Wall clock time and date at job start Tue Mar 31 2020 14:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86809 * 119.99701 * 2 1 4 4 H 1.48504 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46750 * 299.99495 * 3 2 1 6 6 H 1.48498 * 109.47076 * 59.99575 * 3 2 1 7 7 C 1.38804 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99994 * 162.55095 * 7 2 1 9 9 N 1.36933 * 120.00274 * 342.82344 * 7 2 1 10 10 C 1.46964 * 120.59941 * 151.29483 * 9 7 2 11 11 C 1.53807 * 108.39953 * 124.75704 * 10 9 7 12 12 N 1.46965 * 108.57986 * 49.64157 * 11 10 9 13 13 C 1.34777 * 120.59893 * 124.62428 * 12 11 10 14 14 O 1.21563 * 120.00292 * 180.02562 * 13 12 11 15 15 C 1.47701 * 119.99625 * 0.02562 * 13 12 11 16 16 C 1.39737 * 120.16670 * 89.72772 * 15 13 12 17 17 Cl 1.73607 * 120.08375 * 359.97367 * 16 15 13 18 18 C 1.38096 * 119.83171 * 179.71975 * 16 15 13 19 19 C 1.38334 * 120.16209 * 0.55605 * 18 16 15 20 20 C 1.38326 * 120.34318 * 359.71825 * 19 18 16 21 21 C 1.38102 * 120.16620 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.08375 * 179.97438 * 21 20 19 23 23 C 1.46969 * 118.80923 * 304.64744 * 12 11 10 24 24 C 1.46971 * 120.58954 * 331.57456 * 9 7 2 25 25 H 0.97004 * 120.00510 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.60931 * 244.54512 * 10 9 7 27 27 H 1.09004 * 109.60392 * 5.05580 * 10 9 7 28 28 H 1.09002 * 109.74746 * 289.85471 * 11 10 9 29 29 H 1.09000 * 109.67655 * 169.39066 * 11 10 9 30 30 H 1.08001 * 119.92084 * 180.27107 * 18 16 15 31 31 H 1.07998 * 119.82494 * 179.69738 * 19 18 16 32 32 H 1.07997 * 119.92189 * 180.02562 * 20 19 18 33 33 H 1.09001 * 109.60759 * 295.47709 * 23 12 11 34 34 H 1.08998 * 109.74755 * 175.05508 * 23 12 11 35 35 H 1.08993 * 109.60915 * 354.94812 * 24 9 7 36 36 H 1.09004 * 109.60752 * 115.28520 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0530 -1.2236 -0.2799 9 7 1.3715 -2.3614 0.3513 10 6 1.8066 -3.6519 -0.2012 11 6 2.1104 -4.6031 0.9687 12 7 0.9734 -4.5785 1.8996 13 6 0.3440 -5.7194 2.2442 14 8 -0.5956 -5.6864 3.0147 15 6 0.7960 -7.0098 1.6855 16 6 1.7733 -7.7578 2.3474 17 17 2.4613 -7.1727 3.8300 18 6 2.1866 -8.9661 1.8218 19 6 1.6440 -9.4309 0.6373 20 6 0.6804 -8.6934 -0.0267 21 6 0.2530 -7.4857 0.4891 22 17 -0.9560 -6.5617 -0.3464 23 6 0.5346 -3.2873 2.4477 24 6 0.2345 -2.3367 1.2822 25 1 -0.4851 0.8400 -0.0004 26 1 1.0135 -4.0708 -0.8204 27 1 2.7054 -3.5085 -0.8010 28 1 3.0128 -4.2756 1.4848 29 1 2.2521 -5.6157 0.5910 30 1 2.9387 -9.5475 2.3345 31 1 1.9748 -10.3743 0.2287 32 1 0.2611 -9.0630 -0.9508 33 1 1.3249 -2.8662 3.0691 34 1 -0.3654 -3.4280 3.0461 35 1 0.0947 -1.3247 1.6622 36 1 -0.6687 -2.6613 0.7653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048659373.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:25 Heat of formation + Delta-G solvation = -4.984217 kcal Electronic energy + Delta-G solvation = -23859.719208 eV Core-core repulsion = 20202.852909 eV Total energy + Delta-G solvation = -3656.866299 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60556 -39.83581 -38.42083 -37.88732 -37.37169 -35.68500 -33.19993 -32.79647 -31.78397 -31.56888 -28.74928 -25.98765 -24.94056 -24.17922 -23.89430 -22.25352 -20.56579 -19.23001 -18.30836 -17.76790 -17.35588 -17.24486 -16.73854 -15.92493 -15.75859 -15.51456 -15.49435 -15.24800 -15.06443 -14.88730 -14.74671 -13.94959 -13.51288 -13.46799 -13.38664 -13.17823 -12.76634 -12.70912 -12.51209 -12.30326 -12.23307 -12.19848 -12.08439 -12.04521 -11.89241 -11.69505 -11.09689 -10.62542 -10.06678 -9.91733 -9.87414 -8.68237 -7.88724 -5.37438 -0.27993 -0.13044 0.70198 1.12628 1.36395 1.47676 1.50147 1.60081 1.88768 2.31189 2.50632 3.20519 3.26914 3.55358 3.70807 3.87648 4.09836 4.14982 4.17803 4.23435 4.26860 4.38375 4.43957 4.61085 4.73458 4.79566 4.87369 5.00412 5.01368 5.11654 5.19572 5.40447 5.49777 5.57916 5.65360 6.32971 6.34475 6.95259 7.08810 7.77568 8.31882 9.17085 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.004181 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.723553 B = 6696.009590 C = 7247.566143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.048 4.048 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.261 4.261 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.132 3.868 11 C 0.105 3.895 12 N -0.583 5.583 13 C 0.561 3.439 14 O -0.573 6.573 15 C -0.127 4.127 16 C -0.014 4.014 17 Cl -0.057 7.057 18 C -0.096 4.096 19 C -0.059 4.059 20 C -0.099 4.099 21 C -0.018 4.018 22 Cl -0.063 7.063 23 C 0.102 3.898 24 C 0.174 3.826 25 H 0.250 0.750 26 H 0.017 0.983 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.177 0.823 31 H 0.196 0.804 32 H 0.172 0.828 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.072 0.928 36 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.211 -22.656 0.813 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.391 4.391 8 H 0.094 0.906 9 N -0.328 5.328 10 C 0.006 3.994 11 C -0.019 4.019 12 N -0.313 5.313 13 C 0.349 3.651 14 O -0.454 6.454 15 C -0.132 4.132 16 C -0.042 4.042 17 Cl -0.028 7.028 18 C -0.115 4.115 19 C -0.077 4.077 20 C -0.118 4.118 21 C -0.046 4.046 22 Cl -0.034 7.034 23 C -0.022 4.022 24 C 0.047 3.953 25 H 0.059 0.941 26 H 0.035 0.965 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.195 0.805 31 H 0.213 0.787 32 H 0.190 0.810 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 6.608 -22.324 1.255 23.315 hybrid contribution -0.385 1.743 0.104 1.788 sum 6.223 -20.580 1.358 21.544 Atomic orbital electron populations 1.70187 1.06884 1.25923 1.55211 1.25828 0.95902 1.01643 1.00966 0.85203 0.78832 0.79771 0.76575 1.18660 1.22168 1.21928 1.19586 0.93164 0.85489 1.40838 0.90642 1.44220 1.36236 1.02629 1.49688 1.21476 0.98497 0.85968 0.93480 1.22358 0.87794 1.00770 0.90967 1.47983 1.32499 1.05970 1.44867 1.18367 0.81999 0.84135 0.80625 1.90739 1.29851 1.87069 1.37728 1.19573 1.00367 0.96432 0.96780 1.21025 0.96337 0.96579 0.90212 1.98411 1.83061 1.88640 1.32702 1.21576 1.00641 0.92511 0.96758 1.21776 0.92866 1.00666 0.92420 1.21562 0.97483 0.90911 1.01800 1.21106 0.94923 0.95654 0.92908 1.98442 1.54523 1.73560 1.76905 1.22194 1.00055 0.82856 0.97056 1.20840 0.88168 0.97609 0.88645 0.94072 0.96546 0.90195 0.90473 0.88868 0.80523 0.78720 0.81014 0.91138 0.90646 0.90984 0.98977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.27 11.20 21.65 0.24 -55.03 16 2 C -0.05 -2.63 4.91 84.86 0.42 -2.21 16 3 Si 0.97 44.08 29.59 68.60 2.03 46.11 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.26 -13.86 9.57 84.03 0.80 -13.06 16 8 H 0.08 3.83 7.89 -2.91 -0.02 3.81 16 9 N -0.60 -29.83 2.96 -697.36 -2.06 -31.90 16 10 C 0.13 5.26 6.70 86.56 0.58 5.84 16 11 C 0.10 3.49 6.52 86.56 0.56 4.05 16 12 N -0.58 -22.05 2.95 -820.74 -2.42 -24.47 16 13 C 0.56 20.94 5.24 86.74 0.45 21.39 16 14 O -0.57 -25.54 16.51 -3.91 -0.06 -25.60 16 15 C -0.13 -3.66 3.62 -20.05 -0.07 -3.73 16 16 C -0.01 -0.32 6.35 22.60 0.14 -0.17 16 17 Cl -0.06 -1.42 28.04 -2.72 -0.08 -1.49 16 18 C -0.10 -1.27 9.82 22.26 0.22 -1.05 16 19 C -0.06 -0.55 10.03 22.31 0.22 -0.32 16 20 C -0.10 -1.47 9.82 22.26 0.22 -1.25 16 21 C -0.02 -0.46 6.23 22.60 0.14 -0.32 16 22 Cl -0.06 -1.92 28.04 -2.72 -0.08 -1.99 16 23 C 0.10 4.33 6.59 86.41 0.57 4.90 16 24 C 0.17 8.71 5.51 86.41 0.48 9.18 16 25 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 26 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.08 2.94 7.93 -2.39 -0.02 2.92 16 28 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.09 2.61 6.22 -2.39 -0.01 2.59 16 30 H 0.18 1.21 8.06 -2.91 -0.02 1.18 16 31 H 0.20 -0.01 8.06 -2.91 -0.02 -0.03 16 32 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 33 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.08 3.27 7.00 -2.39 -0.02 3.25 16 35 H 0.07 4.00 6.00 -2.39 -0.01 3.99 16 36 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 Total: -1.00 -72.17 331.61 3.42 -68.75 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: 1.11 Total: 2.36 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 4.74 Total: 23.26 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -4.24 Total: -111.40 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.06 Total: -25.60 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 17 Polarization: -3.33 SS G_CDS: -0.15 Total: -3.48 kcal Total: -72.17 3.42 -68.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048659373.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.765 kcal (2) G-P(sol) polarization free energy of solvation -72.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds