Wall clock time and date at job start Tue Mar 31 2020 15:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47266 * 2 1 4 4 C 1.35602 * 125.68127 * 266.22949 * 3 2 1 5 5 C 1.35498 * 108.85837 * 179.97438 * 4 3 2 6 6 Br 1.89106 * 126.07288 * 179.97438 * 5 4 3 7 7 C 1.39878 * 107.85623 * 359.73942 * 5 4 3 8 8 C 1.37643 * 125.67295 * 86.22435 * 3 2 1 9 9 C 1.46676 * 126.22707 * 0.02562 * 8 3 2 10 10 O 1.21691 * 119.99629 * 353.77081 * 9 8 3 11 11 N 1.34774 * 119.99879 * 173.77303 * 9 8 3 12 12 C 1.46491 * 120.00483 * 7.54632 * 11 9 8 13 13 C 1.46504 * 119.99665 * 187.55073 * 11 9 8 14 14 H 1.09005 * 109.47217 * 359.97438 * 13 11 9 15 15 C 1.52993 * 109.46955 * 239.99786 * 13 11 9 16 16 C 1.50700 * 109.46906 * 119.99878 * 13 11 9 17 17 H 1.07999 * 120.00082 * 359.97438 * 16 13 11 18 18 C 1.37882 * 119.99800 * 180.02562 * 16 13 11 19 19 N 1.31515 * 119.99806 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99955 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47157 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47308 * 119.99775 * 20 18 16 23 23 H 1.48506 * 109.46846 * 239.99663 * 20 18 16 24 24 H 1.08997 * 109.47422 * 305.38094 * 1 2 3 25 25 H 1.09008 * 109.46838 * 65.38199 * 1 2 3 26 26 H 1.09003 * 109.47144 * 185.37478 * 1 2 3 27 27 H 1.09001 * 109.47006 * 240.00562 * 2 1 3 28 28 H 1.08994 * 109.47161 * 120.00472 * 2 1 3 29 29 H 1.08001 * 125.56562 * 0.02562 * 4 3 2 30 30 H 1.07994 * 126.45623 * 180.26320 * 7 5 4 31 31 H 1.09002 * 109.46999 * 66.65809 * 12 11 9 32 32 H 1.08998 * 109.47292 * 306.66577 * 12 11 9 33 33 H 1.08996 * 109.47605 * 186.65961 * 12 11 9 34 34 H 1.09002 * 109.47353 * 60.00092 * 15 13 11 35 35 H 1.09003 * 109.46791 * 179.97438 * 15 13 11 36 36 H 1.08993 * 109.47609 * 299.99976 * 15 13 11 37 37 H 0.97006 * 119.99636 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3503 2.1027 -1.0991 5 6 2.7578 3.3343 -0.7078 6 35 3.3317 4.7311 -1.8461 7 6 2.6734 3.3909 0.6873 8 6 2.2165 2.1625 1.1157 9 6 1.9785 1.7633 2.5069 10 8 1.4607 0.6896 2.7517 11 7 2.3333 2.5856 3.5140 12 6 2.8024 3.9422 3.2214 13 6 2.2499 2.1228 4.9015 14 1 1.8826 1.0967 4.9208 15 6 1.2898 3.0224 5.6823 16 6 3.6171 2.1795 5.5330 17 1 4.4635 2.5253 4.9581 18 6 3.7875 1.7889 6.8443 19 7 2.7568 1.3674 7.5441 20 14 5.4820 1.8599 7.6273 21 1 6.4645 2.3667 6.6359 22 1 5.4475 2.7697 8.8004 23 1 5.8810 0.4990 8.0678 24 1 -0.3634 0.5950 0.8378 25 1 -0.3633 0.4281 -0.9343 26 1 -0.3633 -1.0232 0.0963 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.2976 1.7531 -2.1196 30 1 2.9223 4.2363 1.3114 31 1 1.9835 4.5275 2.8032 32 1 3.6204 3.8966 2.5025 33 1 3.1523 4.4119 4.1406 34 1 0.3009 2.9814 5.2256 35 1 1.2274 2.6777 6.7145 36 1 1.6566 4.0485 5.6631 37 1 2.8767 1.0930 8.4667 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095459.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:58 Heat of formation + Delta-G solvation = 15.419464 kcal Electronic energy + Delta-G solvation = -20633.914849 eV Core-core repulsion = 17458.629565 eV Total energy + Delta-G solvation = -3175.285285 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.59310 -40.17477 -37.28734 -35.49263 -34.65735 -32.37271 -31.82652 -29.92458 -29.29552 -27.95355 -27.30068 -24.60219 -24.09047 -21.92460 -21.34220 -19.94662 -18.48624 -18.02160 -17.44093 -16.83817 -16.63152 -15.99868 -15.58882 -15.35977 -14.86522 -14.74064 -14.43044 -14.10807 -13.86575 -13.58736 -13.55134 -13.40501 -13.00492 -12.97004 -12.76740 -12.68749 -12.23442 -12.16984 -12.09470 -11.99023 -11.75474 -11.22370 -11.15548 -10.74087 -10.51477 -9.67601 -9.46984 -9.14240 -8.15519 -6.31985 0.45977 0.79223 1.41487 1.42859 1.44460 1.54621 1.72255 2.31458 2.42261 2.55994 3.12794 3.62055 3.79602 3.96636 4.09267 4.22516 4.35878 4.40237 4.54945 4.62931 4.70496 4.74602 4.81175 4.88991 4.91152 5.01471 5.07277 5.17238 5.42113 5.46590 5.61875 5.65381 5.77245 6.01913 6.14123 6.14550 6.73860 6.75932 7.25325 7.42798 8.89158 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015805 B = 0.003916 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.162596 B = 7149.315010 C = 8244.074178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 N -0.405 5.405 4 C 0.068 3.932 5 C -0.196 4.196 6 Br -0.020 7.020 7 C -0.133 4.133 8 C -0.057 4.057 9 C 0.564 3.436 10 O -0.597 6.597 11 N -0.585 5.585 12 C 0.069 3.931 13 C 0.267 3.733 14 H 0.012 0.988 15 C -0.132 4.132 16 C -0.538 4.538 17 H 0.061 0.939 18 C 0.018 3.982 19 N -0.916 5.916 20 Si 0.965 3.035 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.285 1.285 24 H 0.030 0.970 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.131 0.869 28 H 0.075 0.925 29 H 0.213 0.787 30 H 0.184 0.816 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.018 0.982 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 5.650 -21.537 22.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.026 4.026 3 N -0.077 5.077 4 C -0.072 4.072 5 C -0.281 4.281 6 Br 0.064 6.936 7 C -0.160 4.160 8 C -0.171 4.171 9 C 0.354 3.646 10 O -0.481 6.481 11 N -0.314 5.314 12 C -0.073 4.073 13 C 0.165 3.835 14 H 0.030 0.970 15 C -0.191 4.191 16 C -0.576 4.576 17 H 0.079 0.921 18 C -0.182 4.182 19 N -0.555 5.555 20 Si 0.790 3.210 21 H -0.190 1.190 22 H -0.199 1.199 23 H -0.211 1.211 24 H 0.050 0.950 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.149 0.851 28 H 0.094 0.906 29 H 0.230 0.770 30 H 0.200 0.800 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.037 0.963 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.427 5.185 -21.556 22.175 hybrid contribution 0.472 -0.548 1.265 1.458 sum 0.045 4.637 -20.290 20.813 Atomic orbital electron populations 1.21991 0.93364 1.03683 1.02029 1.22206 0.96582 0.78364 1.05409 1.44334 1.46352 1.12465 1.04590 1.22413 1.01348 0.90508 0.92897 1.21107 1.17103 0.95803 0.94115 1.96571 1.89377 1.45213 1.62421 1.22521 1.02030 0.97201 0.94199 1.20014 1.15628 0.93854 0.87555 1.17452 0.78658 0.83964 0.84500 1.90700 1.46867 1.25012 1.85551 1.47894 1.62302 1.14451 1.06786 1.22444 0.99814 0.82115 1.02917 1.18603 0.95370 0.93650 0.75854 0.96959 1.21890 0.95872 0.99173 1.02150 1.21588 0.93999 1.44836 0.97222 0.92078 1.25708 1.00700 0.94327 0.97492 1.70030 1.31487 1.44025 1.09967 0.85402 0.79532 0.77615 0.78439 1.18973 1.19925 1.21132 0.95030 0.90325 0.89245 0.85131 0.90612 0.77036 0.79955 0.90636 0.89747 0.90235 0.96340 0.91158 0.93293 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 10.17 71.98 0.73 -2.74 16 2 C 0.09 2.27 6.11 86.38 0.53 2.79 16 3 N -0.40 -11.12 2.76 -510.93 -1.41 -12.53 16 4 C 0.07 1.46 11.34 83.48 0.95 2.41 16 5 C -0.20 -4.73 6.53 22.03 0.14 -4.58 16 6 Br -0.02 -0.39 34.08 -20.37 -0.69 -1.09 16 7 C -0.13 -3.81 8.83 22.58 0.20 -3.61 16 8 C -0.06 -1.95 6.83 40.35 0.28 -1.67 16 9 C 0.56 24.65 7.62 86.45 0.66 25.31 16 10 O -0.60 -29.91 13.83 -4.32 -0.06 -29.97 16 11 N -0.59 -25.73 2.75 -831.55 -2.29 -28.02 16 12 C 0.07 2.30 7.60 127.77 0.97 3.27 16 13 C 0.27 14.00 2.57 44.24 0.11 14.11 16 14 H 0.01 0.77 6.92 -2.38 -0.02 0.76 16 15 C -0.13 -6.46 8.96 71.98 0.65 -5.81 16 16 C -0.54 -29.21 8.04 25.60 0.21 -29.00 16 17 H 0.06 3.24 7.65 -2.91 -0.02 3.22 16 18 C 0.02 0.95 5.30 84.66 0.45 1.40 16 19 N -0.92 -52.48 11.32 21.45 0.24 -52.24 16 20 Si 0.97 42.88 29.54 68.60 2.03 44.91 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 24 H 0.03 0.96 7.83 -2.39 -0.02 0.94 16 25 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.13 1.94 8.13 -2.39 -0.02 1.92 16 28 H 0.08 2.37 6.69 -2.39 -0.02 2.36 16 29 H 0.21 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.18 4.74 4.11 -2.91 -0.01 4.72 16 31 H 0.08 2.13 7.33 -2.39 -0.02 2.11 16 32 H 0.08 2.51 5.50 -2.39 -0.01 2.49 16 33 H 0.08 2.74 6.83 -2.39 -0.02 2.73 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.81 16 35 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 36 H 0.05 2.16 7.21 -2.39 -0.02 2.14 16 37 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -68.23 320.56 4.77 -63.46 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 1.09 Total: 13.59 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 5.87 Total: 1.88 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -3.46 Total: -92.79 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.06 Total: -29.97 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 35 Polarization: -0.39 SS G_CDS: -0.69 Total: -1.09 kcal Total: -68.23 4.77 -63.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095459.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.883 kcal (2) G-P(sol) polarization free energy of solvation -68.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds