Wall clock time and date at job start Tue Mar 31 2020 14:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31330 * 1 3 3 Si 1.86803 * 120.00200 * 2 1 4 4 H 1.48503 * 109.46734 * 275.23525 * 3 2 1 5 5 H 1.48500 * 109.46811 * 35.22800 * 3 2 1 6 6 H 1.48495 * 109.47235 * 155.23208 * 3 2 1 7 7 C 1.39100 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00165 * 353.89858 * 7 2 1 9 9 N 1.36795 * 120.00047 * 173.89265 * 7 2 1 10 10 C 1.34773 * 119.99960 * 308.07562 * 9 7 2 11 11 O 1.21575 * 120.00055 * 4.73242 * 10 9 7 12 12 C 1.47917 * 119.99769 * 184.73911 * 10 9 7 13 13 N 1.32875 * 119.73876 * 4.95618 * 12 10 9 14 14 C 1.31571 * 121.62551 * 179.71302 * 13 12 10 15 15 Cl 1.73597 * 119.54523 * 180.31030 * 14 13 12 16 16 C 1.38805 * 120.91035 * 0.56753 * 14 13 12 17 17 C 1.38498 * 119.37761 * 359.72137 * 16 14 13 18 18 C 1.38784 * 118.50651 * 0.02562 * 17 16 14 19 19 Cl 1.73599 * 120.47087 * 179.97438 * 18 17 16 20 20 C 1.46501 * 119.99481 * 128.07142 * 9 7 2 21 21 C 1.54967 * 110.91973 * 252.91150 * 20 9 7 22 22 C 1.54267 * 104.15851 * 156.30303 * 21 20 9 23 23 C 1.53874 * 106.63984 * 336.44238 * 22 21 20 24 24 C 1.54269 * 106.59839 * 359.97438 * 23 22 21 25 25 H 0.97001 * 119.99875 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.30705 * 179.74553 * 16 14 13 27 27 H 1.08006 * 120.73974 * 179.97438 * 17 16 14 28 28 H 1.09005 * 110.66924 * 129.61311 * 20 9 7 29 29 H 1.09000 * 110.47930 * 37.64935 * 21 20 9 30 30 H 1.09003 * 110.53200 * 274.97845 * 21 20 9 31 31 H 1.08999 * 110.03358 * 217.13715 * 22 21 20 32 32 H 1.08997 * 110.03718 * 95.75164 * 22 21 20 33 33 H 1.09001 * 110.03208 * 119.26220 * 23 22 21 34 34 H 1.08995 * 110.03762 * 240.64696 * 23 22 21 35 35 H 1.08995 * 110.49209 * 142.28995 * 24 23 22 36 36 H 1.09004 * 110.47973 * 264.79682 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 2.3842 2.1102 -1.3943 5 1 1.5044 2.6182 0.8076 6 1 3.5958 1.4108 0.5865 7 6 2.0088 -1.2046 0.0005 8 1 1.4734 -2.1372 0.1004 9 7 3.3709 -1.2081 -0.1255 10 6 3.9555 -0.5403 -1.1398 11 8 3.2802 0.1353 -1.8919 12 6 5.4186 -0.6295 -1.3379 13 7 6.1384 -1.4458 -0.5756 14 6 7.4409 -1.5584 -0.7235 15 17 8.3274 -2.6477 0.2969 16 6 8.1168 -0.8142 -1.6806 17 6 7.4062 0.0536 -2.4931 18 6 6.0326 0.1487 -2.3191 19 17 5.0920 1.2206 -3.3090 20 6 4.1941 -1.9376 0.8422 21 6 4.9321 -0.9587 1.7901 22 6 5.2218 -1.8000 3.0503 23 6 4.1886 -2.9402 3.0660 24 6 3.3058 -2.7522 1.8150 25 1 -0.4850 0.8401 -0.0004 26 1 9.1868 -0.9112 -1.7909 27 1 7.9099 0.6435 -3.2447 28 1 4.9039 -2.5878 0.3306 29 1 4.2925 -0.1110 2.0361 30 1 5.8629 -0.6168 1.3374 31 1 5.1125 -1.1848 3.9433 32 1 6.2303 -2.2107 3.0013 33 1 4.6956 -3.9042 3.0238 34 1 3.5784 -2.8787 3.9670 35 1 3.0500 -3.7182 1.3798 36 1 2.4021 -2.1966 2.0659 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078207581.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:30 Heat of formation + Delta-G solvation = 5.228933 kcal Electronic energy + Delta-G solvation = -24724.903966 eV Core-core repulsion = 21068.480542 eV Total energy + Delta-G solvation = -3656.423423 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.06197 -40.29456 -38.68056 -37.81989 -37.46873 -35.60901 -34.32821 -33.58442 -32.08725 -29.60082 -28.57192 -27.41907 -25.28373 -24.52684 -22.46265 -21.29887 -20.89481 -19.55393 -18.40084 -18.20235 -17.60772 -17.18305 -16.86095 -16.51891 -16.17316 -15.67819 -15.40231 -15.16968 -14.80006 -14.47801 -14.23655 -14.01790 -13.74731 -13.57113 -13.21232 -12.87190 -12.56724 -12.54261 -12.37565 -12.27243 -12.16971 -11.94016 -11.82790 -11.75881 -11.57494 -11.24843 -11.00402 -10.89070 -10.74625 -10.05847 -9.97948 -9.42667 -8.42497 -6.27780 -0.70009 -0.22315 0.55051 1.04130 1.19886 1.30022 1.46500 1.78217 2.31452 2.44901 2.59786 2.98902 3.15333 3.49843 3.61066 3.72856 3.85418 3.95649 4.15894 4.24881 4.44094 4.64556 4.68267 4.71561 4.80130 4.82121 4.93102 5.05589 5.08108 5.17371 5.28471 5.45303 5.54553 5.64910 5.70954 5.92980 6.24035 6.70084 6.83842 7.24854 7.77181 8.63626 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010934 B = 0.008255 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.254418 B = 3391.268527 C = 5445.718744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.044 3.956 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.314 1.314 6 H -0.276 1.276 7 C -0.319 4.319 8 H 0.076 0.924 9 N -0.446 5.446 10 C 0.484 3.516 11 O -0.556 6.556 12 C 0.098 3.902 13 N -0.444 5.444 14 C 0.156 3.844 15 Cl -0.003 7.003 16 C -0.107 4.107 17 C -0.047 4.047 18 C -0.061 4.061 19 Cl -0.031 7.031 20 C 0.129 3.871 21 C -0.124 4.124 22 C -0.107 4.107 23 C -0.111 4.111 24 C -0.124 4.124 25 H 0.273 0.727 26 H 0.204 0.796 27 H 0.200 0.800 28 H 0.115 0.885 29 H 0.027 0.973 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.875 -3.280 0.475 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.160 4.160 3 Si 0.801 3.199 4 H -0.200 1.200 5 H -0.245 1.245 6 H -0.202 1.202 7 C -0.447 4.447 8 H 0.093 0.907 9 N -0.166 5.166 10 C 0.274 3.726 11 O -0.440 6.440 12 C -0.040 4.040 13 N -0.159 5.159 14 C -0.011 4.011 15 Cl 0.026 6.974 16 C -0.127 4.127 17 C -0.073 4.073 18 C -0.092 4.092 19 Cl -0.002 7.002 20 C 0.027 3.973 21 C -0.163 4.163 22 C -0.145 4.145 23 C -0.149 4.149 24 C -0.162 4.162 25 H 0.083 0.917 26 H 0.221 0.779 27 H 0.217 0.783 28 H 0.132 0.868 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.875 -3.385 0.767 22.148 hybrid contribution -0.343 1.333 -0.670 1.531 sum 21.531 -2.052 0.097 21.629 Atomic orbital electron populations 1.69713 1.07635 1.28627 1.48698 1.25994 0.95478 1.01763 0.92737 0.85317 0.77984 0.79478 0.77071 1.20023 1.24478 1.20187 1.18618 0.80325 0.93750 1.52001 0.90673 1.43782 1.05809 1.45066 1.21907 1.18504 0.86437 0.85179 0.82498 1.90609 1.63651 1.42725 1.46988 1.20950 0.94227 0.94902 0.93935 1.67629 1.07351 1.17353 1.23519 1.22328 0.89570 0.94970 0.94276 1.98422 1.70834 1.61297 1.66844 1.22474 1.03990 0.93752 0.92497 1.21993 0.89072 0.97095 0.99138 1.22294 0.94626 0.96288 0.96012 1.98427 1.73033 1.61731 1.66972 1.22772 0.92004 0.93711 0.88851 1.22683 0.99176 0.97726 0.96678 1.21986 0.99836 0.96520 0.96154 1.22046 0.96841 0.99232 0.96776 1.22541 0.98742 0.99033 0.95880 0.91717 0.77858 0.78327 0.86772 0.95381 0.91727 0.91523 0.89878 0.89934 0.91337 0.92252 0.92599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.39 13.95 21.69 0.30 -57.08 16 2 C 0.04 2.70 5.17 84.97 0.44 3.14 16 3 Si 0.97 53.48 24.43 68.60 1.68 55.15 16 4 H -0.27 -15.72 6.55 99.48 0.65 -15.07 16 5 H -0.31 -16.93 7.11 99.48 0.71 -16.22 16 6 H -0.28 -14.72 6.15 99.48 0.61 -14.11 16 7 C -0.32 -18.51 7.72 84.13 0.65 -17.86 16 8 H 0.08 4.63 7.58 -2.91 -0.02 4.61 16 9 N -0.45 -22.33 2.20 -609.50 -1.34 -23.67 16 10 C 0.48 23.84 5.61 86.81 0.49 24.32 16 11 O -0.56 -30.62 9.51 -3.95 -0.04 -30.66 16 12 C 0.10 3.73 6.41 41.85 0.27 4.00 16 13 N -0.44 -14.22 4.11 -175.82 -0.72 -14.94 16 14 C 0.16 3.57 7.26 84.87 0.62 4.18 16 15 Cl 0.00 -0.05 29.10 -2.72 -0.08 -0.13 16 16 C -0.11 -1.69 9.88 22.47 0.22 -1.47 16 17 C -0.05 -0.90 9.97 22.46 0.22 -0.68 16 18 C -0.06 -1.94 6.37 22.70 0.14 -1.80 16 19 Cl -0.03 -1.10 26.05 -2.72 -0.07 -1.17 16 20 C 0.13 5.18 2.63 46.31 0.12 5.31 16 21 C -0.12 -4.52 5.81 31.70 0.18 -4.33 16 22 C -0.11 -2.95 6.80 31.32 0.21 -2.73 16 23 C -0.11 -3.10 6.80 31.32 0.21 -2.88 16 24 C -0.12 -4.66 5.47 31.67 0.17 -4.49 16 25 H 0.27 16.35 8.31 -92.71 -0.77 15.58 16 26 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 27 H 0.20 2.10 8.06 -2.91 -0.02 2.07 16 28 H 0.11 4.31 5.86 -2.38 -0.01 4.29 16 29 H 0.03 1.19 7.44 -2.39 -0.02 1.18 16 30 H 0.06 2.24 6.11 -2.39 -0.01 2.23 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.06 2.51 6.68 -2.38 -0.02 2.49 16 Total: -1.00 -74.84 313.86 4.65 -70.19 By element: Atomic # 1 Polarization: -3.37 SS G_CDS: 0.97 Total: -2.40 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 3.96 Total: 4.71 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -1.76 Total: -95.70 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.04 Total: -30.66 kcal Atomic # 14 Polarization: 53.48 SS G_CDS: 1.68 Total: 55.15 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.15 Total: -1.30 kcal Total: -74.84 4.65 -70.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078207581.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.419 kcal (2) G-P(sol) polarization free energy of solvation -74.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds