0.753 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.016 3.984 3 C -0.229 4.229 4 N -0.314 5.314 5 C 0.144 3.856 6 C -0.577 4.577 7 H 0.068 0.932 8 C -0.188 4.188 9 N -0.567 5.567 10 Si 0.790 3.210 11 H -0.187 1.187 12 H -0.205 1.205 13 H -0.201 1.201 14 C 0.360 3.640 15 O -0.480 6.480 16 C -0.203 4.203 17 C -0.153 4.153 18 C -0.294 4.294 19 Br 0.066 6.934 20 C -0.073 4.073 21 N -0.081 5.081 22 C -0.074 4.074 23 H 0.094 0.906 24 H 0.128 0.872 25 H 0.066 0.934 26 H 0.112 0.888 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.081 0.919 30 H 0.017 0.983 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.239 0.761 34 H 0.228 0.772 35 H 0.098 0.902 36 H 0.144 0.856 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.374 20.302 1.229 23.808 hybrid contribution 0.361 -1.679 0.429 1.770 sum -12.013 18.623 1.658 22.224 Atomic orbital electron populations 1.23190 0.94287 1.02829 1.04025 1.21543 0.95034 0.93894 0.87890 1.22878 1.02361 0.94479 1.03150 1.48020 1.44942 1.33174 1.05256 1.18818 0.87672 0.83396 0.95665 1.21636 0.93113 0.92602 1.50335 0.93212 1.25798 0.95830 1.02619 0.94578 1.70044 1.07817 1.28079 1.50753 0.85451 0.78212 0.78451 0.78904 1.18732 1.20512 1.20130 1.17366 0.79682 0.83536 0.83412 1.90706 1.60262 1.58017 1.39009 1.20024 1.12393 1.01117 0.86811 1.24269 0.96085 0.91927 1.03020 1.21126 1.12503 1.01527 0.94270 1.96566 1.74610 1.46434 1.75767 1.22446 0.97711 0.90623 0.96554 1.44126 1.37160 1.20269 1.06580 1.22376 1.03664 1.01656 0.79714 0.90551 0.87170 0.93353 0.88755 0.92022 0.87695 0.91904 0.98274 0.95285 0.92375 0.76069 0.77161 0.90184 0.85617 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.36 7.90 71.98 0.57 -4.79 16 2 C 0.12 3.97 3.26 44.99 0.15 4.12 16 3 C -0.17 -4.48 8.03 71.98 0.58 -3.90 16 4 N -0.58 -26.06 2.41 -806.81 -1.94 -28.00 16 5 C 0.27 14.55 5.06 85.63 0.43 14.98 16 6 C -0.54 -31.48 9.39 25.60 0.24 -31.24 16 7 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 8 C 0.01 0.63 5.46 84.66 0.46 1.09 16 9 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 10 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 11 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 14 C 0.57 25.61 6.89 86.44 0.60 26.20 16 15 O -0.60 -31.61 14.42 -4.31 -0.06 -31.67 16 16 C -0.09 -3.12 5.28 40.35 0.21 -2.91 16 17 C -0.13 -3.51 4.69 22.58 0.11 -3.40 16 18 C -0.21 -4.82 6.53 22.04 0.14 -4.67 16 19 Br -0.02 -0.32 34.08 -20.37 -0.69 -1.02 16 20 C 0.07 1.43 11.33 83.48 0.95 2.38 16 21 N -0.41 -11.40 3.16 -534.20 -1.69 -13.09 16 22 C 0.07 1.61 10.49 127.77 1.34 2.95 16 23 H 0.08 2.45 3.95 -11.45 -0.05 2.41 16 24 H 0.11 2.23 6.91 -2.39 -0.02 2.21 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.09 3.18 7.84 -2.39 -0.02 3.16 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.10 2.00 6.57 -2.38 -0.02 1.98 16 29 H 0.06 1.87 4.99 -2.39 -0.01 1.85 16 30 H 0.00 -0.05 7.52 -2.38 -0.02 -0.07 16 31 H 0.03 1.60 7.97 -2.39 -0.02 1.58 16 32 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 33 H 0.22 5.52 0.74 -62.41 -0.05 5.47 16 34 H 0.21 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.13 1.83 8.12 -2.39 -0.02 1.81 16 37 H 0.07 2.30 6.52 -2.39 -0.02 2.29 16 Total: -1.00 -73.91 312.28 4.72 -69.19 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 1.02 Total: 12.22 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 5.78 Total: 0.80 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -3.35 Total: -96.94 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.06 Total: -31.67 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -0.69 Total: -1.02 kcal Total: -73.91 4.72 -69.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037844006.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.247 kcal (2) G-P(sol) polarization free energy of solvation -73.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds