Wall clock time and date at job start Tue Mar 31 2020 15:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00355 * 2 1 4 4 H 1.48508 * 109.47212 * 270.00188 * 3 2 1 5 5 H 1.48507 * 109.47269 * 29.99911 * 3 2 1 6 6 H 1.48501 * 109.47565 * 150.00294 * 3 2 1 7 7 C 1.37884 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99790 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99952 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46905 * 180.02562 * 9 7 2 11 11 S 1.81003 * 109.47064 * 179.97438 * 10 9 7 12 12 C 1.76196 * 99.99897 * 179.97438 * 11 10 9 13 13 N 1.32753 * 120.91883 * 0.02569 * 12 11 10 14 14 C 1.32297 * 121.48292 * 179.97438 * 13 12 11 15 15 C 1.50695 * 118.51295 * 180.02562 * 14 13 12 16 16 F 1.39902 * 109.47000 * 14.99566 * 15 14 13 17 17 F 1.39895 * 109.47623 * 134.99674 * 15 14 13 18 18 F 1.39904 * 109.47047 * 255.00099 * 15 14 13 19 19 N 1.31223 * 122.98030 * 359.97438 * 14 13 12 20 20 C 1.34147 * 120.47579 * 359.73881 * 19 14 13 21 21 C 1.40139 * 121.97637 * 179.65762 * 20 19 14 22 22 C 1.36330 * 119.58146 * 180.27999 * 21 20 19 23 23 C 1.39202 * 121.02630 * 0.29645 * 22 21 20 24 24 C 1.36415 * 120.88956 * 0.02562 * 23 22 21 25 25 C 1.39890 * 119.50368 * 359.97401 * 24 23 22 26 26 H 0.96999 * 119.99765 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47518 * 60.00093 * 9 7 2 28 28 H 1.09001 * 109.46616 * 299.99332 * 9 7 2 29 29 H 1.09002 * 109.47450 * 59.99630 * 10 9 7 30 30 H 1.08996 * 109.46881 * 299.99868 * 10 9 7 31 31 H 1.08002 * 120.21257 * 0.55930 * 21 20 19 32 32 H 1.07996 * 119.49276 * 180.27935 * 22 21 20 33 33 H 1.07991 * 119.55868 * 179.97438 * 23 22 21 34 34 H 1.08000 * 120.24671 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 16 1.3400 -5.2297 -0.0021 12 6 2.6898 -6.3622 -0.0025 13 7 3.9444 -5.9283 -0.0017 14 6 4.9661 -6.7687 -0.0015 15 6 6.3628 -6.2030 0.0000 16 9 6.3165 -4.8472 0.3421 17 9 7.1445 -6.8928 0.9328 18 9 6.9242 -6.3435 -1.2738 19 7 4.8186 -8.0726 -0.0015 20 6 3.5933 -8.6186 0.0036 21 6 3.3992 -10.0065 -0.0033 22 6 2.1318 -10.5089 -0.0035 23 6 1.0253 -9.6643 -0.0031 24 6 1.1788 -8.3088 -0.0031 25 6 2.4661 -7.7613 -0.0028 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5564 -0.8919 28 1 0.6240 -2.5574 0.8881 29 1 2.8712 -3.6048 0.8890 30 1 2.8724 -3.6040 -0.8909 31 1 4.2483 -10.6740 -0.0039 32 1 1.9840 -11.5786 -0.0043 33 1 0.0319 -10.0878 -0.0037 34 1 0.3130 -7.6633 -0.0032 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078929673.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:38 Heat of formation + Delta-G solvation = -107.804856 kcal Electronic energy + Delta-G solvation = -24545.038182 eV Core-core repulsion = 20346.333061 eV Total energy + Delta-G solvation = -4198.705121 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.055 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.39857 -48.92308 -48.87807 -42.57294 -38.99140 -35.85407 -35.57400 -33.16579 -32.91914 -31.85751 -28.44531 -27.43058 -26.39172 -24.59362 -23.77248 -22.99257 -20.68636 -20.30142 -19.83719 -18.96925 -18.71213 -18.55614 -18.03364 -16.66226 -16.63325 -16.53213 -15.78875 -15.75157 -15.63123 -15.57692 -15.52067 -15.30169 -15.02545 -15.01613 -14.98205 -14.19743 -13.94391 -13.68321 -13.60232 -13.58811 -13.10573 -12.81771 -12.80187 -12.53098 -12.28810 -12.20314 -11.86934 -11.73420 -11.20474 -10.69333 -10.61930 -10.60176 -9.92640 -8.92054 -8.25682 -6.37346 -1.29530 -0.68634 0.09358 0.56115 0.85095 1.11972 1.41281 1.41362 1.49265 1.53244 2.12259 2.39653 2.43429 2.64781 3.08509 3.08983 3.10451 3.26459 3.33089 3.78484 3.86158 4.09852 4.15768 4.24350 4.31410 4.55120 4.78906 4.79921 4.95992 5.07048 5.27629 5.33771 5.41978 5.42366 5.69884 5.70885 6.09672 6.39922 6.74728 7.31864 8.85786 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.003864 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.900684 B = 7245.221758 C = 9333.020162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.042 3.958 10 C -0.080 4.080 11 S 0.012 5.988 12 C 0.188 3.812 13 N -0.533 5.533 14 C 0.237 3.763 15 C 0.551 3.449 16 F -0.160 7.160 17 F -0.158 7.158 18 F -0.164 7.164 19 N -0.480 5.480 20 C 0.140 3.860 21 C -0.102 4.102 22 C -0.055 4.055 23 C -0.084 4.084 24 C -0.091 4.091 25 C -0.137 4.137 26 H 0.267 0.733 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.162 0.838 32 H 0.187 0.813 33 H 0.180 0.820 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.952 -24.347 0.024 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.079 0.921 9 C 0.003 3.997 10 C -0.228 4.228 11 S 0.255 5.745 12 C -0.079 4.079 13 N -0.254 5.254 14 C -0.039 4.039 15 C 0.494 3.506 16 F -0.142 7.142 17 F -0.139 7.139 18 F -0.145 7.145 19 N -0.197 5.197 20 C 0.012 3.988 21 C -0.121 4.121 22 C -0.075 4.075 23 C -0.102 4.102 24 C -0.112 4.112 25 C -0.147 4.147 26 H 0.076 0.924 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.180 0.820 32 H 0.204 0.796 33 H 0.197 0.803 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.588 -24.061 0.025 24.327 hybrid contribution 1.312 1.514 -0.015 2.003 sum 4.899 -22.548 0.010 23.074 Atomic orbital electron populations 1.70061 1.07574 1.28122 1.50793 1.25871 0.95775 1.03025 0.94293 0.85451 0.78642 0.78416 0.78600 1.19685 1.20380 1.19056 1.21466 0.93554 0.91423 1.51807 0.92140 1.18769 0.93444 0.90849 0.96611 1.23661 1.01032 0.92755 1.05387 1.85541 1.04798 0.98018 1.86133 1.24617 0.95455 0.95995 0.91829 1.68265 0.98936 1.39235 1.18934 1.22368 0.93572 0.87792 1.00167 1.17070 0.83185 0.75754 0.74542 1.93272 1.96474 1.32451 1.91968 1.93234 1.75920 1.79296 1.65483 1.93236 1.86197 1.95526 1.39590 1.68294 1.26599 1.11106 1.13730 1.19309 0.86033 0.96266 0.97166 1.21107 1.00556 0.90082 1.00368 1.21690 0.90259 1.03126 0.92455 1.21656 1.02032 0.91661 0.94879 1.21220 0.94106 0.97756 0.98088 1.19348 0.97935 0.91943 1.05443 0.92415 0.97231 0.97226 0.90071 0.90091 0.82010 0.79610 0.80276 0.83362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.75 13.29 21.45 0.28 -54.46 16 2 C 0.01 0.54 5.46 84.66 0.46 1.00 16 3 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.54 -30.59 9.11 25.60 0.23 -30.35 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.04 2.17 4.98 29.85 0.15 2.32 16 10 C -0.08 -3.40 4.83 71.98 0.35 -3.06 16 11 S 0.01 0.41 20.70 -56.49 -1.17 -0.76 16 12 C 0.19 6.17 7.08 85.40 0.60 6.78 16 13 N -0.53 -19.33 8.67 -182.67 -1.58 -20.92 16 14 C 0.24 7.97 7.08 138.77 0.98 8.95 16 15 C 0.55 17.33 3.48 71.23 0.25 17.58 16 16 F -0.16 -5.45 16.84 44.97 0.76 -4.69 16 17 F -0.16 -4.61 17.18 44.97 0.77 -3.84 16 18 F -0.16 -4.96 17.30 44.97 0.78 -4.18 16 19 N -0.48 -14.60 10.18 -181.81 -1.85 -16.45 16 20 C 0.14 3.60 6.61 40.09 0.27 3.86 16 21 C -0.10 -1.61 10.01 22.29 0.22 -1.39 16 22 C -0.05 -0.47 9.95 22.06 0.22 -0.26 16 23 C -0.08 -0.85 9.96 22.08 0.22 -0.63 16 24 C -0.09 -1.69 9.45 22.24 0.21 -1.48 16 25 C -0.14 -3.65 5.76 -21.20 -0.12 -3.77 16 26 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 30 H 0.08 3.51 8.14 -2.40 -0.02 3.49 16 31 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.19 -0.02 8.06 -2.91 -0.02 -0.04 16 33 H 0.18 0.43 8.06 -2.92 -0.02 0.41 16 34 H 0.15 2.57 7.02 -2.91 -0.02 2.55 16 Total: -1.00 -68.80 328.58 5.22 -63.58 By element: Atomic # 1 Polarization: -4.96 SS G_CDS: 1.16 Total: -3.80 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 4.04 Total: -0.45 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -3.15 Total: -91.83 kcal Atomic # 9 Polarization: -15.02 SS G_CDS: 2.31 Total: -12.71 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -1.17 Total: -0.76 kcal Total: -68.80 5.22 -63.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078929673.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.222 kcal (2) G-P(sol) polarization free energy of solvation -68.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds