Wall clock time and date at job start Tue Mar 31 2020 15:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00355 * 2 1 4 4 H 1.48508 * 109.47212 * 270.00188 * 3 2 1 5 5 H 1.48507 * 109.47269 * 29.99911 * 3 2 1 6 6 H 1.48501 * 109.47565 * 150.00294 * 3 2 1 7 7 C 1.37884 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99790 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99952 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46905 * 180.02562 * 9 7 2 11 11 S 1.81003 * 109.47064 * 179.97438 * 10 9 7 12 12 C 1.76196 * 99.99897 * 179.97438 * 11 10 9 13 13 N 1.32753 * 120.91883 * 0.02569 * 12 11 10 14 14 C 1.32297 * 121.48292 * 179.97438 * 13 12 11 15 15 C 1.50695 * 118.51295 * 180.02562 * 14 13 12 16 16 F 1.39902 * 109.47000 * 14.99566 * 15 14 13 17 17 F 1.39895 * 109.47623 * 134.99674 * 15 14 13 18 18 F 1.39904 * 109.47047 * 255.00099 * 15 14 13 19 19 N 1.31223 * 122.98030 * 359.97438 * 14 13 12 20 20 C 1.34147 * 120.47579 * 359.73881 * 19 14 13 21 21 C 1.40139 * 121.97637 * 179.65762 * 20 19 14 22 22 C 1.36330 * 119.58146 * 180.27999 * 21 20 19 23 23 C 1.39202 * 121.02630 * 0.29645 * 22 21 20 24 24 C 1.36415 * 120.88956 * 0.02562 * 23 22 21 25 25 C 1.39890 * 119.50368 * 359.97401 * 24 23 22 26 26 H 0.96999 * 119.99765 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47518 * 60.00093 * 9 7 2 28 28 H 1.09001 * 109.46616 * 299.99332 * 9 7 2 29 29 H 1.09002 * 109.47450 * 59.99630 * 10 9 7 30 30 H 1.08996 * 109.46881 * 299.99868 * 10 9 7 31 31 H 1.08002 * 120.21257 * 0.55930 * 21 20 19 32 32 H 1.07996 * 119.49276 * 180.27935 * 22 21 20 33 33 H 1.07991 * 119.55868 * 179.97438 * 23 22 21 34 34 H 1.08000 * 120.24671 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 16 1.3400 -5.2297 -0.0021 12 6 2.6898 -6.3622 -0.0025 13 7 3.9444 -5.9283 -0.0017 14 6 4.9661 -6.7687 -0.0015 15 6 6.3628 -6.2030 0.0000 16 9 6.3165 -4.8472 0.3421 17 9 7.1445 -6.8928 0.9328 18 9 6.9242 -6.3435 -1.2738 19 7 4.8186 -8.0726 -0.0015 20 6 3.5933 -8.6186 0.0036 21 6 3.3992 -10.0065 -0.0033 22 6 2.1318 -10.5089 -0.0035 23 6 1.0253 -9.6643 -0.0031 24 6 1.1788 -8.3088 -0.0031 25 6 2.4661 -7.7613 -0.0028 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5564 -0.8919 28 1 0.6240 -2.5574 0.8881 29 1 2.8712 -3.6048 0.8890 30 1 2.8724 -3.6040 -0.8909 31 1 4.2483 -10.6740 -0.0039 32 1 1.9840 -11.5786 -0.0043 33 1 0.0319 -10.0878 -0.0037 34 1 0.3130 -7.6633 -0.0032 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078929673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:38 Heat of formation + Delta-G solvation = -91.818137 kcal Electronic energy + Delta-G solvation = -24544.344946 eV Core-core repulsion = 20346.333061 eV Total energy + Delta-G solvation = -4198.011885 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.055 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.19634 -47.74261 -47.64909 -41.54832 -38.10146 -34.50519 -33.83219 -32.12829 -31.20314 -30.80267 -27.38747 -25.58013 -25.21415 -23.46610 -22.82632 -21.24556 -19.60657 -19.17845 -18.63978 -17.84975 -17.61140 -16.89597 -16.60571 -15.65087 -15.48085 -15.01307 -14.56749 -14.52153 -14.47988 -14.43347 -14.09857 -13.91253 -13.80531 -13.79264 -13.67644 -12.90600 -12.79656 -12.67898 -12.19896 -12.03857 -11.82896 -11.80310 -11.23258 -11.06273 -10.69496 -10.36579 -10.34522 -9.77429 -9.72548 -9.55685 -9.23381 -9.03205 -8.49377 -7.68517 -6.13774 -4.18046 -0.28010 0.27782 1.34956 1.45634 2.11306 2.43195 2.51115 3.27423 3.29828 3.33865 3.38360 3.55387 3.56175 4.11151 4.22175 4.27631 4.36038 4.38004 4.54943 4.75022 4.86108 4.98063 5.22858 5.29829 5.54343 5.75579 5.82373 5.87854 5.99951 6.08536 6.25406 6.56710 6.57820 7.39013 7.44442 7.52680 7.81926 8.17379 8.86552 9.46884 10.97134 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.003864 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.900684 B = 7245.221758 C = 9333.020162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.034 3.966 10 C -0.086 4.086 11 S -0.014 6.014 12 C 0.208 3.792 13 N -0.507 5.507 14 C 0.265 3.735 15 C 0.547 3.453 16 F -0.151 7.151 17 F -0.163 7.163 18 F -0.165 7.165 19 N -0.483 5.483 20 C 0.168 3.832 21 C -0.098 4.098 22 C -0.077 4.077 23 C -0.114 4.114 24 C -0.067 4.067 25 C -0.132 4.132 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.494 -21.273 0.040 21.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.005 4.005 10 C -0.233 4.233 11 S 0.230 5.770 12 C -0.059 4.059 13 N -0.227 5.227 14 C -0.012 4.012 15 C 0.490 3.510 16 F -0.132 7.132 17 F -0.144 7.144 18 F -0.147 7.147 19 N -0.201 5.201 20 C 0.041 3.959 21 C -0.117 4.117 22 C -0.098 4.098 23 C -0.133 4.133 24 C -0.088 4.088 25 C -0.142 4.142 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.162 0.838 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.108 -20.980 0.042 21.378 hybrid contribution 1.222 0.919 -0.020 1.529 sum 5.330 -20.061 0.023 20.757 Atomic orbital electron populations 1.69955 1.06102 1.27055 1.49952 1.24998 0.94915 0.99395 0.94834 0.86488 0.79854 0.82818 0.78286 1.20475 1.21091 1.19632 1.21049 0.93268 0.89772 1.51897 0.92016 1.19018 0.93322 0.89606 0.98566 1.24158 1.01980 0.90991 1.06209 1.85939 1.05667 1.00860 1.84580 1.24590 0.96090 0.94917 0.90262 1.68394 0.98113 1.38129 1.18113 1.22380 0.93683 0.87329 0.97782 1.17147 0.83153 0.76191 0.74490 1.93300 1.96407 1.31616 1.91858 1.93236 1.76048 1.79471 1.65635 1.93244 1.86206 1.95567 1.39647 1.68302 1.25282 1.11690 1.14812 1.18737 0.86776 0.94554 0.95834 1.20731 0.98415 0.91845 1.00708 1.21101 0.91855 1.00774 0.96076 1.21073 0.99717 0.93079 0.99436 1.21028 0.95443 0.96002 0.96329 1.19152 0.96273 0.93246 1.05506 0.92696 0.95401 0.95389 0.89198 0.89256 0.83847 0.84429 0.84488 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -14.14 9.11 -34.44 -0.31 -14.45 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.03 0.83 4.98 -27.88 -0.14 0.69 16 10 C -0.09 -1.72 4.83 37.16 0.18 -1.54 16 11 S -0.01 -0.23 20.70 -107.50 -2.23 -2.46 16 12 C 0.21 3.35 7.08 -15.84 -0.11 3.24 16 13 N -0.51 -8.83 8.67 -9.09 -0.08 -8.91 16 14 C 0.26 4.33 7.08 -157.25 -1.11 3.22 16 15 C 0.55 8.32 3.48 36.00 0.13 8.45 16 16 F -0.15 -2.44 16.84 2.25 0.04 -2.40 16 17 F -0.16 -2.33 17.18 2.25 0.04 -2.29 16 18 F -0.17 -2.44 17.30 2.25 0.04 -2.40 16 19 N -0.48 -7.41 10.18 -8.82 -0.09 -7.50 16 20 C 0.17 2.29 6.61 -84.85 -0.56 1.73 16 21 C -0.10 -0.96 10.01 -39.56 -0.40 -1.35 16 22 C -0.08 -0.56 9.95 -39.91 -0.40 -0.96 16 23 C -0.11 -0.89 9.96 -39.88 -0.40 -1.28 16 24 C -0.07 -0.71 9.45 -39.62 -0.37 -1.09 16 25 C -0.13 -1.82 5.76 -106.68 -0.61 -2.44 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.84 8.14 -51.91 -0.42 1.41 16 30 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 31 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 33 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.14 1.40 7.02 -52.49 -0.37 1.03 16 LS Contribution 328.58 15.07 4.95 4.95 Total: -1.00 -30.06 328.58 -8.69 -38.75 By element: Atomic # 1 Polarization: -1.77 SS G_CDS: -2.87 Total: -4.64 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -4.21 Total: -4.20 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.57 Total: -41.44 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.12 Total: -7.09 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -2.23 Total: -2.46 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.06 -8.69 -38.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078929673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.064 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds