Wall clock time and date at job start Tue Mar 31 2020 15:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47168 * 2 1 4 4 N 1.46504 * 109.46880 * 240.00406 * 2 1 3 5 5 C 1.35598 * 125.68023 * 54.71314 * 4 2 1 6 6 C 1.35507 * 108.85762 * 179.82955 * 5 4 2 7 7 Br 1.89096 * 126.07093 * 180.14449 * 6 5 4 8 8 C 1.39876 * 107.85353 * 0.43156 * 6 5 4 9 9 C 1.37647 * 125.67145 * 235.02444 * 4 2 1 10 10 C 1.46670 * 126.22864 * 359.97438 * 9 4 2 11 11 O 1.21696 * 119.99915 * 5.26045 * 10 9 4 12 12 N 1.34773 * 120.00131 * 185.25399 * 10 9 4 13 13 C 1.46509 * 119.99990 * 185.10272 * 12 10 9 14 14 H 1.08993 * 109.46881 * 325.00135 * 13 12 10 15 15 C 1.52999 * 109.46640 * 85.00300 * 13 12 10 16 16 C 1.50694 * 109.46830 * 205.00319 * 13 12 10 17 17 H 1.07995 * 120.00292 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99684 * 180.02562 * 16 13 12 19 19 N 1.31520 * 120.00223 * 179.97438 * 18 16 13 20 20 Si 1.86802 * 119.99963 * 359.97438 * 18 16 13 21 21 H 1.48502 * 109.47128 * 90.00617 * 20 18 16 22 22 H 1.48500 * 109.46947 * 210.00382 * 20 18 16 23 23 H 1.48494 * 109.47314 * 330.00281 * 20 18 16 24 24 H 1.08999 * 109.47277 * 300.00058 * 1 2 3 25 25 H 1.09002 * 109.47393 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47733 * 59.99787 * 1 2 3 27 27 H 1.08995 * 109.47378 * 120.00519 * 2 1 3 28 28 H 1.08993 * 109.47191 * 60.00538 * 3 2 1 29 29 H 1.09003 * 109.46743 * 180.02562 * 3 2 1 30 30 H 1.08992 * 109.47138 * 300.00049 * 3 2 1 31 31 H 1.08003 * 125.56453 * 359.97438 * 5 4 2 32 32 H 1.07993 * 126.45993 * 179.70053 * 8 6 5 33 33 H 0.96996 * 119.99890 * 5.10265 * 12 10 9 34 34 H 1.09003 * 109.46344 * 180.02562 * 15 13 12 35 35 H 1.09001 * 109.47227 * 299.99766 * 15 13 12 36 36 H 1.08993 * 109.47618 * 60.00287 * 15 13 12 37 37 H 0.96999 * 120.00131 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 1.6819 -0.3907 -2.4752 6 6 2.3308 -1.2392 -3.3091 7 35 2.2163 -1.2498 -5.1966 8 6 3.0950 -2.1099 -2.5254 9 6 2.8901 -1.7556 -1.2086 10 6 3.4921 -2.3967 -0.0348 11 8 3.1587 -2.0532 1.0841 12 7 4.4143 -3.3662 -0.1952 13 6 4.9334 -4.0839 0.9718 14 1 4.9989 -3.4009 1.8187 15 6 3.9928 -5.2393 1.3198 16 6 6.3033 -4.6281 0.6584 17 1 6.7430 -4.4570 -0.3130 18 6 6.9947 -5.3454 1.6115 19 7 8.1900 -5.8209 1.3379 20 14 6.2337 -5.6420 3.2915 21 1 5.4531 -6.9050 3.2654 22 1 7.3089 -5.7455 4.3106 23 1 5.3343 -4.5112 3.6341 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.0089 0.3973 -2.7795 32 1 3.7262 -2.9094 -2.8839 33 1 4.7344 -3.5889 -1.0834 34 1 4.3789 -5.7729 2.1884 35 1 3.0020 -4.8456 1.5465 36 1 3.9274 -5.9223 0.4730 37 1 8.6766 -6.3252 2.0085 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050392619.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:38 Heat of formation + Delta-G solvation = -10.344612 kcal Electronic energy + Delta-G solvation = -20275.984058 eV Core-core repulsion = 17099.581559 eV Total energy + Delta-G solvation = -3176.402499 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.64164 -40.20917 -36.99583 -36.40389 -34.42868 -32.63940 -32.11475 -30.13252 -29.56514 -28.24504 -27.24445 -24.73311 -23.15263 -22.30970 -21.16624 -20.64960 -19.07493 -18.19934 -17.38940 -16.95453 -16.45715 -16.00257 -15.74147 -15.40415 -14.99918 -14.96557 -14.78929 -14.14616 -13.96357 -13.83194 -13.73567 -13.54355 -13.23099 -13.15067 -13.04357 -12.79058 -12.46846 -12.18039 -12.10886 -11.72967 -11.60244 -11.30331 -11.18437 -10.88171 -10.79179 -10.03324 -9.69966 -9.23650 -8.37875 -6.44584 0.38321 0.76435 1.28189 1.36102 1.39061 1.45418 1.67380 2.26294 2.30378 2.49843 2.98164 3.62949 3.74762 3.90628 3.93892 4.15958 4.20473 4.42698 4.48187 4.53014 4.61537 4.65065 4.67728 4.75907 4.85254 4.91814 4.96910 5.10492 5.18538 5.27825 5.39961 5.44371 5.57977 5.76525 6.10494 6.13231 6.56149 6.76254 7.14988 7.30669 8.77438 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.003809 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.108094 B = 7349.178957 C = 8776.083571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.096 3.904 3 C -0.153 4.153 4 N -0.394 5.394 5 C 0.073 3.927 6 C -0.193 4.193 7 Br -0.021 7.021 8 C -0.112 4.112 9 C -0.060 4.060 10 C 0.578 3.422 11 O -0.590 6.590 12 N -0.687 5.687 13 C 0.245 3.755 14 H 0.028 0.972 15 C -0.155 4.155 16 C -0.535 4.535 17 H 0.056 0.944 18 C 0.030 3.970 19 N -0.933 5.933 20 Si 0.940 3.060 21 H -0.258 1.258 22 H -0.292 1.292 23 H -0.260 1.260 24 H 0.095 0.905 25 H 0.049 0.951 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.209 0.791 32 H 0.157 0.843 33 H 0.407 0.593 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.323 13.942 -10.797 25.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.005 4.005 3 C -0.211 4.211 4 N -0.066 5.066 5 C -0.068 4.068 6 C -0.278 4.278 7 Br 0.062 6.938 8 C -0.139 4.139 9 C -0.174 4.174 10 C 0.367 3.633 11 O -0.474 6.474 12 N -0.335 5.335 13 C 0.140 3.860 14 H 0.046 0.954 15 C -0.213 4.213 16 C -0.573 4.573 17 H 0.074 0.926 18 C -0.170 4.170 19 N -0.572 5.572 20 Si 0.767 3.233 21 H -0.184 1.184 22 H -0.219 1.219 23 H -0.185 1.185 24 H 0.114 0.886 25 H 0.068 0.932 26 H 0.102 0.898 27 H 0.121 0.879 28 H 0.114 0.886 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.226 0.774 32 H 0.175 0.825 33 H 0.243 0.757 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.535 14.201 -10.268 25.508 hybrid contribution 0.621 -0.708 0.797 1.234 sum -17.913 13.493 -9.471 24.344 Atomic orbital electron populations 1.22121 0.90917 1.02853 1.05002 1.22189 0.97195 0.94825 0.86265 1.22131 1.01000 0.93056 1.04870 1.44462 1.31924 1.22955 1.07265 1.22236 1.01858 1.01473 0.81197 1.21002 1.10210 1.05468 0.91152 1.96586 1.98279 1.98858 1.00043 1.21425 1.01641 1.01094 0.89785 1.19934 1.05123 0.98295 0.94063 1.17314 0.79318 0.79388 0.87280 1.90652 1.64396 1.65400 1.26912 1.45739 1.40187 1.35856 1.11696 1.18827 0.91778 0.89967 0.85404 0.95377 1.22353 0.98535 0.99372 1.01045 1.21211 1.00133 1.34621 1.01354 0.92625 1.25556 0.94927 0.94551 1.01929 1.69978 1.13588 1.37079 1.36515 0.85993 0.77747 0.79934 0.79652 1.18390 1.21933 1.18512 0.88591 0.93175 0.89759 0.87901 0.88597 0.93882 0.89893 0.77418 0.82510 0.75696 0.93743 0.93502 0.91567 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.16 71.98 0.66 -1.67 16 2 C 0.10 2.11 3.48 44.99 0.16 2.27 16 3 C -0.15 -2.61 9.30 71.98 0.67 -1.94 16 4 N -0.39 -9.93 2.64 -488.56 -1.29 -11.21 16 5 C 0.07 1.48 10.30 83.48 0.86 2.34 16 6 C -0.19 -4.53 6.53 22.03 0.14 -4.39 16 7 Br -0.02 -0.43 34.08 -20.37 -0.69 -1.13 16 8 C -0.11 -3.10 10.33 22.58 0.23 -2.87 16 9 C -0.06 -1.90 6.88 40.35 0.28 -1.62 16 10 C 0.58 22.56 7.74 86.45 0.67 23.23 16 11 O -0.59 -25.92 14.00 -4.34 -0.06 -25.98 16 12 N -0.69 -27.98 5.04 -450.08 -2.27 -30.25 16 13 C 0.24 11.65 2.19 44.24 0.10 11.75 16 14 H 0.03 1.48 6.57 -2.39 -0.02 1.47 16 15 C -0.16 -6.70 8.96 71.98 0.65 -6.05 16 16 C -0.54 -29.29 9.31 25.60 0.24 -29.05 16 17 H 0.06 3.26 7.98 -2.91 -0.02 3.24 16 18 C 0.03 1.71 5.45 84.65 0.46 2.17 16 19 N -0.93 -55.92 13.96 21.45 0.30 -55.62 16 20 Si 0.94 44.29 24.37 68.60 1.67 45.96 16 21 H -0.26 -11.39 6.87 99.48 0.68 -10.71 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.26 -12.12 6.53 99.48 0.65 -11.47 16 24 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 0.90 7.70 -2.39 -0.02 0.88 16 27 H 0.10 3.07 5.33 -2.39 -0.01 3.06 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.03 8.02 -2.39 -0.02 1.01 16 31 H 0.21 2.56 7.90 -2.91 -0.02 2.54 16 32 H 0.16 4.05 7.49 -2.91 -0.02 4.03 16 33 H 0.41 14.97 7.48 -92.71 -0.69 14.28 16 34 H 0.04 1.95 3.27 -2.39 -0.01 1.94 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -66.62 323.14 3.09 -63.54 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.32 Total: 20.53 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 5.11 Total: -5.84 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -3.26 Total: -97.08 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.06 Total: -25.98 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.67 Total: 45.96 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -0.69 Total: -1.13 kcal Total: -66.62 3.09 -63.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392619.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.193 kcal (2) G-P(sol) polarization free energy of solvation -66.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds