Wall clock time and date at job start Tue Mar 31 2020 15:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86794 * 120.00184 * 2 1 4 4 H 1.48496 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47122 * 300.00408 * 3 2 1 6 6 H 1.48500 * 109.47339 * 60.00235 * 3 2 1 7 7 C 1.38651 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00211 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99935 * 185.05715 * 9 7 2 11 11 C 1.38882 * 120.06744 * 174.18760 * 10 9 7 12 12 C 1.38104 * 119.92852 * 179.74739 * 11 10 9 13 13 C 1.38296 * 120.06820 * 0.53125 * 12 11 10 14 14 C 1.50706 * 119.92845 * 179.76407 * 13 12 11 15 15 C 1.50696 * 109.46985 * 269.97928 * 14 13 12 16 16 N 1.30970 * 126.42702 * 89.71815 * 15 14 13 17 17 C 1.35270 * 105.57873 * 179.89060 * 16 15 14 18 18 C 1.48231 * 126.42089 * 180.09582 * 17 16 15 19 19 C 1.39597 * 122.84228 * 180.29366 * 18 17 16 20 20 C 1.33161 * 113.73325 * 180.02562 * 19 18 17 21 21 S 1.75734 * 109.75022 * 0.02562 * 20 19 18 22 22 C 1.34460 * 122.85076 * 0.02562 * 18 17 16 23 23 N 1.30873 * 107.14645 * 0.37132 * 17 16 15 24 24 O 1.21281 * 110.07710 * 359.76385 * 23 17 16 25 25 C 1.38303 * 120.14120 * 359.74604 * 13 12 11 26 26 C 1.38099 * 120.06407 * 359.97438 * 25 13 12 27 27 H 0.97003 * 119.99701 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.03720 * 0.03026 * 11 10 9 29 29 H 1.08007 * 119.96381 * 180.27376 * 12 11 10 30 30 H 1.08999 * 109.47088 * 29.98285 * 14 13 12 31 31 H 1.09003 * 109.46829 * 149.97895 * 14 13 12 32 32 H 1.07997 * 123.13466 * 359.97438 * 19 18 17 33 33 H 1.08001 * 125.12665 * 179.97438 * 20 19 18 34 34 H 1.07992 * 124.73977 * 359.97438 * 22 18 17 35 35 H 1.07996 * 119.96539 * 180.02562 * 25 13 12 36 36 H 1.08007 * 120.03117 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1055 11 6 1.4365 -4.7340 0.2336 12 6 2.1873 -5.8885 0.3360 13 6 3.5685 -5.8204 0.3223 14 6 4.3848 -7.0818 0.4397 15 6 4.6646 -7.3657 1.8930 16 7 3.9205 -8.0755 2.7040 17 6 4.5624 -8.0583 3.8946 18 6 4.1197 -8.7241 5.1428 19 6 4.8406 -8.6519 6.3360 20 6 4.2780 -9.3170 7.3432 21 16 2.7872 -10.0709 6.7977 22 6 2.9871 -9.4444 5.2231 23 7 5.6443 -7.3386 3.7393 24 8 5.7159 -6.9354 2.5976 25 6 4.2023 -4.5972 0.2007 26 6 3.4571 -3.4396 0.0921 27 1 -0.4850 0.8401 0.0004 28 1 0.3579 -4.7874 0.2484 29 1 1.6953 -6.8453 0.4312 30 1 3.8307 -7.9147 0.0069 31 1 5.3269 -6.9559 -0.0939 32 1 5.7685 -8.1081 6.4331 33 1 4.6780 -9.3839 8.3441 34 1 2.3014 -9.6062 4.4047 35 1 5.2811 -4.5473 0.1899 36 1 3.9526 -2.4847 -0.0032 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074119658.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:49 Heat of formation + Delta-G solvation = 98.812694 kcal Electronic energy + Delta-G solvation = -23348.359367 eV Core-core repulsion = 19700.470596 eV Total energy + Delta-G solvation = -3647.888771 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.43551 -39.17120 -38.50473 -36.98946 -35.49584 -33.53981 -32.31866 -30.54451 -30.24598 -29.94925 -26.76427 -25.69829 -25.20580 -23.10030 -22.47853 -22.03665 -20.72234 -19.37643 -18.11190 -18.05890 -17.97463 -17.38124 -16.97364 -15.65413 -15.10750 -14.72443 -14.68318 -14.46874 -13.78022 -13.72007 -13.69338 -13.51808 -13.19055 -12.92337 -12.85606 -12.77254 -12.47391 -11.92973 -11.78123 -11.60635 -11.35766 -11.25534 -11.16071 -11.03990 -10.86580 -10.69342 -10.47459 -10.06634 -9.41790 -9.20534 -8.91471 -8.56762 -8.28296 -7.32425 -6.52893 -4.11538 0.49367 1.21262 1.27936 1.61881 1.81562 2.12318 2.13813 2.94835 2.96109 3.09018 3.10455 3.15762 3.56809 3.90766 4.06753 4.45949 4.68848 4.90624 5.01015 5.10588 5.14649 5.18069 5.22666 5.26266 5.52270 5.61427 5.67440 5.71850 5.78224 5.88333 6.06267 6.07405 6.12459 6.32033 6.59382 6.79642 6.95577 7.13494 7.23813 7.34992 7.70789 7.91995 8.19875 8.92579 9.60665 10.64729 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.002424 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.803457 B =11547.666657 C =12028.284308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.161 3.839 11 C -0.195 4.195 12 C -0.051 4.051 13 C -0.205 4.205 14 C 0.032 3.968 15 C 0.207 3.793 16 N -0.480 5.480 17 C 0.227 3.773 18 C -0.040 4.040 19 C -0.106 4.106 20 C -0.233 4.233 21 S 0.187 5.813 22 C -0.201 4.201 23 N -0.382 5.382 24 O 0.079 5.921 25 C -0.054 4.054 26 C -0.236 4.236 27 H 0.271 0.729 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.149 0.851 33 H 0.171 0.829 34 H 0.176 0.824 35 H 0.112 0.888 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.664 -18.508 8.593 22.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.075 6.075 10 C 0.106 3.894 11 C -0.214 4.214 12 C -0.070 4.070 13 C -0.207 4.207 14 C -0.007 4.007 15 C -0.013 4.013 16 N -0.213 5.213 17 C -0.045 4.045 18 C -0.055 4.055 19 C -0.137 4.137 20 C -0.368 4.368 21 S 0.452 5.548 22 C -0.341 4.341 23 N -0.090 5.090 24 O 0.019 5.981 25 C -0.072 4.072 26 C -0.255 4.255 27 H 0.081 0.919 28 H 0.137 0.863 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.121 0.879 32 H 0.167 0.833 33 H 0.188 0.812 34 H 0.194 0.806 35 H 0.130 0.870 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.368 -19.263 10.023 22.930 hybrid contribution 1.542 1.953 -0.856 2.631 sum 8.910 -17.310 9.167 21.519 Atomic orbital electron populations 1.70050 1.06015 1.27766 1.45510 1.25326 0.95870 0.98956 0.96351 0.85627 0.79182 0.80189 0.78337 1.18997 1.20037 1.20066 1.21416 0.91914 0.80707 1.52847 0.88834 1.83979 1.34525 1.11565 1.77471 1.19450 0.90352 0.88070 0.91547 1.20211 0.99717 0.90227 1.11232 1.20521 0.92618 0.97070 0.96762 1.18798 0.93414 0.92553 1.15952 1.19001 1.01781 0.98412 0.81536 1.29092 0.82915 0.90236 0.99102 1.71973 1.27853 1.21487 0.99986 1.23350 0.89560 0.97996 0.93604 1.16367 0.96550 1.02507 0.90089 1.20143 1.01610 1.01058 0.90848 1.25608 1.00752 1.06551 1.03874 1.83139 1.21781 1.49128 1.00745 1.25196 1.01721 1.03592 1.03629 1.74885 1.21014 1.15483 0.97628 1.85260 1.41591 1.55886 1.15336 1.20649 0.98545 0.91558 0.96475 1.21144 0.93763 0.98942 1.11648 0.91922 0.86316 0.86663 0.87102 0.87903 0.83333 0.81180 0.80626 0.87040 0.85302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.87 13.67 55.48 0.76 -24.11 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 5 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 7 C -0.39 -10.78 9.49 30.88 0.29 -10.49 16 8 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 9 O -0.17 -4.84 9.76 0.04 0.00 -4.84 16 10 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 11 C -0.19 -4.00 9.99 -39.39 -0.39 -4.39 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 13 C -0.21 -3.22 5.12 -104.57 -0.54 -3.75 16 14 C 0.03 0.37 5.97 -29.03 -0.17 0.20 16 15 C 0.21 2.91 7.73 -12.98 -0.10 2.81 16 16 N -0.48 -7.32 11.48 -9.86 -0.11 -7.43 16 17 C 0.23 3.47 7.88 -156.06 -1.23 2.24 16 18 C -0.04 -0.51 5.80 -106.62 -0.62 -1.13 16 19 C -0.11 -1.17 10.03 -40.84 -0.41 -1.58 16 20 C -0.23 -1.97 11.20 28.96 0.32 -1.64 16 21 S 0.19 1.51 23.09 -107.50 -2.48 -0.97 16 22 C -0.20 -2.21 10.67 29.40 0.31 -1.90 16 23 N -0.38 -6.02 12.10 30.99 0.38 -5.64 16 24 O 0.08 1.18 11.29 18.03 0.20 1.38 16 25 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 26 C -0.24 -4.93 9.17 -39.40 -0.36 -5.29 16 27 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 29 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 30 H 0.11 1.08 8.08 -51.93 -0.42 0.66 16 31 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.18 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.13 2.71 5.64 -52.48 -0.30 2.41 16 LS Contribution 340.51 15.07 5.13 5.13 Total: -1.00 -31.93 340.51 -8.24 -40.17 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -3.08 Total: 4.10 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -4.01 Total: -22.98 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 1.02 Total: -37.19 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: 0.20 Total: -3.46 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.48 Total: -0.97 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.93 -8.24 -40.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074119658.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.985 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds