Wall clock time and date at job start Tue Mar 31 2020 14:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99701 * 2 1 4 4 H 1.48504 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46750 * 299.99495 * 3 2 1 6 6 H 1.48498 * 109.47076 * 59.99575 * 3 2 1 7 7 C 1.38804 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99994 * 162.55095 * 7 2 1 9 9 N 1.36933 * 120.00274 * 342.82344 * 7 2 1 10 10 C 1.46964 * 120.59941 * 151.29483 * 9 7 2 11 11 C 1.53807 * 108.39953 * 124.75704 * 10 9 7 12 12 N 1.46965 * 108.57986 * 49.64157 * 11 10 9 13 13 C 1.34777 * 120.59893 * 124.62428 * 12 11 10 14 14 O 1.21563 * 120.00292 * 180.02562 * 13 12 11 15 15 C 1.47701 * 119.99625 * 0.02562 * 13 12 11 16 16 C 1.39737 * 120.16670 * 89.72772 * 15 13 12 17 17 Cl 1.73607 * 120.08375 * 359.97367 * 16 15 13 18 18 C 1.38096 * 119.83171 * 179.71975 * 16 15 13 19 19 C 1.38334 * 120.16209 * 0.55605 * 18 16 15 20 20 C 1.38326 * 120.34318 * 359.71825 * 19 18 16 21 21 C 1.38102 * 120.16620 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.08375 * 179.97438 * 21 20 19 23 23 C 1.46969 * 118.80923 * 304.64744 * 12 11 10 24 24 C 1.46971 * 120.58954 * 331.57456 * 9 7 2 25 25 H 0.97004 * 120.00510 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.60931 * 244.54512 * 10 9 7 27 27 H 1.09004 * 109.60392 * 5.05580 * 10 9 7 28 28 H 1.09002 * 109.74746 * 289.85471 * 11 10 9 29 29 H 1.09000 * 109.67655 * 169.39066 * 11 10 9 30 30 H 1.08001 * 119.92084 * 180.27107 * 18 16 15 31 31 H 1.07998 * 119.82494 * 179.69738 * 19 18 16 32 32 H 1.07997 * 119.92189 * 180.02562 * 20 19 18 33 33 H 1.09001 * 109.60759 * 295.47709 * 23 12 11 34 34 H 1.08998 * 109.74755 * 175.05508 * 23 12 11 35 35 H 1.08993 * 109.60915 * 354.94812 * 24 9 7 36 36 H 1.09004 * 109.60752 * 115.28520 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0530 -1.2236 -0.2799 9 7 1.3715 -2.3614 0.3513 10 6 1.8066 -3.6519 -0.2012 11 6 2.1104 -4.6031 0.9687 12 7 0.9734 -4.5785 1.8996 13 6 0.3440 -5.7194 2.2442 14 8 -0.5956 -5.6864 3.0147 15 6 0.7960 -7.0098 1.6855 16 6 1.7733 -7.7578 2.3474 17 17 2.4613 -7.1727 3.8300 18 6 2.1866 -8.9661 1.8218 19 6 1.6440 -9.4309 0.6373 20 6 0.6804 -8.6934 -0.0267 21 6 0.2530 -7.4857 0.4891 22 17 -0.9560 -6.5617 -0.3464 23 6 0.5346 -3.2873 2.4477 24 6 0.2345 -2.3367 1.2822 25 1 -0.4851 0.8400 -0.0004 26 1 1.0135 -4.0708 -0.8204 27 1 2.7054 -3.5085 -0.8010 28 1 3.0128 -4.2756 1.4848 29 1 2.2521 -5.6157 0.5910 30 1 2.9387 -9.5475 2.3345 31 1 1.9748 -10.3743 0.2287 32 1 0.2611 -9.0630 -0.9508 33 1 1.3249 -2.8662 3.0691 34 1 -0.3654 -3.4280 3.0461 35 1 0.0947 -1.3247 1.6622 36 1 -0.6687 -2.6613 0.7653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048659373.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:25 Heat of formation + Delta-G solvation = 13.251603 kcal Electronic energy + Delta-G solvation = -23858.928444 eV Core-core repulsion = 20202.852909 eV Total energy + Delta-G solvation = -3656.075534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.37882 -38.66859 -36.90379 -36.74824 -36.39640 -33.91167 -31.79049 -31.15106 -30.96422 -30.03181 -26.99603 -24.50602 -23.37530 -23.05800 -22.64233 -20.73070 -19.07584 -17.81267 -17.02200 -16.41635 -16.25608 -15.78375 -14.98478 -14.77471 -14.62880 -14.32291 -13.96231 -13.68551 -13.50582 -13.32160 -13.27123 -12.57705 -12.48065 -12.37595 -11.95709 -11.74789 -11.29336 -11.25663 -11.23690 -11.03387 -10.85192 -10.73940 -10.54465 -10.25208 -9.97574 -9.87870 -9.62205 -9.12061 -9.00847 -8.59559 -8.27411 -6.71186 -5.84511 -3.29682 0.60402 0.68105 1.64652 2.07731 2.76285 3.03058 3.34122 3.35081 3.42619 3.44376 4.34494 4.43834 4.49440 4.71135 4.80773 5.03695 5.08756 5.25211 5.33047 5.64153 5.67381 5.72285 5.76773 5.83106 5.90209 6.10619 6.16804 6.32310 6.37599 6.48865 6.70069 6.84952 7.24772 7.54481 7.72926 7.80213 8.36311 8.40709 9.12346 9.75036 10.32078 11.22947 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.004181 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.723553 B = 6696.009590 C = 7247.566143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.005 3.995 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.133 3.867 11 C 0.091 3.909 12 N -0.578 5.578 13 C 0.557 3.443 14 O -0.533 6.533 15 C -0.095 4.095 16 C -0.002 4.002 17 Cl -0.044 7.044 18 C -0.109 4.109 19 C -0.086 4.086 20 C -0.108 4.108 21 C -0.002 4.002 22 Cl -0.033 7.033 23 C 0.088 3.912 24 C 0.160 3.840 25 H 0.255 0.745 26 H 0.026 0.974 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.599 -19.542 1.465 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.006 3.994 11 C -0.034 4.034 12 N -0.308 5.308 13 C 0.342 3.658 14 O -0.411 6.411 15 C -0.099 4.099 16 C -0.030 4.030 17 Cl -0.015 7.015 18 C -0.128 4.128 19 C -0.105 4.105 20 C -0.127 4.127 21 C -0.029 4.029 22 Cl -0.004 7.004 23 C -0.035 4.035 24 C 0.033 3.967 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.956 -19.171 1.918 19.669 hybrid contribution 0.403 0.949 -0.053 1.032 sum 4.359 -18.222 1.865 18.829 Atomic orbital electron populations 1.70027 1.05315 1.25620 1.53429 1.25073 0.95259 0.98524 1.00561 0.86225 0.79366 0.83840 0.77318 1.20209 1.21710 1.21481 1.19221 0.92717 0.84613 1.42011 0.91441 1.44001 1.36483 1.01530 1.49179 1.21338 0.98487 0.87307 0.92279 1.22458 0.88333 1.00087 0.92490 1.47952 1.31950 1.06429 1.44515 1.17835 0.83140 0.83117 0.81664 1.90778 1.28184 1.86220 1.35926 1.19820 0.97607 0.97517 0.94996 1.20822 0.96259 0.95404 0.90502 1.98415 1.83005 1.88244 1.31790 1.21104 1.00901 0.94199 0.96610 1.21180 0.95362 0.99907 0.94032 1.21144 0.97782 0.92705 1.01036 1.20902 0.94750 0.94308 0.92975 1.98452 1.53035 1.72461 1.76406 1.22584 1.00006 0.82260 0.98643 1.21185 0.89096 0.98481 0.87909 0.93511 0.95573 0.91543 0.91287 0.91678 0.83814 0.83737 0.83712 0.91830 0.89987 0.88154 0.95740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.61 11.20 55.49 0.62 -24.99 16 2 C 0.00 0.13 4.91 -17.44 -0.09 0.04 16 3 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.26 -6.77 9.57 -15.06 -0.14 -6.91 16 8 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -14.28 2.96 -171.77 -0.51 -14.79 16 10 C 0.13 2.67 6.70 -3.37 -0.02 2.65 16 11 C 0.09 1.56 6.52 -3.37 -0.02 1.54 16 12 N -0.58 -10.83 2.95 -173.38 -0.51 -11.34 16 13 C 0.56 10.31 5.24 -12.39 -0.07 10.25 16 14 O -0.53 -11.49 16.51 5.31 0.09 -11.40 16 15 C -0.09 -1.43 3.62 -104.91 -0.38 -1.81 16 16 C 0.00 -0.03 6.35 -39.07 -0.25 -0.28 16 17 Cl -0.04 -0.58 28.04 -51.86 -1.45 -2.03 16 18 C -0.11 -0.99 9.82 -39.60 -0.39 -1.38 16 19 C -0.09 -0.66 10.03 -39.51 -0.40 -1.06 16 20 C -0.11 -1.03 9.82 -39.60 -0.39 -1.42 16 21 C 0.00 -0.02 6.23 -39.07 -0.24 -0.26 16 22 Cl -0.03 -0.50 28.04 -51.86 -1.45 -1.95 16 23 C 0.09 1.80 6.59 -3.60 -0.02 1.77 16 24 C 0.16 3.80 5.51 -3.60 -0.02 3.78 16 25 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.98 6.22 -51.93 -0.32 0.65 16 30 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.08 1.68 7.00 -51.93 -0.36 1.32 16 35 H 0.10 2.63 6.00 -51.93 -0.31 2.32 16 36 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 331.61 15.07 5.00 5.00 Total: -1.00 -31.33 331.61 -9.60 -40.93 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -3.92 Total: -2.49 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -2.43 Total: 6.92 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.40 Total: -51.12 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -2.91 Total: -3.98 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.33 -9.60 -40.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048659373.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.179 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds