Wall clock time and date at job start Tue Mar 31 2020 15:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86794 * 120.00184 * 2 1 4 4 H 1.48496 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47122 * 300.00408 * 3 2 1 6 6 H 1.48500 * 109.47339 * 60.00235 * 3 2 1 7 7 C 1.38651 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00211 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00088 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99935 * 185.05715 * 9 7 2 11 11 C 1.38882 * 120.06744 * 174.18760 * 10 9 7 12 12 C 1.38104 * 119.92852 * 179.74739 * 11 10 9 13 13 C 1.38296 * 120.06820 * 0.53125 * 12 11 10 14 14 C 1.50706 * 119.92845 * 179.76407 * 13 12 11 15 15 C 1.50696 * 109.46985 * 269.97928 * 14 13 12 16 16 N 1.30970 * 126.42702 * 89.71815 * 15 14 13 17 17 C 1.35270 * 105.57873 * 179.89060 * 16 15 14 18 18 C 1.48231 * 126.42089 * 180.09582 * 17 16 15 19 19 C 1.39597 * 122.84228 * 180.29366 * 18 17 16 20 20 C 1.33161 * 113.73325 * 180.02562 * 19 18 17 21 21 S 1.75734 * 109.75022 * 0.02562 * 20 19 18 22 22 C 1.34460 * 122.85076 * 0.02562 * 18 17 16 23 23 N 1.30873 * 107.14645 * 0.37132 * 17 16 15 24 24 O 1.21281 * 110.07710 * 359.76385 * 23 17 16 25 25 C 1.38303 * 120.14120 * 359.74604 * 13 12 11 26 26 C 1.38099 * 120.06407 * 359.97438 * 25 13 12 27 27 H 0.97003 * 119.99701 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.03720 * 0.03026 * 11 10 9 29 29 H 1.08007 * 119.96381 * 180.27376 * 12 11 10 30 30 H 1.08999 * 109.47088 * 29.98285 * 14 13 12 31 31 H 1.09003 * 109.46829 * 149.97895 * 14 13 12 32 32 H 1.07997 * 123.13466 * 359.97438 * 19 18 17 33 33 H 1.08001 * 125.12665 * 179.97438 * 20 19 18 34 34 H 1.07992 * 124.73977 * 359.97438 * 22 18 17 35 35 H 1.07996 * 119.96539 * 180.02562 * 25 13 12 36 36 H 1.08007 * 120.03117 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1055 11 6 1.4365 -4.7340 0.2336 12 6 2.1873 -5.8885 0.3360 13 6 3.5685 -5.8204 0.3223 14 6 4.3848 -7.0818 0.4397 15 6 4.6646 -7.3657 1.8930 16 7 3.9205 -8.0755 2.7040 17 6 4.5624 -8.0583 3.8946 18 6 4.1197 -8.7241 5.1428 19 6 4.8406 -8.6519 6.3360 20 6 4.2780 -9.3170 7.3432 21 16 2.7872 -10.0709 6.7977 22 6 2.9871 -9.4444 5.2231 23 7 5.6443 -7.3386 3.7393 24 8 5.7159 -6.9354 2.5976 25 6 4.2023 -4.5972 0.2007 26 6 3.4571 -3.4396 0.0921 27 1 -0.4850 0.8401 0.0004 28 1 0.3579 -4.7874 0.2484 29 1 1.6953 -6.8453 0.4312 30 1 3.8307 -7.9147 0.0069 31 1 5.3269 -6.9559 -0.0939 32 1 5.7685 -8.1081 6.4331 33 1 4.6780 -9.3839 8.3441 34 1 2.3014 -9.6062 4.4047 35 1 5.2811 -4.5473 0.1899 36 1 3.9526 -2.4847 -0.0032 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074119658.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:49 Heat of formation + Delta-G solvation = 78.656319 kcal Electronic energy + Delta-G solvation = -23349.233413 eV Core-core repulsion = 19700.470596 eV Total energy + Delta-G solvation = -3648.762817 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.55560 -40.83130 -39.32155 -38.61282 -36.61271 -34.84274 -34.14252 -31.91928 -31.74521 -30.74590 -28.23773 -27.05793 -26.63345 -24.13989 -23.66218 -23.47025 -22.16985 -20.27941 -19.86890 -19.20504 -18.97328 -18.69385 -18.32643 -16.56951 -16.48489 -16.44177 -16.07502 -15.86061 -15.50140 -15.09474 -14.63215 -14.56527 -14.44212 -14.24018 -13.97834 -13.81078 -13.62813 -13.42019 -12.99816 -12.93571 -12.82428 -12.54139 -12.44549 -12.30188 -12.14255 -12.10897 -11.95571 -11.19773 -11.18886 -10.82875 -9.95116 -9.80999 -9.34075 -9.00600 -8.49863 -6.18068 -0.37101 0.18246 0.57127 0.57885 0.58190 0.88650 0.92277 1.34389 1.42015 1.52615 1.88866 1.97722 2.15876 2.55421 2.82352 3.03981 3.16357 3.48608 3.89978 3.93655 3.99789 4.04307 4.17919 4.34501 4.44845 4.46479 4.54905 4.58044 4.74739 4.77545 4.85505 5.00613 5.06447 5.13332 5.16653 5.26698 5.27249 5.52965 5.68920 5.71053 6.00579 6.17181 6.95063 7.10767 7.74838 8.73472 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.002424 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.803457 B =11547.666657 C =12028.284308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.250 1.250 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.231 6.231 10 C 0.119 3.881 11 C -0.209 4.209 12 C -0.046 4.046 13 C -0.174 4.174 14 C 0.035 3.965 15 C 0.206 3.794 16 N -0.494 5.494 17 C 0.219 3.781 18 C -0.073 4.073 19 C -0.131 4.131 20 C -0.222 4.222 21 S 0.253 5.747 22 C -0.217 4.217 23 N -0.402 5.402 24 O 0.074 5.926 25 C -0.051 4.051 26 C -0.246 4.246 27 H 0.273 0.727 28 H 0.112 0.888 29 H 0.149 0.851 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.201 0.799 34 H 0.175 0.825 35 H 0.151 0.849 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.871 -21.084 9.527 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.173 1.173 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.137 6.137 10 C 0.068 3.932 11 C -0.229 4.229 12 C -0.064 4.064 13 C -0.176 4.176 14 C -0.003 4.003 15 C -0.014 4.014 16 N -0.227 5.227 17 C -0.053 4.053 18 C -0.089 4.089 19 C -0.161 4.161 20 C -0.358 4.358 21 S 0.518 5.482 22 C -0.357 4.357 23 N -0.111 5.111 24 O 0.016 5.984 25 C -0.069 4.069 26 C -0.266 4.266 27 H 0.082 0.918 28 H 0.130 0.870 29 H 0.166 0.834 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.218 0.782 34 H 0.193 0.807 35 H 0.169 0.831 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.613 -21.902 10.952 26.307 hybrid contribution 0.941 2.276 -1.032 2.670 sum 10.553 -19.626 9.920 24.392 Atomic orbital electron populations 1.70192 1.08058 1.28798 1.48773 1.26604 0.96851 1.02796 0.95813 0.84531 0.78328 0.74815 0.78564 1.17332 1.19172 1.19533 1.21885 0.92585 0.81353 1.53085 0.87904 1.83946 1.36112 1.12684 1.80960 1.20022 0.91799 0.87933 0.93403 1.20459 1.00031 0.90636 1.11730 1.20935 0.93399 0.97035 0.95020 1.19280 0.93277 0.94001 1.11042 1.19256 1.03493 0.96903 0.80622 1.29432 0.82567 0.89840 0.99552 1.71974 1.28295 1.22159 1.00311 1.23848 0.89306 0.97675 0.94439 1.16644 0.97994 1.04134 0.90133 1.20164 1.02119 1.02726 0.91074 1.26029 1.00513 1.04674 1.04565 1.82939 1.20376 1.46964 0.97915 1.25399 1.01191 1.03514 1.05607 1.74872 1.21746 1.16415 0.98068 1.85228 1.41936 1.55963 1.15248 1.21093 1.00418 0.90579 0.94774 1.21275 0.92953 1.00296 1.12026 0.91796 0.86990 0.83358 0.84143 0.83880 0.83762 0.78196 0.80706 0.83095 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.56 13.67 21.61 0.30 -56.26 16 2 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 3 Si 1.02 42.79 29.55 68.60 2.03 44.82 16 4 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.41 -23.96 9.49 67.92 0.64 -23.31 16 8 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 9 O -0.23 -13.85 9.76 -22.78 -0.22 -14.07 16 10 C 0.12 5.85 6.65 22.58 0.15 6.00 16 11 C -0.21 -8.76 9.99 22.39 0.22 -8.53 16 12 C -0.05 -1.46 9.69 22.25 0.22 -1.24 16 13 C -0.17 -4.84 5.12 -19.83 -0.10 -4.94 16 14 C 0.04 0.65 5.97 29.10 0.17 0.82 16 15 C 0.21 5.16 7.73 88.35 0.68 5.84 16 16 N -0.49 -14.04 11.48 -302.36 -3.47 -17.51 16 17 C 0.22 6.47 7.88 137.19 1.08 7.55 16 18 C -0.07 -1.82 5.80 -21.16 -0.12 -1.94 16 19 C -0.13 -2.72 10.03 21.45 0.22 -2.51 16 20 C -0.22 -3.17 11.20 66.68 0.75 -2.42 16 21 S 0.25 3.37 23.09 -56.49 -1.30 2.06 16 22 C -0.22 -4.43 10.67 66.96 0.71 -3.71 16 23 N -0.40 -12.23 12.10 -58.96 -0.71 -12.94 16 24 O 0.07 2.06 11.29 74.59 0.84 2.90 16 25 C -0.05 -1.60 9.69 22.25 0.22 -1.38 16 26 C -0.25 -10.35 9.17 22.39 0.21 -10.14 16 27 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 28 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 29 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 30 H 0.14 1.91 8.08 -2.39 -0.02 1.89 16 31 H 0.14 1.63 8.08 -2.39 -0.02 1.61 16 32 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 33 H 0.20 1.52 8.06 -2.91 -0.02 1.49 16 34 H 0.18 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.12 5.17 5.64 -2.91 -0.02 5.15 16 Total: -1.00 -76.61 340.51 4.10 -72.51 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 1.14 Total: 19.26 kcal Atomic # 6 Polarization: -46.28 SS G_CDS: 5.51 Total: -40.77 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -3.89 Total: -86.72 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.62 Total: -11.17 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -1.30 Total: 2.06 kcal Total: -76.61 4.10 -72.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074119658.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.162 kcal (2) G-P(sol) polarization free energy of solvation -76.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds