Wall clock time and date at job start Tue Mar 31 2020 14:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 120.00158 * 2 1 4 4 H 1.48506 * 109.46803 * 239.99448 * 3 2 1 5 5 H 1.48497 * 109.47032 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47429 * 119.99690 * 3 2 1 7 7 C 1.38811 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99742 * 172.79864 * 7 2 1 9 9 N 1.36937 * 119.99976 * 352.81371 * 7 2 1 10 10 C 1.46489 * 120.00398 * 22.25491 * 9 7 2 11 11 C 1.50706 * 109.47230 * 270.00256 * 10 9 7 12 12 O 1.21286 * 120.00038 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99978 * 179.72062 * 11 10 9 14 14 C 1.39973 * 119.99903 * 174.53272 * 13 11 10 15 15 C 1.38835 * 120.06873 * 340.49021 * 14 13 11 16 16 C 1.38225 * 119.92921 * 179.81431 * 15 14 13 17 17 Cl 1.73603 * 119.96762 * 180.22857 * 16 15 14 18 18 C 1.38411 * 120.06732 * 0.43738 * 16 15 14 19 19 C 1.38247 * 120.13420 * 359.79005 * 18 16 15 20 20 C 1.38232 * 120.06909 * 359.97438 * 19 18 16 21 21 Cl 1.73604 * 120.03102 * 179.97438 * 20 19 18 22 22 C 1.46504 * 119.99473 * 202.26189 * 9 7 2 23 23 C 1.52995 * 117.50410 * 14.19568 * 22 9 7 24 24 C 1.53001 * 117.49933 * 305.53329 * 22 9 7 25 25 H 0.96997 * 119.99356 * 5.03164 * 1 2 3 26 26 H 1.09004 * 109.47558 * 150.00620 * 10 9 7 27 27 H 1.08998 * 109.47183 * 30.00370 * 10 9 7 28 28 H 0.97000 * 120.00026 * 354.53975 * 13 11 10 29 29 H 1.08002 * 120.03510 * 359.97438 * 15 14 13 30 30 H 1.07996 * 119.93423 * 179.76754 * 18 16 15 31 31 H 1.08003 * 119.96495 * 179.97438 * 19 18 16 32 32 H 1.09001 * 115.54787 * 159.87251 * 22 9 7 33 33 H 1.09004 * 117.49389 * 0.02562 * 23 22 9 34 34 H 1.08994 * 117.49962 * 145.02030 * 23 22 9 35 35 H 1.08993 * 117.50695 * 214.98019 * 24 22 9 36 36 H 1.09007 * 117.49839 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0839 -1.2059 -0.1167 9 7 1.3336 -2.3833 0.1494 10 6 -0.0932 -2.4560 -0.1744 11 6 -0.9043 -2.1279 1.0527 12 8 -0.3454 -1.8593 2.0950 13 7 -2.2506 -2.1269 0.9902 14 6 -3.0051 -1.9354 2.1536 15 6 -2.4293 -2.1478 3.3989 16 6 -3.1758 -1.9541 4.5460 17 17 -2.4551 -2.2138 6.1038 18 6 -4.4987 -1.5574 4.4537 19 6 -5.0761 -1.3496 3.2149 20 6 -4.3333 -1.5370 2.0643 21 17 -5.0596 -1.2764 0.5091 22 6 2.0366 -3.5743 0.6328 23 6 3.4154 -3.3731 1.2647 24 6 3.2943 -4.0076 -0.1231 25 1 -0.4849 0.8368 -0.0737 26 1 -0.3382 -3.4627 -0.5133 27 1 -0.3235 -1.7408 -0.9641 28 1 -2.6968 -2.2591 0.1391 29 1 -1.3984 -2.4617 3.4714 30 1 -5.0810 -1.4103 5.3512 31 1 -6.1087 -1.0405 3.1460 32 1 1.4029 -4.3587 1.0466 33 1 3.7992 -2.3544 1.3212 34 1 3.6889 -4.0252 2.0940 35 1 3.4884 -5.0769 -0.2061 36 1 3.5985 -3.4068 -0.9803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063516366.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:31 Heat of formation + Delta-G solvation = 29.021312 kcal Electronic energy + Delta-G solvation = -23516.051124 eV Core-core repulsion = 19860.659416 eV Total energy + Delta-G solvation = -3655.391708 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.39286 -39.62650 -38.43219 -37.77717 -37.15678 -35.51745 -35.20413 -32.46478 -31.61581 -30.77668 -28.35687 -25.75335 -24.24095 -23.41410 -22.96749 -21.80136 -21.22473 -19.23080 -18.29450 -17.81757 -17.56057 -17.37479 -16.31984 -16.16783 -15.94068 -15.76076 -15.44870 -14.80682 -14.77768 -14.50840 -14.17917 -13.63582 -13.44267 -13.39322 -13.03018 -12.91563 -12.78253 -12.49584 -12.30183 -12.22031 -12.09787 -12.02791 -11.98325 -11.92591 -11.59847 -11.31198 -10.97056 -10.56426 -10.26281 -9.71540 -8.97012 -8.64603 -7.90146 -5.30289 -0.07249 0.22278 0.96513 1.16456 1.41193 1.46813 1.49407 2.12472 2.26984 2.46277 2.72724 3.20315 3.43124 3.49189 3.70954 4.08782 4.13637 4.21729 4.26854 4.41375 4.45628 4.49927 4.76829 4.85636 4.94296 4.96795 5.00232 5.08191 5.22444 5.29012 5.39745 5.42391 5.51563 5.63053 5.88610 6.29217 6.68906 7.12372 7.66992 7.85097 8.20860 9.11668 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011189 B = 0.004592 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.747861 B = 6095.955016 C = 6825.622936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.036 4.036 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.294 1.294 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.557 5.557 10 C 0.167 3.833 11 C 0.533 3.467 12 O -0.549 6.549 13 N -0.669 5.669 14 C 0.184 3.816 15 C -0.155 4.155 16 C -0.014 4.014 17 Cl -0.066 7.066 18 C -0.130 4.130 19 C -0.064 4.064 20 C -0.089 4.089 21 Cl -0.054 7.054 22 C 0.104 3.896 23 C -0.202 4.202 24 C -0.194 4.194 25 H 0.247 0.753 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.415 0.585 29 H 0.143 0.857 30 H 0.170 0.830 31 H 0.177 0.823 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.641 -6.793 3.533 13.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.231 4.231 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.273 5.273 10 C 0.037 3.963 11 C 0.323 3.677 12 O -0.425 6.425 13 N -0.313 5.313 14 C 0.084 3.916 15 C -0.177 4.177 16 C -0.041 4.041 17 Cl -0.037 7.037 18 C -0.150 4.150 19 C -0.083 4.083 20 C -0.120 4.120 21 Cl -0.025 7.025 22 C -0.004 4.004 23 C -0.241 4.241 24 C -0.235 4.235 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.125 0.875 28 H 0.252 0.748 29 H 0.160 0.840 30 H 0.187 0.813 31 H 0.194 0.806 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.209 -6.465 4.203 13.605 hybrid contribution 0.569 1.317 -0.290 1.464 sum -10.640 -5.147 3.913 12.450 Atomic orbital electron populations 1.69685 1.05631 1.25368 1.56016 1.25470 0.96423 1.00187 1.01015 0.85408 0.77561 0.80133 0.77656 1.19902 1.22331 1.22154 1.19283 0.92142 0.84001 1.42139 0.91002 1.43385 1.04655 1.06464 1.72810 1.20770 0.82393 0.99622 0.93544 1.22514 0.80369 0.73083 0.91721 1.90426 1.71040 1.47552 1.33460 1.43945 1.07093 1.71475 1.08817 1.17718 0.89966 0.96112 0.87788 1.21406 1.02201 1.04181 0.89889 1.20961 0.94329 1.02642 0.86214 1.98354 1.84007 1.95008 1.26306 1.21181 0.92382 1.02137 0.99316 1.21127 1.01167 0.97314 0.88676 1.20830 0.92854 1.09444 0.88828 1.98351 1.82089 1.95184 1.26851 1.21265 0.87681 0.91099 1.00360 1.23104 1.03159 1.01093 0.96766 1.23373 1.05331 1.00491 0.94273 0.94254 0.91156 0.87461 0.74773 0.84005 0.81286 0.80594 0.87745 0.91157 0.88249 0.87149 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.54 8.19 21.65 0.18 -49.36 16 2 C -0.04 -1.94 5.40 84.86 0.46 -1.48 16 3 Si 0.96 45.54 29.56 68.60 2.03 47.57 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 7 C -0.25 -12.92 8.71 84.03 0.73 -12.19 16 8 H 0.07 3.77 6.53 -2.91 -0.02 3.75 16 9 N -0.56 -26.36 2.38 -682.35 -1.62 -27.98 16 10 C 0.17 7.22 5.47 85.64 0.47 7.69 16 11 C 0.53 23.71 5.62 87.66 0.49 24.21 16 12 O -0.55 -28.80 13.09 -3.05 -0.04 -28.84 16 13 N -0.67 -24.64 5.26 -303.42 -1.60 -26.23 16 14 C 0.18 6.44 6.50 38.16 0.25 6.69 16 15 C -0.16 -5.73 8.57 22.41 0.19 -5.54 16 16 C -0.01 -0.42 6.32 22.31 0.14 -0.28 16 17 Cl -0.07 -1.86 28.95 -2.72 -0.08 -1.94 16 18 C -0.13 -3.02 9.82 22.31 0.22 -2.80 16 19 C -0.06 -1.43 9.82 22.27 0.22 -1.21 16 20 C -0.09 -2.52 6.34 22.44 0.14 -2.38 16 21 Cl -0.05 -1.34 27.71 -2.72 -0.08 -1.42 16 22 C 0.10 4.21 6.60 44.99 0.30 4.51 16 23 C -0.20 -7.71 9.77 30.62 0.30 -7.42 16 24 C -0.19 -6.69 10.09 30.62 0.31 -6.38 16 25 H 0.25 13.51 8.32 -92.71 -0.77 12.74 16 26 H 0.07 2.52 8.07 -2.39 -0.02 2.50 16 27 H 0.11 5.04 6.27 -2.39 -0.01 5.02 16 28 H 0.41 13.18 7.62 -92.71 -0.71 12.48 16 29 H 0.14 6.23 5.42 -2.91 -0.02 6.21 16 30 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 31 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 33 H 0.07 3.06 6.63 -2.39 -0.02 3.04 16 34 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 Total: -1.00 -63.02 333.02 3.44 -59.57 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.43 Total: 25.21 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 4.22 Total: 3.42 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -3.04 Total: -103.58 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.04 Total: -28.84 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 17 Polarization: -3.20 SS G_CDS: -0.15 Total: -3.36 kcal Total: -63.02 3.44 -59.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063516366.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.594 kcal (2) G-P(sol) polarization free energy of solvation -63.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds