Wall clock time and date at job start Tue Mar 31 2020 15:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46702 * 2 1 4 4 C 1.46499 * 120.00200 * 91.56053 * 3 2 1 5 5 C 1.50703 * 109.47196 * 89.99986 * 4 3 2 6 6 H 1.08001 * 119.99651 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00156 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99993 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00297 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46717 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47039 * 120.00031 * 9 7 5 12 12 H 1.48499 * 109.47355 * 240.00333 * 9 7 5 13 13 C 1.34777 * 119.99665 * 271.55740 * 3 2 1 14 14 O 1.21697 * 119.99786 * 184.95724 * 13 3 2 15 15 C 1.46676 * 120.00255 * 4.96173 * 13 3 2 16 16 C 1.37885 * 126.22409 * 7.68327 * 15 13 3 17 17 C 1.39876 * 107.09240 * 180.02562 * 16 15 13 18 18 Br 1.89097 * 126.07256 * 180.02562 * 17 16 15 19 19 C 1.35506 * 107.84958 * 0.02562 * 17 16 15 20 20 N 1.35592 * 108.86196 * 359.72593 * 19 17 16 21 21 C 1.46500 * 125.68077 * 180.28983 * 20 19 17 22 22 C 1.52992 * 109.47297 * 260.40875 * 21 20 19 23 23 H 1.09006 * 109.46495 * 172.87600 * 1 2 3 24 24 H 1.09003 * 109.47448 * 292.87032 * 1 2 3 25 25 H 1.08993 * 109.47336 * 52.87774 * 1 2 3 26 26 H 1.08999 * 109.47216 * 239.99544 * 2 1 3 27 27 H 1.09004 * 109.47005 * 119.99625 * 2 1 3 28 28 H 1.09009 * 109.47057 * 209.99953 * 4 3 2 29 29 H 1.08992 * 109.47275 * 329.99616 * 4 3 2 30 30 H 0.96998 * 120.00700 * 179.97438 * 8 7 5 31 31 H 1.08007 * 126.45135 * 0.02601 * 16 15 13 32 32 H 1.08002 * 125.56496 * 179.97438 * 19 17 16 33 33 H 1.09008 * 109.46764 * 20.41028 * 21 20 19 34 34 H 1.09002 * 109.47110 * 140.40682 * 21 20 19 35 35 H 1.08999 * 109.47254 * 65.02082 * 22 21 20 36 36 H 1.08997 * 109.47615 * 185.01883 * 22 21 20 37 37 H 1.09003 * 109.47480 * 305.02456 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2950 2.0604 1.2682 5 6 3.7290 1.8199 1.6644 6 1 4.3699 1.2207 1.0347 7 6 4.2226 2.3648 2.8308 8 7 3.4422 3.0949 3.5973 9 14 5.9998 2.0662 3.3222 10 1 6.6609 1.2184 2.2978 11 1 6.7105 3.3662 3.4233 12 1 6.0408 1.3761 4.6365 13 6 2.2129 2.0271 -1.1668 14 8 2.7031 3.1409 -1.1713 15 6 1.8338 1.3876 -2.4312 16 6 1.1392 0.2046 -2.5699 17 6 0.9977 -0.0307 -3.9414 18 35 0.1264 -1.5105 -4.7331 19 6 1.5959 0.9901 -4.6019 20 7 2.1029 1.8615 -3.6952 21 6 2.8203 3.0998 -4.0086 22 6 4.3266 2.8617 -3.8852 23 1 -0.3632 -1.0198 -0.1275 24 1 -0.3634 0.3994 0.9469 25 1 -0.3633 0.6202 -0.8193 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 2.1247 3.1308 1.1519 29 1 1.6339 1.6694 2.0415 30 1 3.7893 3.4780 4.4181 31 1 0.7732 -0.4222 -1.7700 32 1 1.6553 1.0947 -5.6752 33 1 2.5835 3.4091 -5.0266 34 1 2.5177 3.8814 -3.3117 35 1 4.6444 2.1451 -4.6426 36 1 4.8564 3.8030 -4.0307 37 1 4.5522 2.4672 -2.8944 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037846330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:49 Heat of formation + Delta-G solvation = 16.836894 kcal Electronic energy + Delta-G solvation = -20733.604948 eV Core-core repulsion = 17558.381127 eV Total energy + Delta-G solvation = -3175.223820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.66732 -40.12197 -37.38524 -35.32784 -34.80878 -32.31292 -32.13515 -30.48449 -29.53495 -28.68782 -25.32501 -24.60900 -24.30260 -22.34865 -21.49200 -19.89839 -18.65261 -18.14239 -17.31652 -16.97708 -16.49391 -16.12077 -15.77957 -15.41786 -15.09003 -14.76485 -14.41980 -14.26454 -13.74051 -13.61815 -13.42719 -13.31361 -13.09766 -12.99204 -12.77949 -12.68612 -12.47467 -12.22075 -12.16182 -11.84478 -11.74415 -11.69945 -11.16411 -10.70985 -10.65466 -9.62632 -9.56200 -9.16228 -8.23254 -6.37698 0.46592 0.79272 1.35541 1.37136 1.43690 1.49322 1.72041 2.31032 2.42032 2.50892 3.06229 3.58959 3.78237 3.96653 4.05935 4.07743 4.21479 4.34757 4.35892 4.53336 4.58533 4.66184 4.77677 4.88529 4.92534 5.01415 5.03993 5.15657 5.18055 5.37782 5.49007 5.56405 5.75419 5.83797 6.04401 6.14157 6.66533 6.72535 7.24433 7.39984 8.83895 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.003908 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.522224 B = 7162.414860 C = 8004.797745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.080 3.920 3 N -0.587 5.587 4 C 0.267 3.733 5 C -0.540 4.540 6 H 0.049 0.951 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.268 1.268 13 C 0.566 3.434 14 O -0.590 6.590 15 C -0.059 4.059 16 C -0.135 4.135 17 C -0.196 4.196 18 Br -0.018 7.018 19 C 0.068 3.932 20 N -0.404 5.404 21 C 0.096 3.904 22 C -0.156 4.156 23 H 0.103 0.897 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.000 1.000 29 H 0.028 0.972 30 H 0.268 0.732 31 H 0.189 0.811 32 H 0.214 0.786 33 H 0.136 0.864 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.849 -9.731 -20.527 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.042 4.042 3 N -0.317 5.317 4 C 0.146 3.854 5 C -0.578 4.578 6 H 0.067 0.933 7 C -0.188 4.188 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.193 1.193 13 C 0.355 3.645 14 O -0.473 6.473 15 C -0.172 4.172 16 C -0.161 4.161 17 C -0.281 4.281 18 Br 0.066 6.934 19 C -0.072 4.072 20 N -0.077 5.077 21 C -0.024 4.024 22 C -0.214 4.214 23 H 0.122 0.878 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.122 0.878 27 H 0.097 0.903 28 H 0.018 0.982 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.206 0.794 32 H 0.230 0.770 33 H 0.154 0.846 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.723 -9.255 -20.648 23.605 hybrid contribution 1.091 0.672 1.106 1.693 sum -5.632 -8.582 -19.542 22.074 Atomic orbital electron populations 1.22328 0.94176 1.04073 1.02237 1.22366 0.95613 0.81774 1.04403 1.47924 1.63245 1.14765 1.05768 1.18773 0.95355 0.91621 0.79672 1.21667 0.97264 1.32363 1.06533 0.93269 1.25798 1.02433 0.94435 0.96138 1.70046 1.37789 1.34573 1.14243 0.85391 0.79159 0.78015 0.78379 1.19446 1.20616 1.19304 1.17438 0.78535 0.84957 0.83524 1.90721 1.47031 1.21830 1.87681 1.20006 1.12222 0.99427 0.85578 1.22622 1.00866 0.95757 0.96892 1.21112 1.13027 0.99232 0.94749 1.96572 1.77480 1.38141 1.81200 1.22445 0.98656 0.89377 0.96694 1.44343 1.40355 1.18818 1.04172 1.22203 0.92524 0.83381 1.04302 1.22005 0.94348 1.03736 1.01312 0.87805 0.92976 0.92233 0.87814 0.90348 0.98189 0.95410 0.92351 0.79414 0.76962 0.84636 0.90348 0.90412 0.89236 0.95641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.57 8.55 71.98 0.62 -3.95 16 2 C 0.08 2.68 5.58 86.38 0.48 3.16 16 3 N -0.59 -26.25 2.46 -830.86 -2.04 -28.29 16 4 C 0.27 14.62 5.12 85.63 0.44 15.06 16 5 C -0.54 -31.57 9.39 25.60 0.24 -31.33 16 6 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 7 C 0.01 0.64 5.46 84.65 0.46 1.10 16 8 N -0.93 -56.09 13.29 21.45 0.28 -55.80 16 9 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 C 0.57 25.22 7.62 86.45 0.66 25.87 16 14 O -0.59 -30.62 14.00 -4.34 -0.06 -30.68 16 15 C -0.06 -2.02 6.72 40.35 0.27 -1.75 16 16 C -0.14 -3.81 7.43 22.58 0.17 -3.64 16 17 C -0.20 -4.62 6.53 22.03 0.14 -4.47 16 18 Br -0.02 -0.34 34.08 -20.37 -0.69 -1.03 16 19 C 0.07 1.44 11.32 83.48 0.95 2.38 16 20 N -0.40 -11.14 2.77 -510.91 -1.41 -12.56 16 21 C 0.10 2.34 6.11 86.38 0.53 2.87 16 22 C -0.16 -3.94 10.14 71.98 0.73 -3.21 16 23 H 0.10 1.99 8.12 -2.38 -0.02 1.97 16 24 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 1.65 6.57 -2.39 -0.02 1.64 16 26 H 0.10 3.08 4.82 -2.39 -0.01 3.07 16 27 H 0.08 2.68 8.06 -2.39 -0.02 2.66 16 28 H 0.00 0.00 7.49 -2.38 -0.02 -0.02 16 29 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 30 H 0.27 15.12 8.31 -92.71 -0.77 14.34 16 31 H 0.19 4.82 3.15 -2.91 -0.01 4.81 16 32 H 0.21 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.14 1.97 8.11 -2.38 -0.02 1.95 16 34 H 0.08 2.44 6.75 -2.39 -0.02 2.42 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.02 0.87 7.72 -2.39 -0.02 0.85 16 Total: -1.00 -73.23 324.89 4.86 -68.37 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.08 Total: 10.56 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 5.68 Total: 2.10 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -3.17 Total: -96.65 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.06 Total: -30.68 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 35 Polarization: -0.34 SS G_CDS: -0.69 Total: -1.03 kcal Total: -73.23 4.86 -68.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037846330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.204 kcal (2) G-P(sol) polarization free energy of solvation -73.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds