Wall clock time and date at job start Tue Mar 31 2020 15:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46704 * 2 1 4 4 N 1.46506 * 109.46812 * 119.99804 * 2 1 3 5 5 C 1.35592 * 125.67410 * 294.90625 * 4 2 1 6 6 C 1.35507 * 108.85553 * 179.97438 * 5 4 2 7 7 Br 1.89101 * 126.07610 * 180.02562 * 6 5 4 8 8 C 1.39875 * 107.84994 * 359.97438 * 6 5 4 9 9 C 1.37637 * 125.67269 * 114.59900 * 4 2 1 10 10 C 1.46671 * 126.22603 * 0.03798 * 9 4 2 11 11 O 1.21697 * 120.00132 * 5.11744 * 10 9 4 12 12 N 1.34775 * 119.99935 * 185.12450 * 10 9 4 13 13 C 1.46504 * 120.00131 * 185.09386 * 12 10 9 14 14 C 1.52997 * 109.47004 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.46833 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00423 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99752 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00387 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99726 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47467 * 59.99766 * 19 17 15 21 21 H 1.48505 * 109.47287 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47188 * 299.99708 * 19 17 15 23 23 H 1.08995 * 109.46919 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47042 * 60.00194 * 1 2 3 25 25 H 1.08998 * 109.47541 * 300.00017 * 1 2 3 26 26 H 1.08998 * 109.47541 * 239.99983 * 2 1 3 27 27 H 1.09006 * 109.47302 * 60.00002 * 3 2 1 28 28 H 1.09005 * 109.47112 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47627 * 299.99889 * 3 2 1 30 30 H 1.08001 * 125.57752 * 0.02562 * 5 4 2 31 31 H 1.08008 * 126.45252 * 180.02562 * 8 6 5 32 32 H 0.97003 * 119.99828 * 5.09237 * 12 10 9 33 33 H 1.08997 * 109.46923 * 300.00101 * 13 12 10 34 34 H 1.08999 * 109.47010 * 59.99528 * 13 12 10 35 35 H 1.08999 * 109.47193 * 299.99454 * 14 13 12 36 36 H 1.08999 * 109.47501 * 59.99977 * 14 13 12 37 37 H 0.96998 * 120.00291 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.8445 -0.2754 2.4753 6 6 2.4320 -1.1676 3.3090 7 35 2.4809 -1.0630 5.1965 8 6 2.9949 -2.1804 2.5254 9 6 2.7246 -1.8719 1.2090 10 6 3.1206 -2.6577 0.0356 11 8 2.9053 -2.2309 -1.0835 12 7 3.7228 -3.8527 0.1968 13 6 4.2186 -4.5864 -0.9703 14 6 4.8541 -5.9012 -0.5138 15 6 5.3636 -6.6563 -1.7144 16 1 5.2462 -6.2399 -2.7040 17 6 5.9795 -7.8788 -1.5495 18 7 6.1220 -8.3861 -0.3446 19 14 6.6116 -8.8144 -3.0376 20 1 7.6275 -7.9932 -3.7438 21 1 7.2273 -10.0912 -2.5947 22 1 5.4820 -9.1030 -3.9574 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.3224 0.6196 2.7800 31 1 3.5359 -3.0436 2.8842 32 1 3.8279 -4.2268 1.0856 33 1 3.3895 -4.7983 -1.6454 34 1 4.9642 -3.9836 -1.4886 35 1 5.6833 -5.6889 0.1610 36 1 4.1088 -6.5043 0.0048 37 1 6.5556 -9.2460 -0.2285 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138790.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:41 Heat of formation + Delta-G solvation = -6.185383 kcal Electronic energy + Delta-G solvation = -19612.848519 eV Core-core repulsion = 16436.626378 eV Total energy + Delta-G solvation = -3176.222141 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.68668 -38.80445 -35.81906 -34.85622 -32.89434 -31.69808 -30.38856 -29.08973 -28.58064 -27.61007 -24.98213 -22.98946 -21.98176 -21.07909 -20.27296 -19.23295 -17.61908 -16.46211 -15.76905 -15.55744 -15.16240 -14.87909 -14.56589 -14.48159 -14.17351 -13.50756 -13.24369 -13.03668 -12.90765 -12.67457 -12.55938 -12.35895 -12.27718 -11.73158 -11.36277 -11.21519 -11.04498 -10.89020 -10.67540 -10.36670 -10.31861 -9.84194 -9.54289 -9.27165 -8.79927 -8.66884 -8.43396 -8.23893 -6.10099 -4.13450 1.41868 1.64728 2.30585 2.61933 3.30590 3.34766 3.37275 3.49709 3.65538 4.38413 4.40758 4.64761 4.68491 4.89094 4.93235 5.06153 5.17302 5.26884 5.30447 5.36787 5.48147 5.61715 5.72360 5.83029 5.88045 6.22002 6.29002 6.41243 6.67694 6.72758 6.81294 6.96710 7.49148 7.59100 7.86668 7.90307 8.24499 8.48912 8.91970 9.51424 11.01400 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014465 B = 0.003007 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.214121 B = 9308.816890 C =11042.495886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.103 3.897 3 C -0.160 4.160 4 N -0.393 5.393 5 C 0.050 3.950 6 C -0.176 4.176 7 Br -0.036 7.036 8 C -0.116 4.116 9 C -0.030 4.030 10 C 0.581 3.419 11 O -0.556 6.556 12 N -0.705 5.705 13 C 0.124 3.876 14 C 0.012 3.988 15 C -0.524 4.524 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.138 0.862 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.172 0.828 31 H 0.154 0.846 32 H 0.401 0.599 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.902 19.943 10.089 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.002 3.998 3 C -0.217 4.217 4 N -0.066 5.066 5 C -0.089 4.089 6 C -0.262 4.262 7 Br 0.048 6.952 8 C -0.143 4.143 9 C -0.144 4.144 10 C 0.367 3.633 11 O -0.438 6.438 12 N -0.354 5.354 13 C 0.002 3.998 14 C -0.025 4.025 15 C -0.562 4.562 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.155 0.845 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.190 0.810 31 H 0.172 0.828 32 H 0.236 0.764 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.046 20.259 9.697 25.030 hybrid contribution 0.415 -0.758 -0.555 1.027 sum -10.632 19.500 9.143 24.018 Atomic orbital electron populations 1.22160 0.93348 1.03304 1.02936 1.22101 0.95454 0.94337 0.87909 1.22152 1.02402 0.94140 1.03033 1.44265 1.39051 1.17136 1.06163 1.21661 1.04151 1.00762 0.82302 1.20873 1.13074 1.01995 0.90263 1.96589 1.98527 1.98643 1.01405 1.21274 1.02996 0.99992 0.90050 1.20296 1.07394 0.91868 0.94850 1.16943 0.78192 0.81519 0.86634 1.90689 1.56819 1.70802 1.25454 1.46060 1.58045 1.18833 1.12424 1.21807 0.97846 0.94197 0.85967 1.19334 0.95999 0.89517 0.97684 1.20989 1.38459 1.03767 0.93017 0.92288 1.24987 0.95788 0.97407 0.96006 1.69940 1.43237 1.18793 1.21178 0.86573 0.79201 0.79025 0.82732 1.20109 1.21220 1.20117 0.91620 0.90375 0.92081 0.84471 0.92040 0.91571 0.90301 0.81049 0.82835 0.76412 0.92197 0.92306 0.95774 0.95783 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.30 37.16 0.35 -1.01 16 2 C 0.10 1.09 3.48 -67.92 -0.24 0.85 16 3 C -0.16 -1.30 9.16 37.16 0.34 -0.96 16 4 N -0.39 -4.80 2.64 -105.77 -0.28 -5.08 16 5 C 0.05 0.54 10.30 -16.87 -0.17 0.37 16 6 C -0.18 -2.11 6.53 -39.94 -0.26 -2.37 16 7 Br -0.04 -0.38 34.08 -68.01 -2.32 -2.70 16 8 C -0.12 -1.53 10.33 -39.10 -0.40 -1.93 16 9 C -0.03 -0.43 6.88 -81.99 -0.56 -0.99 16 10 C 0.58 10.00 7.77 -12.86 -0.10 9.90 16 11 O -0.56 -10.83 14.37 5.19 0.07 -10.76 16 12 N -0.70 -12.33 5.53 -61.62 -0.34 -12.67 16 13 C 0.12 2.57 5.62 -4.04 -0.02 2.55 16 14 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 15 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 19 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.44 8.01 -51.93 -0.42 0.02 16 26 H 0.14 1.84 5.33 -51.93 -0.28 1.56 16 27 H 0.06 0.41 7.71 -51.93 -0.40 0.01 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.17 1.34 7.91 -52.49 -0.42 0.92 16 31 H 0.15 1.83 7.49 -52.48 -0.39 1.44 16 32 H 0.40 6.22 7.42 -40.82 -0.30 5.92 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -30.49 334.86 -8.86 -39.34 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.13 Total: 2.32 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.63 Total: -6.52 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.12 Total: -42.92 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.07 Total: -10.76 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -2.32 Total: -2.70 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.49 -8.86 -39.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138790.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.159 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds