Wall clock time and date at job start Tue Mar 31 2020 15:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46702 * 2 1 4 4 C 1.46499 * 120.00200 * 91.56053 * 3 2 1 5 5 C 1.50703 * 109.47196 * 89.99986 * 4 3 2 6 6 H 1.08001 * 119.99651 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00156 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99993 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00297 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46717 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47039 * 120.00031 * 9 7 5 12 12 H 1.48499 * 109.47355 * 240.00333 * 9 7 5 13 13 C 1.34777 * 119.99665 * 271.55740 * 3 2 1 14 14 O 1.21697 * 119.99786 * 184.95724 * 13 3 2 15 15 C 1.46676 * 120.00255 * 4.96173 * 13 3 2 16 16 C 1.37885 * 126.22409 * 7.68327 * 15 13 3 17 17 C 1.39876 * 107.09240 * 180.02562 * 16 15 13 18 18 Br 1.89097 * 126.07256 * 180.02562 * 17 16 15 19 19 C 1.35506 * 107.84958 * 0.02562 * 17 16 15 20 20 N 1.35592 * 108.86196 * 359.72593 * 19 17 16 21 21 C 1.46500 * 125.68077 * 180.28983 * 20 19 17 22 22 C 1.52992 * 109.47297 * 260.40875 * 21 20 19 23 23 H 1.09006 * 109.46495 * 172.87600 * 1 2 3 24 24 H 1.09003 * 109.47448 * 292.87032 * 1 2 3 25 25 H 1.08993 * 109.47336 * 52.87774 * 1 2 3 26 26 H 1.08999 * 109.47216 * 239.99544 * 2 1 3 27 27 H 1.09004 * 109.47005 * 119.99625 * 2 1 3 28 28 H 1.09009 * 109.47057 * 209.99953 * 4 3 2 29 29 H 1.08992 * 109.47275 * 329.99616 * 4 3 2 30 30 H 0.96998 * 120.00700 * 179.97438 * 8 7 5 31 31 H 1.08007 * 126.45135 * 0.02601 * 16 15 13 32 32 H 1.08002 * 125.56496 * 179.97438 * 19 17 16 33 33 H 1.09008 * 109.46764 * 20.41028 * 21 20 19 34 34 H 1.09002 * 109.47110 * 140.40682 * 21 20 19 35 35 H 1.08999 * 109.47254 * 65.02082 * 22 21 20 36 36 H 1.08997 * 109.47615 * 185.01883 * 22 21 20 37 37 H 1.09003 * 109.47480 * 305.02456 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2950 2.0604 1.2682 5 6 3.7290 1.8199 1.6644 6 1 4.3699 1.2207 1.0347 7 6 4.2226 2.3648 2.8308 8 7 3.4422 3.0949 3.5973 9 14 5.9998 2.0662 3.3222 10 1 6.6609 1.2184 2.2978 11 1 6.7105 3.3662 3.4233 12 1 6.0408 1.3761 4.6365 13 6 2.2129 2.0271 -1.1668 14 8 2.7031 3.1409 -1.1713 15 6 1.8338 1.3876 -2.4312 16 6 1.1392 0.2046 -2.5699 17 6 0.9977 -0.0307 -3.9414 18 35 0.1264 -1.5105 -4.7331 19 6 1.5959 0.9901 -4.6019 20 7 2.1029 1.8615 -3.6952 21 6 2.8203 3.0998 -4.0086 22 6 4.3266 2.8617 -3.8852 23 1 -0.3632 -1.0198 -0.1275 24 1 -0.3634 0.3994 0.9469 25 1 -0.3633 0.6202 -0.8193 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 2.1247 3.1308 1.1519 29 1 1.6339 1.6694 2.0415 30 1 3.7893 3.4780 4.4181 31 1 0.7732 -0.4222 -1.7700 32 1 1.6553 1.0947 -5.6752 33 1 2.5835 3.4091 -5.0266 34 1 2.5177 3.8814 -3.3117 35 1 4.6444 2.1451 -4.6426 36 1 4.8564 3.8030 -4.0307 37 1 4.5522 2.4672 -2.8944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037846330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:49 Heat of formation + Delta-G solvation = 35.189131 kcal Electronic energy + Delta-G solvation = -20732.809135 eV Core-core repulsion = 17558.381127 eV Total energy + Delta-G solvation = -3174.428008 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.49070 -38.54580 -35.84756 -34.01017 -32.89899 -31.20596 -30.63718 -29.20918 -28.36681 -26.90219 -23.63272 -23.25431 -22.99889 -20.97435 -20.26934 -18.57176 -16.87701 -16.45271 -15.85459 -15.32113 -15.20191 -14.52823 -14.28831 -13.99637 -13.97626 -13.44334 -13.12944 -12.62316 -12.44828 -12.27228 -12.05035 -11.93617 -11.68912 -11.55473 -11.22321 -11.12907 -10.90386 -10.78088 -10.71960 -10.49321 -10.17141 -10.12510 -9.64548 -9.10999 -8.50930 -8.45472 -8.13850 -7.68863 -6.06201 -4.10640 1.71800 1.79225 2.51232 2.88230 3.28690 3.36221 3.40591 3.87783 3.96985 4.43686 4.71819 4.85057 4.99385 5.09161 5.25556 5.28656 5.34218 5.39088 5.62140 5.64221 5.73540 5.80859 5.86194 5.95066 6.13842 6.23530 6.27260 6.54793 6.58704 6.90261 7.04634 7.19020 7.38868 7.50377 7.90093 8.20268 8.34049 8.85480 9.01339 9.54350 11.01900 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.003908 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.522224 B = 7162.414860 C = 8004.797745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 N -0.578 5.578 4 C 0.249 3.751 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.573 3.427 14 O -0.544 6.544 15 C -0.017 4.017 16 C -0.152 4.152 17 C -0.179 4.179 18 Br -0.042 7.042 19 C 0.040 3.960 20 N -0.401 5.401 21 C 0.098 3.902 22 C -0.163 4.163 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.036 0.964 30 H 0.263 0.737 31 H 0.182 0.818 32 H 0.171 0.829 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.809 -7.861 -18.064 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.040 4.040 3 N -0.308 5.308 4 C 0.130 3.870 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.360 3.640 14 O -0.423 6.423 15 C -0.132 4.132 16 C -0.177 4.177 17 C -0.265 4.265 18 Br 0.042 6.958 19 C -0.099 4.099 20 N -0.073 5.073 21 C -0.022 4.022 22 C -0.221 4.221 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.199 0.801 32 H 0.189 0.811 33 H 0.105 0.895 34 H 0.128 0.872 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.660 -7.347 -18.182 20.711 hybrid contribution 1.145 0.131 0.448 1.236 sum -5.515 -7.216 -17.734 19.925 Atomic orbital electron populations 1.22411 0.96582 1.01853 1.03017 1.22090 0.93684 0.84334 1.03872 1.47961 1.62704 1.13117 1.07011 1.19340 0.96325 0.93691 0.77627 1.21451 0.96304 1.32209 1.06305 0.92359 1.24918 0.97942 0.94917 0.96258 1.69937 1.35765 1.33916 1.13778 0.86451 0.84742 0.78027 0.78259 1.19814 1.20910 1.20938 1.16861 0.79541 0.85378 0.82239 1.90766 1.44931 1.19811 1.86828 1.20592 1.08702 0.97787 0.86139 1.22515 1.02648 0.97043 0.95528 1.20941 1.12297 0.97894 0.95365 1.96540 1.77943 1.39447 1.81885 1.21724 1.01754 0.91107 0.95300 1.44170 1.40272 1.18119 1.04785 1.22091 0.92966 0.84603 1.02588 1.22067 0.93785 1.02673 1.03566 0.91670 0.91790 0.91876 0.89592 0.89738 0.93843 0.94618 0.92764 0.80143 0.81146 0.89460 0.87226 0.92671 0.90614 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 8.55 37.16 0.32 -2.18 16 2 C 0.08 1.39 5.58 -4.04 -0.02 1.37 16 3 N -0.58 -12.27 2.46 -176.60 -0.43 -12.71 16 4 C 0.25 6.40 5.12 -5.19 -0.03 6.38 16 5 C -0.52 -14.67 9.39 -34.44 -0.32 -15.00 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 9 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.57 12.12 7.62 -12.85 -0.10 12.02 16 14 O -0.54 -13.12 14.00 5.19 0.07 -13.04 16 15 C -0.02 -0.30 6.72 -81.98 -0.55 -0.85 16 16 C -0.15 -2.26 7.43 -39.10 -0.29 -2.55 16 17 C -0.18 -2.39 6.53 -39.94 -0.26 -2.65 16 18 Br -0.04 -0.47 34.08 -68.01 -2.32 -2.79 16 19 C 0.04 0.50 11.32 -16.87 -0.19 0.30 16 20 N -0.40 -5.82 2.77 -112.84 -0.31 -6.14 16 21 C 0.10 1.25 6.11 -4.05 -0.02 1.22 16 22 C -0.16 -2.10 10.14 37.15 0.38 -1.72 16 23 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.90 6.57 -51.93 -0.34 0.56 16 26 H 0.09 1.31 4.82 -51.93 -0.25 1.06 16 27 H 0.08 1.42 8.06 -51.93 -0.42 1.00 16 28 H 0.04 1.25 7.49 -51.92 -0.39 0.86 16 29 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.18 2.49 3.15 -52.48 -0.17 2.32 16 32 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.09 0.79 8.11 -51.92 -0.42 0.37 16 34 H 0.11 1.64 6.75 -51.93 -0.35 1.29 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.23 7.72 -51.93 -0.40 0.82 16 LS Contribution 324.89 15.07 4.90 4.90 Total: -1.00 -31.62 324.89 -8.38 -40.01 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.81 Total: 0.63 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.19 Total: -2.01 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -0.01 Total: -44.38 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.07 Total: -13.04 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.32 Total: -2.79 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.62 -8.38 -40.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037846330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.195 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds