Wall clock time and date at job start Tue Mar 31 2020 15:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47266 * 2 1 4 4 C 1.35602 * 125.68127 * 266.22949 * 3 2 1 5 5 C 1.35498 * 108.85837 * 179.97438 * 4 3 2 6 6 Br 1.89106 * 126.07288 * 179.97438 * 5 4 3 7 7 C 1.39878 * 107.85623 * 359.73942 * 5 4 3 8 8 C 1.37643 * 125.67295 * 86.22435 * 3 2 1 9 9 C 1.46676 * 126.22707 * 0.02562 * 8 3 2 10 10 O 1.21691 * 119.99629 * 353.77081 * 9 8 3 11 11 N 1.34774 * 119.99879 * 173.77303 * 9 8 3 12 12 C 1.46491 * 120.00483 * 7.54632 * 11 9 8 13 13 C 1.46504 * 119.99665 * 187.55073 * 11 9 8 14 14 H 1.09005 * 109.47217 * 359.97438 * 13 11 9 15 15 C 1.52993 * 109.46955 * 239.99786 * 13 11 9 16 16 C 1.50700 * 109.46906 * 119.99878 * 13 11 9 17 17 H 1.07999 * 120.00082 * 359.97438 * 16 13 11 18 18 C 1.37882 * 119.99800 * 180.02562 * 16 13 11 19 19 N 1.31515 * 119.99806 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99955 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47157 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47308 * 119.99775 * 20 18 16 23 23 H 1.48506 * 109.46846 * 239.99663 * 20 18 16 24 24 H 1.08997 * 109.47422 * 305.38094 * 1 2 3 25 25 H 1.09008 * 109.46838 * 65.38199 * 1 2 3 26 26 H 1.09003 * 109.47144 * 185.37478 * 1 2 3 27 27 H 1.09001 * 109.47006 * 240.00562 * 2 1 3 28 28 H 1.08994 * 109.47161 * 120.00472 * 2 1 3 29 29 H 1.08001 * 125.56562 * 0.02562 * 4 3 2 30 30 H 1.07994 * 126.45623 * 180.26320 * 7 5 4 31 31 H 1.09002 * 109.46999 * 66.65809 * 12 11 9 32 32 H 1.08998 * 109.47292 * 306.66577 * 12 11 9 33 33 H 1.08996 * 109.47605 * 186.65961 * 12 11 9 34 34 H 1.09002 * 109.47353 * 60.00092 * 15 13 11 35 35 H 1.09003 * 109.46791 * 179.97438 * 15 13 11 36 36 H 1.08993 * 109.47609 * 299.99976 * 15 13 11 37 37 H 0.97006 * 119.99636 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3503 2.1027 -1.0991 5 6 2.7578 3.3343 -0.7078 6 35 3.3317 4.7311 -1.8461 7 6 2.6734 3.3909 0.6873 8 6 2.2165 2.1625 1.1157 9 6 1.9785 1.7633 2.5069 10 8 1.4607 0.6896 2.7517 11 7 2.3333 2.5856 3.5140 12 6 2.8024 3.9422 3.2214 13 6 2.2499 2.1228 4.9015 14 1 1.8826 1.0967 4.9208 15 6 1.2898 3.0224 5.6823 16 6 3.6171 2.1795 5.5330 17 1 4.4635 2.5253 4.9581 18 6 3.7875 1.7889 6.8443 19 7 2.7568 1.3674 7.5441 20 14 5.4820 1.8599 7.6273 21 1 6.4645 2.3667 6.6359 22 1 5.4475 2.7697 8.8004 23 1 5.8810 0.4990 8.0678 24 1 -0.3634 0.5950 0.8378 25 1 -0.3633 0.4281 -0.9343 26 1 -0.3633 -1.0232 0.0963 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.2976 1.7531 -2.1196 30 1 2.9223 4.2363 1.3114 31 1 1.9835 4.5275 2.8032 32 1 3.6204 3.8966 2.5025 33 1 3.1523 4.4119 4.1406 34 1 0.3009 2.9814 5.2256 35 1 1.2274 2.6777 6.7145 36 1 1.6566 4.0485 5.6631 37 1 2.8767 1.0930 8.4667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095459.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:58 Heat of formation + Delta-G solvation = 32.167220 kcal Electronic energy + Delta-G solvation = -20633.188612 eV Core-core repulsion = 17458.629565 eV Total energy + Delta-G solvation = -3174.559048 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.42439 -38.58433 -35.61301 -34.21766 -32.91782 -31.22935 -30.27530 -28.63098 -28.08017 -26.49813 -25.24050 -23.46204 -22.64187 -20.59968 -19.86624 -18.60914 -16.84649 -16.41959 -15.80435 -15.33775 -15.18175 -14.44070 -14.22946 -14.09237 -13.79762 -13.15021 -12.98760 -12.66838 -12.44061 -12.35797 -12.28820 -12.01140 -11.62208 -11.20227 -11.09901 -10.91612 -10.80543 -10.73919 -10.61710 -10.25727 -10.21811 -10.16240 -9.24676 -9.11383 -8.55619 -8.46737 -8.14923 -7.63230 -6.10913 -4.19089 1.70494 1.80385 2.52547 2.87587 3.24493 3.32776 3.36220 3.83300 3.98746 4.37663 4.71047 4.86171 5.04628 5.05703 5.20778 5.28247 5.32238 5.60719 5.70605 5.78140 5.86128 5.94382 6.02229 6.15102 6.34275 6.58459 6.74278 6.81533 6.91372 7.03504 7.16554 7.39020 7.48037 7.68118 7.97977 8.14213 8.44522 8.77120 8.95731 9.47684 10.94370 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015805 B = 0.003916 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.162596 B = 7149.315010 C = 8244.074178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.402 5.402 4 C 0.041 3.959 5 C -0.178 4.178 6 Br -0.042 7.042 7 C -0.146 4.146 8 C -0.017 4.017 9 C 0.573 3.427 10 O -0.557 6.557 11 N -0.574 5.574 12 C 0.069 3.931 13 C 0.260 3.740 14 H 0.064 0.936 15 C -0.147 4.147 16 C -0.527 4.527 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.899 3.101 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.171 0.829 30 H 0.176 0.824 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.012 0.988 35 H 0.094 0.906 36 H 0.031 0.969 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.318 4.474 -18.937 19.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.075 5.075 4 C -0.098 4.098 5 C -0.264 4.264 6 Br 0.042 6.958 7 C -0.172 4.172 8 C -0.131 4.131 9 C 0.360 3.640 10 O -0.439 6.439 11 N -0.303 5.303 12 C -0.075 4.075 13 C 0.161 3.839 14 H 0.082 0.918 15 C -0.205 4.205 16 C -0.566 4.566 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.525 5.525 20 Si 0.726 3.274 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.128 0.872 29 H 0.189 0.811 30 H 0.193 0.807 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.031 0.969 35 H 0.113 0.887 36 H 0.050 0.950 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.561 3.978 -18.942 19.418 hybrid contribution 0.849 -0.188 0.586 1.049 sum -0.712 3.790 -18.355 18.756 Atomic orbital electron populations 1.22051 0.93833 1.03320 1.02627 1.22079 0.96188 0.79047 1.04982 1.44143 1.46535 1.11936 1.04840 1.21712 1.04691 0.91373 0.92018 1.20939 1.16459 0.94532 0.94498 1.96543 1.89565 1.46147 1.63535 1.22390 1.03754 0.98002 0.93007 1.20545 1.11765 0.92095 0.88741 1.16906 0.79553 0.84633 0.82876 1.90736 1.45142 1.23367 1.84626 1.47956 1.61642 1.12715 1.08034 1.22236 0.98370 0.84214 1.02638 1.19027 0.95712 0.95845 0.73333 0.91802 1.22097 0.95782 0.98745 1.03886 1.21371 0.93509 1.44801 0.96889 0.92045 1.24889 0.97100 0.94767 0.96957 1.69894 1.29503 1.43421 1.09682 0.86429 0.83951 0.77775 0.79197 1.19733 1.20874 1.20934 0.91040 0.92690 0.90675 0.89525 0.87172 0.81141 0.80716 0.93115 0.91520 0.89590 0.96886 0.88737 0.95009 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 10.17 37.16 0.38 -1.51 16 2 C 0.10 1.22 6.11 -4.05 -0.02 1.20 16 3 N -0.40 -5.84 2.76 -112.84 -0.31 -6.15 16 4 C 0.04 0.51 11.34 -16.86 -0.19 0.32 16 5 C -0.18 -2.43 6.53 -39.95 -0.26 -2.69 16 6 Br -0.04 -0.48 34.08 -68.01 -2.32 -2.80 16 7 C -0.15 -2.22 8.83 -39.10 -0.35 -2.56 16 8 C -0.02 -0.29 6.83 -81.98 -0.56 -0.85 16 9 C 0.57 12.04 7.62 -12.86 -0.10 11.94 16 10 O -0.56 -13.06 13.83 5.20 0.07 -12.99 16 11 N -0.57 -12.27 2.75 -176.82 -0.49 -12.76 16 12 C 0.07 1.17 7.60 59.84 0.45 1.63 16 13 C 0.26 6.55 2.57 -69.08 -0.18 6.37 16 14 H 0.06 1.85 6.92 -51.93 -0.36 1.49 16 15 C -0.15 -3.47 8.96 37.15 0.33 -3.13 16 16 C -0.53 -13.98 8.04 -34.44 -0.28 -14.26 16 17 H 0.06 1.62 7.65 -52.49 -0.40 1.21 16 18 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 20 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H 0.07 1.06 7.83 -51.93 -0.41 0.65 16 25 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.09 0.79 8.13 -51.93 -0.42 0.37 16 28 H 0.11 1.66 6.69 -51.93 -0.35 1.31 16 29 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.18 2.45 4.11 -52.49 -0.22 2.24 16 31 H 0.05 0.75 7.33 -51.93 -0.38 0.37 16 32 H 0.07 1.03 5.50 -51.93 -0.29 0.75 16 33 H 0.09 1.51 6.83 -51.93 -0.35 1.16 16 34 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 36 H 0.03 0.69 7.21 -51.93 -0.37 0.31 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 320.56 15.07 4.83 4.83 Total: -1.00 -29.88 320.56 -8.16 -38.04 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.69 Total: 2.01 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -0.86 Total: -1.89 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.17 Total: -42.96 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.07 Total: -12.99 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.32 Total: -2.80 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.88 -8.16 -38.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095459.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.207 kcal (2) G-P(sol) polarization free energy of solvation -29.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds