Wall clock time and date at job start Tue Mar 31 2020 15:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 120.00061 * 2 1 4 4 H 1.48509 * 109.47239 * 270.00144 * 3 2 1 5 5 H 1.48501 * 109.47237 * 29.99894 * 3 2 1 6 6 H 1.48504 * 109.47159 * 149.99989 * 3 2 1 7 7 C 1.37876 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00175 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47225 * 180.02562 * 9 7 2 11 11 O 1.42901 * 109.47046 * 179.97438 * 10 9 7 12 12 C 1.35905 * 116.99604 * 179.97438 * 11 10 9 13 13 C 1.38722 * 120.05728 * 359.72917 * 12 11 10 14 14 C 1.38150 * 119.94161 * 179.74227 * 13 12 11 15 15 C 1.50704 * 119.97223 * 180.27212 * 14 13 12 16 16 F 1.39899 * 109.47158 * 270.23519 * 15 14 13 17 17 F 1.39899 * 109.46826 * 30.23346 * 15 14 13 18 18 F 1.39897 * 109.46876 * 150.23364 * 15 14 13 19 19 C 1.38261 * 120.05672 * 0.50783 * 14 13 12 20 20 C 1.38268 * 120.10988 * 359.76619 * 19 14 13 21 21 C 1.50704 * 119.97155 * 180.02562 * 20 19 14 22 22 F 1.39899 * 109.46908 * 179.97438 * 21 20 19 23 23 F 1.39899 * 109.46935 * 299.97741 * 21 20 19 24 24 F 1.39897 * 109.47169 * 59.97793 * 21 20 19 25 25 C 1.38139 * 120.05525 * 359.97438 * 20 19 14 26 26 H 0.97005 * 119.99444 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47163 * 59.99504 * 9 7 2 28 28 H 1.09007 * 109.46696 * 299.99741 * 9 7 2 29 29 H 1.08996 * 109.47090 * 59.99528 * 10 9 7 30 30 H 1.08999 * 109.47084 * 299.99701 * 10 9 7 31 31 H 1.08006 * 120.03385 * 359.97438 * 13 12 11 32 32 H 1.08001 * 119.94795 * 179.74501 * 19 14 13 33 33 H 1.08005 * 120.02930 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5307 -4.8996 0.0024 12 6 2.2709 -6.0394 0.0030 13 6 3.6563 -5.9682 -0.0026 14 6 4.4064 -7.1282 0.0034 15 6 5.9115 -7.0516 0.0035 16 9 6.3774 -7.0291 -1.3154 17 9 6.3190 -5.8865 0.6620 18 9 6.4352 -8.1681 0.6641 19 6 3.7775 -8.3595 0.0045 20 6 2.3968 -8.4332 0.0044 21 6 1.7146 -9.7770 0.0061 22 9 0.3274 -9.5956 0.0062 23 9 2.0913 -10.4927 -1.1354 24 9 2.0917 -10.4900 1.1491 25 6 1.6422 -7.2761 0.0038 26 1 -0.4849 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8712 -3.6039 0.8922 30 1 2.8725 -3.6048 -0.8877 31 1 4.1481 -5.0066 -0.0079 32 1 4.3657 -9.2654 0.0050 33 1 0.5637 -7.3342 0.0033 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070192480.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:05 Heat of formation + Delta-G solvation = -324.924042 kcal Electronic energy + Delta-G solvation = -27657.297533 eV Core-core repulsion = 22432.275056 eV Total energy + Delta-G solvation = -5225.022478 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.064 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.41823 -50.37362 -47.92191 -47.88709 -47.87504 -47.82748 -40.45284 -37.86105 -33.57147 -32.96618 -31.29549 -29.82903 -26.65942 -26.47679 -25.07489 -22.49435 -22.35957 -20.95118 -19.52738 -18.84083 -18.75967 -18.68108 -18.41438 -17.21789 -17.00172 -16.60349 -16.00728 -15.86063 -15.74152 -14.78573 -14.72016 -14.67235 -14.63556 -14.48422 -14.29896 -14.26725 -14.05700 -14.01737 -14.00757 -13.97798 -13.43496 -13.29803 -13.12337 -12.81116 -12.45580 -12.13958 -11.92500 -11.73906 -11.04563 -11.00994 -10.71913 -10.15946 -9.83628 -9.82885 -9.43373 -8.57820 -8.49346 -6.20001 -4.25675 0.35755 0.75834 2.22170 2.43555 2.93432 3.18315 3.22041 3.29186 3.31967 3.35898 3.46900 3.86959 3.88154 4.10487 4.19639 4.32342 4.53283 4.61838 4.69624 4.87887 5.15946 5.16952 5.56780 5.62716 5.65284 5.76769 5.89537 6.02578 6.43055 7.22878 7.47418 7.54849 7.80428 8.10006 8.79498 9.39726 10.91316 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012839 B = 0.003354 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.337534 B = 8346.493170 C =10177.082400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.058 3.942 11 O -0.301 6.301 12 C 0.151 3.849 13 C -0.137 4.137 14 C -0.143 4.143 15 C 0.512 3.488 16 F -0.173 7.173 17 F -0.171 7.171 18 F -0.175 7.175 19 C -0.075 4.075 20 C -0.148 4.148 21 C 0.515 3.485 22 F -0.172 7.172 23 F -0.174 7.174 24 F -0.173 7.173 25 C -0.084 4.084 26 H 0.265 0.735 27 H 0.030 0.970 28 H 0.030 0.970 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.772 -19.452 0.008 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.016 4.016 11 O -0.213 6.213 12 C 0.103 3.897 13 C -0.155 4.155 14 C -0.145 4.145 15 C 0.458 3.542 16 F -0.154 7.154 17 F -0.152 7.152 18 F -0.156 7.156 19 C -0.093 4.093 20 C -0.150 4.150 21 C 0.461 3.539 22 F -0.153 7.153 23 F -0.155 7.155 24 F -0.155 7.155 25 C -0.102 4.102 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.172 0.828 32 H 0.162 0.838 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.420 -19.309 0.013 20.686 hybrid contribution 0.814 0.826 -0.011 1.160 sum 8.234 -18.483 0.002 20.234 Atomic orbital electron populations 1.69970 1.06126 1.27162 1.49296 1.24979 0.94913 0.99449 0.94694 0.86471 0.79753 0.82788 0.78303 1.20428 1.20987 1.19692 1.20931 0.93084 0.90035 1.52831 0.92250 1.19145 0.94068 0.88706 0.99163 1.23585 0.97550 0.80209 1.00227 1.86277 1.35975 1.12942 1.86150 1.18807 0.89149 0.88156 0.93542 1.21393 0.93642 0.99268 1.01240 1.19585 0.91130 0.95088 1.08689 1.18122 0.88136 0.73895 0.74065 1.93246 1.90244 1.96128 1.35782 1.93231 1.91897 1.49040 1.81063 1.93199 1.88455 1.52897 1.81077 1.20355 0.92983 0.97431 0.98560 1.19522 0.94179 0.91917 1.09362 1.18038 0.76746 0.85135 0.73993 1.93200 1.30629 1.95273 1.96196 1.93234 1.91105 1.80170 1.50971 1.93234 1.91092 1.80290 1.50844 1.20459 1.01807 0.88586 0.99390 0.92578 0.95161 0.95153 0.92433 0.92490 0.82817 0.83754 0.82606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.53 -14.02 9.11 -34.44 -0.31 -14.33 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 10 C 0.06 1.09 4.68 37.16 0.17 1.27 16 11 O -0.30 -5.26 10.14 -19.44 -0.20 -5.46 16 12 C 0.15 2.16 6.69 -39.22 -0.26 1.90 16 13 C -0.14 -1.79 8.39 -39.43 -0.33 -2.12 16 14 C -0.14 -1.68 5.45 -104.64 -0.57 -2.25 16 15 C 0.51 5.80 3.36 36.01 0.12 5.92 16 16 F -0.17 -2.02 17.30 2.25 0.04 -1.98 16 17 F -0.17 -2.08 16.47 2.25 0.04 -2.04 16 18 F -0.17 -1.89 16.46 2.25 0.04 -1.85 16 19 C -0.07 -0.80 8.95 -39.56 -0.35 -1.15 16 20 C -0.15 -1.65 5.37 -104.65 -0.56 -2.21 16 21 C 0.52 5.36 3.32 36.01 0.12 5.48 16 22 F -0.17 -1.85 15.97 2.25 0.04 -1.81 16 23 F -0.17 -1.81 17.24 2.25 0.04 -1.77 16 24 F -0.17 -1.81 17.24 2.25 0.04 -1.77 16 25 C -0.08 -1.03 9.37 -39.43 -0.37 -1.40 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.06 1.02 7.68 -51.93 -0.40 0.62 16 30 H 0.06 1.01 7.65 -51.93 -0.40 0.61 16 31 H 0.15 1.98 5.85 -52.48 -0.31 1.67 16 32 H 0.14 1.26 7.60 -52.49 -0.40 0.86 16 33 H 0.16 1.75 7.15 -52.48 -0.38 1.38 16 LS Contribution 318.69 15.07 4.80 4.80 Total: -1.00 -27.40 318.69 -4.31 -31.71 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: -2.26 Total: -3.85 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -2.59 Total: -6.80 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.74 Total: -24.69 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.20 Total: -5.46 kcal Atomic # 9 Polarization: -11.45 SS G_CDS: 0.23 Total: -11.23 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.40 -4.31 -31.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070192480.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -293.218 kcal (2) G-P(sol) polarization free energy of solvation -27.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -320.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -324.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds