Wall clock time and date at job start Tue Mar 31 2020 14:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00000 * 2 1 4 4 H 1.48500 * 109.46819 * 274.05621 * 3 2 1 5 5 H 1.48501 * 109.47187 * 34.05394 * 3 2 1 6 6 H 1.48496 * 109.47173 * 154.05788 * 3 2 1 7 7 C 1.38813 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99745 * 340.11810 * 7 2 1 9 9 N 1.36938 * 119.99753 * 159.84342 * 7 2 1 10 10 C 1.46965 * 120.59181 * 149.94609 * 9 7 2 11 11 C 1.53815 * 108.39607 * 124.75925 * 10 9 7 12 12 N 1.46962 * 108.57752 * 49.63970 * 11 10 9 13 13 C 1.34776 * 120.59298 * 124.67487 * 12 11 10 14 14 O 1.21563 * 120.00059 * 1.57255 * 13 12 11 15 15 C 1.47772 * 119.99624 * 181.57957 * 13 12 11 16 16 C 1.39614 * 120.15221 * 326.55458 * 15 13 12 17 17 C 1.38010 * 119.85390 * 179.76845 * 16 15 13 18 18 Cl 1.73601 * 119.92580 * 180.23372 * 17 16 15 19 19 C 1.38538 * 120.15378 * 0.51921 * 17 16 15 20 20 C 1.38251 * 120.30259 * 359.73336 * 19 17 16 21 21 C 1.38161 * 120.14512 * 0.02562 * 20 19 17 22 22 Cl 1.73598 * 120.07685 * 179.97438 * 21 20 19 23 23 C 1.46968 * 118.81352 * 304.64194 * 12 11 10 24 24 C 1.46962 * 120.59553 * 330.23103 * 9 7 2 25 25 H 0.97000 * 120.00067 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.61156 * 244.54368 * 10 9 7 27 27 H 1.08999 * 109.60852 * 5.05362 * 10 9 7 28 28 H 1.08999 * 109.74193 * 289.84972 * 11 10 9 29 29 H 1.08997 * 109.53303 * 169.30451 * 11 10 9 30 30 H 1.08006 * 120.07242 * 0.02562 * 16 15 13 31 31 H 1.07996 * 119.84647 * 179.71914 * 19 17 16 32 32 H 1.07997 * 119.92769 * 179.97438 * 20 19 17 33 33 H 1.09005 * 109.60881 * 295.48811 * 23 12 11 34 34 H 1.08998 * 109.61004 * 174.97274 * 23 12 11 35 35 H 1.09005 * 109.61261 * 354.94469 * 24 9 7 36 36 H 1.08999 * 109.61152 * 115.45792 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4119 2.0959 -1.3966 5 1 1.4931 2.6265 0.7840 6 1 3.5880 1.4170 0.6125 7 6 2.0102 -1.2022 0.0005 8 1 1.5185 -2.1094 0.3190 9 7 3.3167 -1.2387 -0.4081 10 6 4.2484 -2.2273 0.1526 11 6 4.8727 -3.0192 -1.0089 12 7 5.3698 -2.0664 -2.0114 13 6 6.6556 -2.1024 -2.4136 14 8 7.4085 -2.9463 -1.9678 15 6 7.1502 -1.1159 -3.3964 16 6 6.3031 -0.6392 -4.3986 17 6 6.7700 0.2857 -5.3103 18 17 5.7165 0.8843 -6.5535 19 6 8.0792 0.7332 -5.2393 20 6 8.9251 0.2615 -4.2528 21 6 8.4693 -0.6608 -3.3306 22 17 9.5332 -1.2524 -2.0930 23 6 4.4395 -1.0741 -2.5680 24 6 3.8137 -0.2859 -1.4106 25 1 -0.4850 0.8400 -0.0004 26 1 5.0312 -1.7158 0.7126 27 1 3.7079 -2.9066 0.8117 28 1 4.1201 -3.6657 -1.4603 29 1 5.7003 -3.6223 -0.6355 30 1 5.2834 -0.9903 -4.4577 31 1 8.4407 1.4536 -5.9581 32 1 9.9447 0.6141 -4.2033 33 1 3.6560 -1.5822 -3.1303 34 1 4.9809 -0.3927 -3.2241 35 1 2.9862 0.3173 -1.7840 36 1 4.5663 0.3607 -0.9592 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071138060.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:30 Heat of formation + Delta-G solvation = 41.369588 kcal Electronic energy + Delta-G solvation = -23727.591575 eV Core-core repulsion = 20072.735328 eV Total energy + Delta-G solvation = -3654.856247 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.72476 -38.82282 -37.26704 -36.83814 -36.39701 -34.20093 -32.44348 -31.35533 -30.84673 -30.42593 -27.41042 -24.67320 -23.99234 -23.05948 -22.68773 -21.00352 -19.44370 -17.77470 -17.18780 -16.50375 -16.47432 -15.66185 -15.40539 -15.35367 -14.69639 -14.54176 -14.31657 -13.92440 -13.75813 -13.65780 -12.95148 -12.73727 -12.57576 -12.54009 -12.30728 -12.12748 -11.79555 -11.35082 -11.26196 -11.13239 -11.07309 -10.92717 -10.46057 -10.34063 -10.17152 -9.73618 -9.63348 -9.30054 -8.94879 -8.87539 -8.40110 -7.02848 -6.05677 -3.44971 0.36989 0.61181 1.66399 1.93743 2.60374 3.00522 3.21804 3.34404 3.41329 3.43933 4.17404 4.28891 4.42461 4.59793 4.73128 4.79165 4.90001 5.18860 5.28038 5.35619 5.40550 5.48045 5.59279 5.64089 5.72059 5.75929 5.94547 5.99850 6.06470 6.11889 6.34787 6.42280 6.64020 6.77310 7.54980 7.84553 8.21712 8.23699 8.80952 9.59593 9.96782 11.09928 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.004934 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.957991 B = 5673.239579 C = 7023.134680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.028 3.972 3 Si 0.877 3.123 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.270 1.270 7 C -0.265 4.265 8 H 0.087 0.913 9 N -0.604 5.604 10 C 0.134 3.866 11 C 0.096 3.904 12 N -0.587 5.587 13 C 0.551 3.449 14 O -0.525 6.525 15 C -0.105 4.105 16 C -0.081 4.081 17 C -0.043 4.043 18 Cl -0.054 7.054 19 C -0.079 4.079 20 C -0.108 4.108 21 C 0.013 3.987 22 Cl -0.031 7.031 23 C 0.057 3.943 24 C 0.115 3.885 25 H 0.264 0.736 26 H 0.029 0.971 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.166 0.834 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.773 1.288 -12.022 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.171 4.171 3 Si 0.707 3.293 4 H -0.214 1.214 5 H -0.228 1.228 6 H -0.195 1.195 7 C -0.393 4.393 8 H 0.105 0.895 9 N -0.328 5.328 10 C 0.007 3.993 11 C -0.027 4.027 12 N -0.319 5.319 13 C 0.338 3.662 14 O -0.403 6.403 15 C -0.109 4.109 16 C -0.100 4.100 17 C -0.070 4.070 18 Cl -0.025 7.025 19 C -0.098 4.098 20 C -0.127 4.127 21 C -0.016 4.016 22 Cl -0.002 7.002 23 C -0.066 4.066 24 C -0.012 4.012 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.184 0.816 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 16.961 0.903 -11.719 20.635 hybrid contribution 0.244 1.205 -0.044 1.231 sum 17.205 2.108 -11.762 20.948 Atomic orbital electron populations 1.69823 1.05728 1.26707 1.52304 1.25336 0.95208 0.97551 0.99031 0.87008 0.80275 0.84790 0.77242 1.21393 1.22779 1.19511 1.18915 0.84406 0.94733 1.41273 0.89516 1.44301 1.08019 1.36896 1.43559 1.21444 0.92676 0.92142 0.93002 1.22372 0.98933 0.91401 0.90018 1.47899 1.08606 1.33924 1.41481 1.17934 0.82259 0.84273 0.81711 1.90803 1.55187 1.37407 1.56886 1.19819 0.93004 1.00000 0.98113 1.21751 1.00624 0.95344 0.92293 1.20881 0.92449 0.99910 0.93723 1.98405 1.65508 1.86941 1.51656 1.21177 0.91243 0.99194 0.98212 1.21002 1.01058 0.96737 0.93874 1.21047 0.90794 0.96714 0.93009 1.98424 1.63391 1.87001 1.51349 1.23323 0.92861 0.91986 0.98470 1.21714 0.97705 0.92395 0.89350 0.92605 0.95303 0.90347 0.91065 0.89336 0.81648 0.83562 0.83353 0.90118 0.88634 0.89777 0.95140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.97 55.49 0.78 -25.93 16 2 C 0.03 0.79 5.22 -17.43 -0.09 0.70 16 3 Si 0.88 21.47 24.41 -169.99 -4.15 17.32 16 4 H -0.29 -6.64 6.70 56.52 0.38 -6.27 16 5 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.27 -6.61 6.66 56.52 0.38 -6.23 16 7 C -0.27 -7.07 10.01 -15.06 -0.15 -7.22 16 8 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 9 N -0.60 -13.66 2.70 -171.77 -0.46 -14.13 16 10 C 0.13 2.57 6.70 -3.36 -0.02 2.54 16 11 C 0.10 1.61 6.61 -3.37 -0.02 1.59 16 12 N -0.59 -9.79 2.95 -173.35 -0.51 -10.30 16 13 C 0.55 9.06 7.22 -12.36 -0.09 8.97 16 14 O -0.53 -9.67 14.34 5.31 0.08 -9.60 16 15 C -0.11 -1.45 5.52 -104.94 -0.58 -2.03 16 16 C -0.08 -0.96 7.21 -39.15 -0.28 -1.25 16 17 C -0.04 -0.44 6.31 -39.55 -0.25 -0.69 16 18 Cl -0.05 -0.53 28.95 -51.86 -1.50 -2.03 16 19 C -0.08 -0.68 9.82 -39.47 -0.39 -1.07 16 20 C -0.11 -1.00 9.82 -39.60 -0.39 -1.39 16 21 C 0.01 0.16 6.34 -39.07 -0.25 -0.09 16 22 Cl -0.03 -0.42 26.60 -51.86 -1.38 -1.79 16 23 C 0.06 0.93 5.12 -3.59 -0.02 0.91 16 24 C 0.11 2.35 4.37 -3.60 -0.02 2.33 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 1.45 7.93 -51.93 -0.41 1.04 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.44 7.00 -51.93 -0.36 1.07 16 30 H 0.17 1.89 5.40 -52.48 -0.28 1.61 16 31 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.10 1.34 3.50 -53.46 -0.19 1.15 16 35 H 0.08 1.84 4.67 -51.93 -0.24 1.60 16 36 H 0.03 0.64 7.15 -51.93 -0.37 0.27 16 LS Contribution 317.20 15.07 4.78 4.78 Total: -1.00 -30.90 317.20 -8.50 -39.40 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -3.58 Total: -1.04 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -2.54 Total: 3.32 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.20 Total: -50.36 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.15 Total: 17.32 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -2.88 Total: -3.82 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.90 -8.50 -39.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071138060.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.765 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds