Wall clock time and date at job start Tue Mar 31 2020 15:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47168 * 2 1 4 4 N 1.46504 * 109.46880 * 240.00406 * 2 1 3 5 5 C 1.35598 * 125.68023 * 54.71314 * 4 2 1 6 6 C 1.35507 * 108.85762 * 179.82955 * 5 4 2 7 7 Br 1.89096 * 126.07093 * 180.14449 * 6 5 4 8 8 C 1.39876 * 107.85353 * 0.43156 * 6 5 4 9 9 C 1.37647 * 125.67145 * 235.02444 * 4 2 1 10 10 C 1.46670 * 126.22864 * 359.97438 * 9 4 2 11 11 O 1.21696 * 119.99915 * 5.26045 * 10 9 4 12 12 N 1.34773 * 120.00131 * 185.25399 * 10 9 4 13 13 C 1.46509 * 119.99990 * 185.10272 * 12 10 9 14 14 H 1.08993 * 109.46881 * 325.00135 * 13 12 10 15 15 C 1.52999 * 109.46640 * 85.00300 * 13 12 10 16 16 C 1.50694 * 109.46830 * 205.00319 * 13 12 10 17 17 H 1.07995 * 120.00292 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99684 * 180.02562 * 16 13 12 19 19 N 1.31520 * 120.00223 * 179.97438 * 18 16 13 20 20 Si 1.86802 * 119.99963 * 359.97438 * 18 16 13 21 21 H 1.48502 * 109.47128 * 90.00617 * 20 18 16 22 22 H 1.48500 * 109.46947 * 210.00382 * 20 18 16 23 23 H 1.48494 * 109.47314 * 330.00281 * 20 18 16 24 24 H 1.08999 * 109.47277 * 300.00058 * 1 2 3 25 25 H 1.09002 * 109.47393 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47733 * 59.99787 * 1 2 3 27 27 H 1.08995 * 109.47378 * 120.00519 * 2 1 3 28 28 H 1.08993 * 109.47191 * 60.00538 * 3 2 1 29 29 H 1.09003 * 109.46743 * 180.02562 * 3 2 1 30 30 H 1.08992 * 109.47138 * 300.00049 * 3 2 1 31 31 H 1.08003 * 125.56453 * 359.97438 * 5 4 2 32 32 H 1.07993 * 126.45993 * 179.70053 * 8 6 5 33 33 H 0.96996 * 119.99890 * 5.10265 * 12 10 9 34 34 H 1.09003 * 109.46344 * 180.02562 * 15 13 12 35 35 H 1.09001 * 109.47227 * 299.99766 * 15 13 12 36 36 H 1.08993 * 109.47618 * 60.00287 * 15 13 12 37 37 H 0.96999 * 120.00131 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 1.6819 -0.3907 -2.4752 6 6 2.3308 -1.2392 -3.3091 7 35 2.2163 -1.2498 -5.1966 8 6 3.0950 -2.1099 -2.5254 9 6 2.8901 -1.7556 -1.2086 10 6 3.4921 -2.3967 -0.0348 11 8 3.1587 -2.0532 1.0841 12 7 4.4143 -3.3662 -0.1952 13 6 4.9334 -4.0839 0.9718 14 1 4.9989 -3.4009 1.8187 15 6 3.9928 -5.2393 1.3198 16 6 6.3033 -4.6281 0.6584 17 1 6.7430 -4.4570 -0.3130 18 6 6.9947 -5.3454 1.6115 19 7 8.1900 -5.8209 1.3379 20 14 6.2337 -5.6420 3.2915 21 1 5.4531 -6.9050 3.2654 22 1 7.3089 -5.7455 4.3106 23 1 5.3343 -4.5112 3.6341 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.0089 0.3973 -2.7795 32 1 3.7262 -2.9094 -2.8839 33 1 4.7344 -3.5889 -1.0834 34 1 4.3789 -5.7729 2.1884 35 1 3.0020 -4.8456 1.5465 36 1 3.9274 -5.9223 0.4730 37 1 8.6766 -6.3252 2.0085 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:38 Heat of formation + Delta-G solvation = 8.719878 kcal Electronic energy + Delta-G solvation = -20275.157360 eV Core-core repulsion = 17099.581559 eV Total energy + Delta-G solvation = -3175.575801 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.56005 -38.66851 -35.72538 -34.98108 -32.47118 -31.60628 -30.51929 -29.00741 -28.42445 -27.52756 -25.23567 -23.36166 -22.07798 -20.87185 -19.74347 -19.31744 -17.72754 -16.53198 -15.62737 -15.54046 -15.25267 -14.83518 -14.40804 -14.08708 -13.93263 -13.29956 -13.06504 -12.93661 -12.87483 -12.57286 -12.49265 -12.26276 -12.20655 -11.88767 -11.64735 -11.36515 -11.19092 -10.83047 -10.80175 -10.24049 -10.21314 -9.73923 -9.32214 -9.25739 -8.79484 -8.67307 -8.39377 -8.08031 -6.22434 -4.25447 1.56906 1.73274 2.42006 2.74731 3.21543 3.33742 3.37082 3.70812 3.89510 4.29493 4.47814 4.73877 4.78408 5.02357 5.09463 5.12047 5.17263 5.24980 5.40963 5.44543 5.59804 5.70280 5.83528 5.91788 5.98920 6.26505 6.31980 6.48673 6.51258 6.78625 6.85204 7.07261 7.16483 7.20433 7.46200 8.09062 8.45623 8.70738 8.81756 9.37347 10.89675 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.003809 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.108094 B = 7349.178957 C = 8776.083571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.102 3.898 3 C -0.159 4.159 4 N -0.394 5.394 5 C 0.047 3.953 6 C -0.176 4.176 7 Br -0.038 7.038 8 C -0.119 4.119 9 C -0.024 4.024 10 C 0.578 3.422 11 O -0.562 6.562 12 N -0.683 5.683 13 C 0.238 3.762 14 H 0.052 0.948 15 C -0.162 4.162 16 C -0.536 4.536 17 H 0.082 0.918 18 C 0.079 3.921 19 N -0.891 5.891 20 Si 0.885 3.115 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.262 1.262 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.139 0.861 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.171 0.829 32 H 0.153 0.847 33 H 0.399 0.601 34 H 0.049 0.951 35 H 0.034 0.966 36 H 0.055 0.945 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.870 12.608 -10.084 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.002 3.998 3 C -0.217 4.217 4 N -0.067 5.067 5 C -0.092 4.092 6 C -0.262 4.262 7 Br 0.046 6.954 8 C -0.146 4.146 9 C -0.139 4.139 10 C 0.364 3.636 11 O -0.444 6.444 12 N -0.330 5.330 13 C 0.135 3.865 14 H 0.070 0.930 15 C -0.220 4.220 16 C -0.574 4.574 17 H 0.100 0.900 18 C -0.124 4.124 19 N -0.527 5.527 20 Si 0.715 3.285 21 H -0.203 1.203 22 H -0.221 1.221 23 H -0.187 1.187 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.156 0.844 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.188 0.812 32 H 0.171 0.829 33 H 0.234 0.766 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.068 12.865 -9.539 22.687 hybrid contribution -0.130 -0.392 0.713 0.824 sum -16.198 12.473 -8.826 22.268 Atomic orbital electron populations 1.22145 0.93375 1.03219 1.02931 1.22094 0.95327 0.94345 0.88059 1.22153 1.02515 0.94230 1.02812 1.44259 1.32630 1.23672 1.06093 1.21627 1.03207 1.01989 0.82380 1.20845 1.09939 1.05332 0.90041 1.96567 1.98324 1.98871 1.01686 1.21255 1.02110 1.01136 0.90065 1.20420 1.02481 0.95988 0.95012 1.16955 0.80066 0.80110 0.86504 1.90665 1.63578 1.64679 1.25438 1.45937 1.39466 1.35294 1.12325 1.19173 0.92716 0.89747 0.84882 0.93039 1.22468 0.98585 1.00052 1.00878 1.21010 0.98662 1.35223 1.02474 0.90028 1.24818 0.94613 0.94600 0.98405 1.69866 1.12098 1.35690 1.35084 0.86886 0.78361 0.79386 0.83909 1.20260 1.22112 1.18691 0.90389 0.91629 0.92102 0.84386 0.90450 0.91565 0.92157 0.81180 0.82900 0.76648 0.93270 0.94641 0.92582 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.16 37.15 0.34 -1.10 16 2 C 0.10 1.21 3.48 -67.93 -0.24 0.97 16 3 C -0.16 -1.53 9.30 37.16 0.35 -1.19 16 4 N -0.39 -5.27 2.64 -105.77 -0.28 -5.55 16 5 C 0.05 0.55 10.30 -16.86 -0.17 0.38 16 6 C -0.18 -2.26 6.53 -39.94 -0.26 -2.52 16 7 Br -0.04 -0.43 34.08 -68.01 -2.32 -2.75 16 8 C -0.12 -1.70 10.33 -39.10 -0.40 -2.11 16 9 C -0.02 -0.39 6.88 -81.98 -0.56 -0.95 16 10 C 0.58 11.06 7.74 -12.86 -0.10 10.96 16 11 O -0.56 -12.03 14.00 5.19 0.07 -11.96 16 12 N -0.68 -13.63 5.04 -56.25 -0.28 -13.92 16 13 C 0.24 5.59 2.19 -69.08 -0.15 5.44 16 14 H 0.05 1.32 6.57 -51.93 -0.34 0.98 16 15 C -0.16 -3.55 8.96 37.16 0.33 -3.21 16 16 C -0.54 -14.31 9.31 -34.44 -0.32 -14.63 16 17 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 18 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 19 N -0.89 -26.16 13.96 55.43 0.77 -25.38 16 20 Si 0.88 21.42 24.37 -169.99 -4.14 17.28 16 21 H -0.28 -6.46 6.87 56.52 0.39 -6.07 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.46 7.70 -51.93 -0.40 0.06 16 27 H 0.14 2.04 5.33 -51.93 -0.28 1.76 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.49 8.02 -51.93 -0.42 0.07 16 31 H 0.17 1.48 7.90 -52.48 -0.41 1.07 16 32 H 0.15 2.01 7.49 -52.49 -0.39 1.62 16 33 H 0.40 7.15 7.48 -40.82 -0.31 6.84 16 34 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 323.14 15.07 4.87 4.87 Total: -1.00 -30.28 323.14 -7.45 -37.73 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.85 Total: 5.54 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -1.29 Total: -5.86 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.21 Total: -44.85 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.07 Total: -11.96 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.14 Total: 17.28 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.32 Total: -2.75 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.28 -7.45 -37.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.446 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds