Wall clock time and date at job start Tue Mar 31 2020 15:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46704 * 2 1 4 4 N 1.46506 * 109.46812 * 119.99804 * 2 1 3 5 5 C 1.35592 * 125.67410 * 294.90625 * 4 2 1 6 6 C 1.35507 * 108.85553 * 179.97438 * 5 4 2 7 7 Br 1.89101 * 126.07610 * 180.02562 * 6 5 4 8 8 C 1.39875 * 107.84994 * 359.97438 * 6 5 4 9 9 C 1.37637 * 125.67269 * 114.59900 * 4 2 1 10 10 C 1.46671 * 126.22603 * 0.03798 * 9 4 2 11 11 O 1.21697 * 120.00132 * 5.11744 * 10 9 4 12 12 N 1.34775 * 119.99935 * 185.12450 * 10 9 4 13 13 C 1.46504 * 120.00131 * 185.09386 * 12 10 9 14 14 C 1.52997 * 109.47004 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.46833 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00423 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99752 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00387 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99726 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47467 * 59.99766 * 19 17 15 21 21 H 1.48505 * 109.47287 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47188 * 299.99708 * 19 17 15 23 23 H 1.08995 * 109.46919 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47042 * 60.00194 * 1 2 3 25 25 H 1.08998 * 109.47541 * 300.00017 * 1 2 3 26 26 H 1.08998 * 109.47541 * 239.99983 * 2 1 3 27 27 H 1.09006 * 109.47302 * 60.00002 * 3 2 1 28 28 H 1.09005 * 109.47112 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47627 * 299.99889 * 3 2 1 30 30 H 1.08001 * 125.57752 * 0.02562 * 5 4 2 31 31 H 1.08008 * 126.45252 * 180.02562 * 8 6 5 32 32 H 0.97003 * 119.99828 * 5.09237 * 12 10 9 33 33 H 1.08997 * 109.46923 * 300.00101 * 13 12 10 34 34 H 1.08999 * 109.47010 * 59.99528 * 13 12 10 35 35 H 1.08999 * 109.47193 * 299.99454 * 14 13 12 36 36 H 1.08999 * 109.47501 * 59.99977 * 14 13 12 37 37 H 0.96998 * 120.00291 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.8445 -0.2754 2.4753 6 6 2.4320 -1.1676 3.3090 7 35 2.4809 -1.0630 5.1965 8 6 2.9949 -2.1804 2.5254 9 6 2.7246 -1.8719 1.2090 10 6 3.1206 -2.6577 0.0356 11 8 2.9053 -2.2309 -1.0835 12 7 3.7228 -3.8527 0.1968 13 6 4.2186 -4.5864 -0.9703 14 6 4.8541 -5.9012 -0.5138 15 6 5.3636 -6.6563 -1.7144 16 1 5.2462 -6.2399 -2.7040 17 6 5.9795 -7.8788 -1.5495 18 7 6.1220 -8.3861 -0.3446 19 14 6.6116 -8.8144 -3.0376 20 1 7.6275 -7.9932 -3.7438 21 1 7.2273 -10.0912 -2.5947 22 1 5.4820 -9.1030 -3.9574 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.6766 1.9564 0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.3224 0.6196 2.7800 31 1 3.5359 -3.0436 2.8842 32 1 3.8279 -4.2268 1.0856 33 1 3.3895 -4.7983 -1.6454 34 1 4.9642 -3.9836 -1.4886 35 1 5.6833 -5.6889 0.1610 36 1 4.1088 -6.5043 0.0048 37 1 6.5556 -9.2460 -0.2285 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054138790.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:40 Heat of formation + Delta-G solvation = -23.886333 kcal Electronic energy + Delta-G solvation = -19613.616090 eV Core-core repulsion = 16436.626378 eV Total energy + Delta-G solvation = -3176.989712 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.67771 -40.19818 -36.86678 -36.32268 -34.82588 -32.62474 -31.95527 -30.24895 -29.67685 -28.25230 -26.81720 -24.23850 -23.11355 -22.66215 -21.39418 -20.40476 -18.74722 -18.40255 -17.03109 -16.77332 -16.61556 -16.34399 -15.88424 -15.70222 -15.00128 -14.92889 -14.70652 -14.29802 -13.94471 -13.82756 -13.62585 -13.23395 -13.16370 -13.06494 -12.92834 -12.54796 -12.47623 -12.25411 -12.18827 -11.74613 -11.64924 -11.47308 -11.20188 -10.86608 -10.59976 -10.15980 -9.72838 -9.27044 -8.23241 -6.34072 0.32554 0.75000 1.36013 1.42487 1.44841 1.52525 1.61895 2.22322 2.32986 2.47819 3.11630 3.60542 3.67409 3.88614 3.92682 4.13722 4.18751 4.44755 4.45360 4.47411 4.61049 4.64143 4.75469 4.82678 4.83743 4.91032 5.09045 5.17863 5.24352 5.37973 5.48335 5.57257 5.73484 5.78464 6.07922 6.15155 6.50967 6.78822 7.10605 7.35253 8.88461 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014465 B = 0.003007 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.214121 B = 9308.816890 C =11042.495886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.096 3.904 3 C -0.153 4.153 4 N -0.393 5.393 5 C 0.074 3.926 6 C -0.194 4.194 7 Br -0.022 7.022 8 C -0.111 4.111 9 C -0.063 4.063 10 C 0.581 3.419 11 O -0.584 6.584 12 N -0.704 5.704 13 C 0.145 3.855 14 C 0.022 3.978 15 C -0.548 4.548 16 H 0.061 0.939 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.965 3.035 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.268 1.268 23 H 0.044 0.956 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.096 0.904 30 H 0.209 0.791 31 H 0.159 0.841 32 H 0.410 0.590 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.010 0.990 36 H 0.008 0.992 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.725 21.540 10.495 26.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.004 4.004 3 C -0.210 4.210 4 N -0.066 5.066 5 C -0.066 4.066 6 C -0.279 4.279 7 Br 0.062 6.938 8 C -0.138 4.138 9 C -0.176 4.176 10 C 0.370 3.630 11 O -0.467 6.467 12 N -0.354 5.354 13 C 0.021 3.979 14 C -0.015 4.015 15 C -0.586 4.586 16 H 0.079 0.921 17 C -0.191 4.191 18 N -0.566 5.566 19 Si 0.789 3.211 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.193 1.193 23 H 0.063 0.937 24 H 0.114 0.886 25 H 0.100 0.900 26 H 0.122 0.878 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.115 0.885 30 H 0.226 0.774 31 H 0.176 0.824 32 H 0.247 0.753 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.027 0.973 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.876 21.866 10.111 26.858 hybrid contribution 0.630 -1.185 -0.596 1.469 sum -11.246 20.680 9.515 25.391 Atomic orbital electron populations 1.22136 0.91520 1.02557 1.04874 1.22196 0.96851 0.95162 0.86192 1.22133 1.01322 0.92555 1.05022 1.44469 1.38448 1.16408 1.07258 1.22242 1.02225 1.00930 0.81206 1.21026 1.13622 1.02078 0.91202 1.96603 1.98536 1.98596 1.00069 1.21450 1.02243 1.00335 0.89805 1.19876 1.10314 0.93452 0.93990 1.17271 0.77282 0.81123 0.87289 1.90678 1.57860 1.71345 1.26838 1.45837 1.58502 1.19185 1.11866 1.21293 0.97072 0.92744 0.86747 1.19140 0.95089 0.90779 0.96537 1.21427 1.38744 1.04507 0.93943 0.92114 1.25866 0.95895 0.98357 0.98973 1.70052 1.43974 1.19287 1.23242 0.85505 0.78814 0.77657 0.79113 1.19281 1.20665 1.19321 0.93669 0.88600 0.89973 0.87776 0.89819 0.93211 0.88546 0.77448 0.82372 0.75340 0.93064 0.92999 0.97213 0.97324 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.30 71.98 0.67 -1.63 16 2 C 0.10 1.93 3.48 44.99 0.16 2.09 16 3 C -0.15 -2.14 9.16 71.98 0.66 -1.48 16 4 N -0.39 -9.11 2.64 -488.56 -1.29 -10.40 16 5 C 0.07 1.39 10.30 83.48 0.86 2.25 16 6 C -0.19 -4.26 6.53 22.03 0.14 -4.12 16 7 Br -0.02 -0.42 34.08 -20.37 -0.69 -1.12 16 8 C -0.11 -2.84 10.33 22.58 0.23 -2.60 16 9 C -0.06 -1.81 6.88 40.35 0.28 -1.53 16 10 C 0.58 20.59 7.77 86.45 0.67 21.26 16 11 O -0.58 -23.56 14.37 -4.34 -0.06 -23.62 16 12 N -0.70 -25.44 5.53 -467.09 -2.58 -28.02 16 13 C 0.14 6.21 5.62 86.38 0.49 6.70 16 14 C 0.02 1.11 5.09 29.85 0.15 1.26 16 15 C -0.55 -30.49 9.11 25.60 0.23 -30.26 16 16 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 17 C 0.01 0.45 5.46 84.66 0.46 0.91 16 18 N -0.93 -54.40 13.29 21.45 0.28 -54.11 16 19 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.08 0.89 8.01 -2.39 -0.02 0.87 16 26 H 0.10 2.85 5.33 -2.39 -0.01 2.84 16 27 H 0.08 0.80 7.71 -2.38 -0.02 0.78 16 28 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.21 2.29 7.91 -2.91 -0.02 2.26 16 31 H 0.16 3.74 7.49 -2.91 -0.02 3.71 16 32 H 0.41 13.15 7.42 -92.71 -0.69 12.46 16 33 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 36 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -66.26 334.86 3.08 -63.19 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.39 Total: 15.74 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 5.00 Total: -7.14 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -3.59 Total: -92.53 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.06 Total: -23.62 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -0.69 Total: -1.12 kcal Total: -66.26 3.08 -63.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138790.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.300 kcal (2) G-P(sol) polarization free energy of solvation -66.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds