Wall clock time and date at job start Tue Mar 31 2020 14:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 120.00158 * 2 1 4 4 H 1.48506 * 109.46803 * 239.99448 * 3 2 1 5 5 H 1.48497 * 109.47032 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47429 * 119.99690 * 3 2 1 7 7 C 1.38811 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99742 * 172.79864 * 7 2 1 9 9 N 1.36937 * 119.99976 * 352.81371 * 7 2 1 10 10 C 1.46489 * 120.00398 * 22.25491 * 9 7 2 11 11 C 1.50706 * 109.47230 * 270.00256 * 10 9 7 12 12 O 1.21286 * 120.00038 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99978 * 179.72062 * 11 10 9 14 14 C 1.39973 * 119.99903 * 174.53272 * 13 11 10 15 15 C 1.38835 * 120.06873 * 340.49021 * 14 13 11 16 16 C 1.38225 * 119.92921 * 179.81431 * 15 14 13 17 17 Cl 1.73603 * 119.96762 * 180.22857 * 16 15 14 18 18 C 1.38411 * 120.06732 * 0.43738 * 16 15 14 19 19 C 1.38247 * 120.13420 * 359.79005 * 18 16 15 20 20 C 1.38232 * 120.06909 * 359.97438 * 19 18 16 21 21 Cl 1.73604 * 120.03102 * 179.97438 * 20 19 18 22 22 C 1.46504 * 119.99473 * 202.26189 * 9 7 2 23 23 C 1.52995 * 117.50410 * 14.19568 * 22 9 7 24 24 C 1.53001 * 117.49933 * 305.53329 * 22 9 7 25 25 H 0.96997 * 119.99356 * 5.03164 * 1 2 3 26 26 H 1.09004 * 109.47558 * 150.00620 * 10 9 7 27 27 H 1.08998 * 109.47183 * 30.00370 * 10 9 7 28 28 H 0.97000 * 120.00026 * 354.53975 * 13 11 10 29 29 H 1.08002 * 120.03510 * 359.97438 * 15 14 13 30 30 H 1.07996 * 119.93423 * 179.76754 * 18 16 15 31 31 H 1.08003 * 119.96495 * 179.97438 * 19 18 16 32 32 H 1.09001 * 115.54787 * 159.87251 * 22 9 7 33 33 H 1.09004 * 117.49389 * 0.02562 * 23 22 9 34 34 H 1.08994 * 117.49962 * 145.02030 * 23 22 9 35 35 H 1.08993 * 117.50695 * 214.98019 * 24 22 9 36 36 H 1.09007 * 117.49839 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0839 -1.2059 -0.1167 9 7 1.3336 -2.3833 0.1494 10 6 -0.0932 -2.4560 -0.1744 11 6 -0.9043 -2.1279 1.0527 12 8 -0.3454 -1.8593 2.0950 13 7 -2.2506 -2.1269 0.9902 14 6 -3.0051 -1.9354 2.1536 15 6 -2.4293 -2.1478 3.3989 16 6 -3.1758 -1.9541 4.5460 17 17 -2.4551 -2.2138 6.1038 18 6 -4.4987 -1.5574 4.4537 19 6 -5.0761 -1.3496 3.2149 20 6 -4.3333 -1.5370 2.0643 21 17 -5.0596 -1.2764 0.5091 22 6 2.0366 -3.5743 0.6328 23 6 3.4154 -3.3731 1.2647 24 6 3.2943 -4.0076 -0.1231 25 1 -0.4849 0.8368 -0.0737 26 1 -0.3382 -3.4627 -0.5133 27 1 -0.3235 -1.7408 -0.9641 28 1 -2.6968 -2.2591 0.1391 29 1 -1.3984 -2.4617 3.4714 30 1 -5.0810 -1.4103 5.3512 31 1 -6.1087 -1.0405 3.1460 32 1 1.4029 -4.3587 1.0466 33 1 3.7992 -2.3544 1.3212 34 1 3.6889 -4.0252 2.0940 35 1 3.4884 -5.0769 -0.2061 36 1 3.5985 -3.4068 -0.9803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063516366.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:32 Heat of formation + Delta-G solvation = 43.351105 kcal Electronic energy + Delta-G solvation = -23515.429738 eV Core-core repulsion = 19860.659416 eV Total energy + Delta-G solvation = -3654.770322 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.00225 -38.16515 -36.87132 -36.60607 -35.98456 -34.02289 -33.45800 -30.70299 -30.35831 -29.42000 -26.65256 -24.01196 -22.96518 -22.14801 -21.46327 -20.15350 -19.63477 -17.84769 -16.65699 -16.32254 -16.11061 -15.79488 -14.96028 -14.75524 -14.42371 -14.16891 -13.83646 -13.55926 -13.23700 -13.01036 -12.45585 -12.30400 -12.26061 -11.95235 -11.82494 -11.08291 -10.98360 -10.93109 -10.88154 -10.81930 -10.72426 -10.58687 -10.50833 -10.14520 -9.93673 -9.83601 -9.41344 -8.79038 -8.59355 -8.39622 -7.64802 -6.85901 -5.95269 -3.36412 1.12775 1.42245 2.13086 2.33508 3.32293 3.39463 3.41101 3.54046 3.66340 4.11702 4.39417 4.82766 4.85444 5.07774 5.16069 5.34802 5.39011 5.42876 5.72900 5.79726 5.97706 6.03030 6.08463 6.14312 6.28075 6.38877 6.40186 6.49013 6.56233 6.64090 6.85689 7.04475 7.14601 7.26649 7.64278 8.08389 8.25162 9.02205 9.31633 9.65689 10.09144 11.10984 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011189 B = 0.004592 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.747861 B = 6095.955016 C = 6825.622936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.010 3.990 3 Si 0.917 3.083 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.245 4.245 8 H 0.079 0.921 9 N -0.540 5.540 10 C 0.168 3.832 11 C 0.529 3.471 12 O -0.507 6.507 13 N -0.676 5.676 14 C 0.212 3.788 15 C -0.133 4.133 16 C -0.005 4.005 17 Cl -0.070 7.070 18 C -0.147 4.147 19 C -0.075 4.075 20 C -0.090 4.090 21 Cl -0.067 7.067 22 C 0.130 3.870 23 C -0.198 4.198 24 C -0.223 4.223 25 H 0.258 0.742 26 H 0.038 0.962 27 H 0.126 0.874 28 H 0.406 0.594 29 H 0.175 0.825 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.977 -6.113 3.209 12.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.747 3.253 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.373 4.373 8 H 0.096 0.904 9 N -0.255 5.255 10 C 0.038 3.962 11 C 0.318 3.682 12 O -0.379 6.379 13 N -0.319 5.319 14 C 0.111 3.889 15 C -0.154 4.154 16 C -0.032 4.032 17 Cl -0.041 7.041 18 C -0.167 4.167 19 C -0.095 4.095 20 C -0.120 4.120 21 Cl -0.039 7.039 22 C 0.020 3.980 23 C -0.237 4.237 24 C -0.264 4.264 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.143 0.857 28 H 0.242 0.758 29 H 0.192 0.808 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.519 -5.756 3.895 11.786 hybrid contribution 0.124 1.175 -0.246 1.206 sum -9.394 -4.581 3.649 11.070 Atomic orbital electron populations 1.69510 1.05338 1.26123 1.55030 1.24929 0.95608 0.98221 0.99935 0.86128 0.78666 0.82537 0.77963 1.21069 1.21600 1.20936 1.19179 0.92231 0.82836 1.43076 0.90362 1.43258 1.03863 1.06328 1.72078 1.20778 0.82968 0.98431 0.94041 1.22629 0.79307 0.73808 0.92408 1.90433 1.69821 1.45510 1.32132 1.44318 1.08000 1.71666 1.07924 1.17586 0.88785 0.94108 0.88437 1.21651 1.03088 1.02282 0.88369 1.20818 0.93363 1.02334 0.86698 1.98357 1.83788 1.95015 1.26982 1.20760 0.93532 1.04653 0.97769 1.20655 0.99779 0.99212 0.89807 1.20667 0.93701 1.10282 0.87347 1.98344 1.82615 1.95333 1.27577 1.20979 0.86947 0.91453 0.98641 1.23108 1.03999 1.01764 0.94853 1.23421 1.08349 0.98883 0.95764 0.93062 0.94400 0.85670 0.75845 0.80793 0.84768 0.84419 0.89125 0.88490 0.90579 0.90618 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.98 8.19 55.49 0.45 -23.53 16 2 C 0.01 0.26 5.40 -17.43 -0.09 0.16 16 3 Si 0.92 21.68 29.56 -169.99 -5.03 16.65 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.29 8.71 -15.06 -0.13 -6.42 16 8 H 0.08 2.00 6.53 -52.49 -0.34 1.66 16 9 N -0.54 -12.62 2.38 -167.03 -0.40 -13.02 16 10 C 0.17 3.59 5.47 -5.20 -0.03 3.57 16 11 C 0.53 11.48 5.62 -10.98 -0.06 11.42 16 12 O -0.51 -12.79 13.09 5.55 0.07 -12.71 16 13 N -0.68 -12.28 5.26 -9.84 -0.05 -12.34 16 14 C 0.21 3.72 6.50 -83.65 -0.54 3.18 16 15 C -0.13 -2.41 8.57 -39.37 -0.34 -2.75 16 16 C 0.00 -0.07 6.32 -39.52 -0.25 -0.32 16 17 Cl -0.07 -1.02 28.95 -51.86 -1.50 -2.52 16 18 C -0.15 -1.93 9.82 -39.51 -0.39 -2.31 16 19 C -0.08 -0.97 9.82 -39.58 -0.39 -1.36 16 20 C -0.09 -1.34 6.34 -39.32 -0.25 -1.59 16 21 Cl -0.07 -0.91 27.71 -51.86 -1.44 -2.34 16 22 C 0.13 2.65 6.60 -67.93 -0.45 2.20 16 23 C -0.20 -3.83 9.77 -26.70 -0.26 -4.09 16 24 C -0.22 -4.03 10.09 -26.69 -0.27 -4.30 16 25 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 26 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 27 H 0.13 2.87 6.27 -51.93 -0.33 2.55 16 28 H 0.41 6.44 7.62 -40.82 -0.31 6.12 16 29 H 0.18 3.62 5.42 -52.49 -0.28 3.34 16 30 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.14 1.38 8.06 -52.48 -0.42 0.95 16 32 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.10 2.07 6.63 -51.93 -0.34 1.73 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -28.26 333.02 -10.02 -38.28 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -3.70 Total: 9.13 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -3.45 Total: -2.62 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.01 Total: -48.88 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.07 Total: -12.71 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -2.94 Total: -4.87 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.26 -10.02 -38.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063516366.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.631 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds