Wall clock time and date at job start Tue Mar 31 2020 15:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36614 * 122.95270 * 323.36967 * 3 2 1 5 5 S 1.70595 * 110.54636 * 180.26430 * 4 3 2 6 6 C 1.75700 * 91.84559 * 359.70678 * 5 4 3 7 7 C 1.46710 * 125.06559 * 180.02562 * 6 5 4 8 8 O 1.21688 * 120.00093 * 180.25118 * 7 6 5 9 9 N 1.34782 * 120.00128 * 0.24918 * 7 6 5 10 10 C 1.46494 * 120.00269 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47320 * 180.02562 * 10 9 7 12 12 C 1.38300 * 119.93194 * 269.72567 * 11 10 9 13 13 C 1.38098 * 120.07124 * 179.72694 * 12 11 10 14 14 C 1.38883 * 119.92838 * 0.56407 * 13 12 11 15 15 O 1.35747 * 120.06701 * 179.68619 * 14 13 12 16 16 C 1.34840 * 116.99847 * 174.49060 * 15 14 13 17 17 H 1.07993 * 119.99726 * 5.04933 * 16 15 14 18 18 C 1.38647 * 119.99975 * 185.05723 * 16 15 14 19 19 N 1.31562 * 120.00102 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00000 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47216 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47312 * 120.00029 * 20 18 16 23 23 H 1.48506 * 109.47080 * 239.99996 * 20 18 16 24 24 C 1.38881 * 119.86010 * 359.70718 * 14 13 12 25 25 C 1.38097 * 119.93228 * 0.02562 * 24 14 13 26 26 C 1.34941 * 109.86896 * 0.29549 * 6 5 4 27 27 H 1.08000 * 124.72778 * 0.02562 * 4 3 2 28 28 H 0.97001 * 119.99736 * 0.02562 * 9 7 6 29 29 H 1.09008 * 109.46484 * 299.99701 * 10 9 7 30 30 H 1.08997 * 109.47786 * 59.99487 * 10 9 7 31 31 H 1.08000 * 119.95944 * 359.97438 * 12 11 10 32 32 H 1.08000 * 120.03870 * 180.27496 * 13 12 11 33 33 H 0.96995 * 120.00096 * 180.02562 * 19 18 16 34 34 H 1.08007 * 120.03145 * 179.97438 * 24 14 13 35 35 H 1.08004 * 119.96212 * 180.02562 * 25 24 14 36 36 H 1.07997 * 123.17977 * 179.75939 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3116 -0.9190 0.6840 5 16 4.9775 -0.6197 0.4712 6 6 4.6549 0.7627 -0.5641 7 6 5.6806 1.6059 -1.1882 8 8 5.3524 2.5463 -1.8873 9 7 6.9863 1.3390 -0.9872 10 6 8.0105 2.1813 -1.6099 11 6 9.3776 1.6732 -1.2306 12 6 10.0042 2.1586 -0.0974 13 6 11.2546 1.6909 0.2560 14 6 11.8878 0.7406 -0.5344 15 8 13.1196 0.2836 -0.1932 16 6 13.6284 -0.7191 -0.9375 17 1 13.0969 -1.0664 -1.8110 18 6 14.8339 -1.3041 -0.5813 19 7 15.4816 -0.8807 0.4827 20 14 15.5384 -2.6935 -1.6120 21 1 14.6240 -2.9812 -2.7462 22 1 16.8690 -2.2949 -2.1370 23 1 15.6819 -3.9096 -0.7717 24 6 11.2583 0.2592 -1.6749 25 6 10.0055 0.7269 -2.0199 26 6 3.3232 0.9369 -0.6948 27 1 2.9018 -1.7212 1.2798 28 1 7.2479 0.5892 -0.4302 29 1 7.8986 2.1478 -2.6938 30 1 7.8955 3.2086 -1.2645 31 1 9.5134 2.9014 0.5141 32 1 11.7416 2.0671 1.1436 33 1 16.3251 -1.2897 0.7317 34 1 11.7483 -0.4795 -2.2919 35 1 9.5153 0.3526 -2.9065 36 1 2.8858 1.7296 -1.2837 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084292919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:10 Heat of formation + Delta-G solvation = 23.610111 kcal Electronic energy + Delta-G solvation = -22654.466734 eV Core-core repulsion = 19003.316934 eV Total energy + Delta-G solvation = -3651.149800 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.09628 -39.20678 -38.58107 -36.95056 -36.24957 -34.59716 -32.44686 -31.10627 -30.34566 -29.70351 -26.46131 -25.81549 -24.93004 -22.70516 -22.12475 -20.78268 -20.25903 -19.15008 -18.13937 -17.62238 -17.17581 -16.45836 -16.09712 -15.57622 -14.83070 -14.73796 -14.53055 -14.39530 -14.16595 -13.97230 -13.83363 -13.77511 -13.48496 -13.07155 -13.02188 -12.85623 -12.72282 -12.65368 -12.17455 -11.74631 -11.59085 -11.46886 -11.05586 -10.86871 -10.75470 -10.52273 -10.30939 -9.55515 -9.48688 -9.21488 -9.08012 -8.97263 -8.35891 -7.40479 -6.58553 -4.17496 -0.13139 0.81638 1.17682 1.19797 1.95712 2.06213 2.28780 2.81492 3.01359 3.05905 3.10467 3.11410 3.12371 3.63747 3.85586 4.28720 4.42351 4.60658 4.70357 4.96029 5.06478 5.13658 5.22110 5.32805 5.46643 5.56191 5.58316 5.72064 5.81477 6.05715 6.26087 6.27732 6.52675 6.73175 6.88708 7.06612 7.07307 7.19431 7.28859 7.33339 7.64416 7.86075 7.95165 8.86836 9.54227 10.58818 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020730 B = 0.002150 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.380738 B =13018.708416 C =13699.791601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.275 3.725 3 C -0.057 4.057 4 C -0.190 4.190 5 S 0.283 5.717 6 C -0.262 4.262 7 C 0.585 3.415 8 O -0.530 6.530 9 N -0.715 5.715 10 C 0.180 3.820 11 C -0.220 4.220 12 C -0.053 4.053 13 C -0.195 4.195 14 C 0.161 3.839 15 O -0.172 6.172 16 C -0.393 4.393 17 H 0.095 0.905 18 C 0.040 3.960 19 N -0.858 5.858 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.237 4.237 25 C -0.049 4.049 26 C -0.028 4.028 27 H 0.183 0.817 28 H 0.399 0.601 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.271 0.729 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.822 -0.890 0.248 17.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.043 4.043 3 C -0.075 4.075 4 C -0.333 4.333 5 S 0.551 5.449 6 C -0.382 4.382 7 C 0.370 3.630 8 O -0.408 6.408 9 N -0.366 5.366 10 C 0.058 3.942 11 C -0.221 4.221 12 C -0.072 4.072 13 C -0.215 4.215 14 C 0.106 3.894 15 O -0.074 6.074 16 C -0.469 4.469 17 H 0.112 0.888 18 C -0.165 4.165 19 N -0.492 5.492 20 Si 0.767 3.233 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.256 4.256 25 C -0.068 4.068 26 C -0.060 4.060 27 H 0.200 0.800 28 H 0.234 0.766 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.081 0.919 34 H 0.146 0.854 35 H 0.127 0.873 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.023 -0.891 0.567 18.053 hybrid contribution -0.414 -0.519 -0.710 0.972 sum -18.437 -1.410 -0.143 18.491 Atomic orbital electron populations 1.81288 1.11715 1.07694 1.08351 1.24969 0.91732 0.93850 0.93722 1.15062 0.85981 1.00264 1.06183 1.26057 0.99724 1.03554 1.03922 1.83438 1.00651 1.21004 1.39808 1.24299 0.97965 1.05206 1.10745 1.16931 0.81807 0.83603 0.80667 1.90847 1.81484 1.29629 1.38838 1.46271 1.04982 1.33523 1.51825 1.20061 0.83340 0.93360 0.97404 1.19169 0.96788 1.05688 1.00468 1.20539 0.93895 0.97633 0.95140 1.20223 0.96473 1.02598 1.02165 1.19452 0.85604 0.92227 0.92077 1.83981 1.24405 1.46684 1.52373 1.21411 1.05421 1.11362 1.08742 0.88801 1.25331 0.95711 0.98595 0.96850 1.70043 1.15297 1.40264 1.23577 0.85624 0.79127 0.79504 0.79062 1.19010 1.20048 1.20039 1.21166 0.97356 1.06737 1.00389 1.20651 0.94108 0.94590 0.97476 1.20262 0.90992 0.97963 0.96816 0.79966 0.76599 0.91085 0.91032 0.86872 0.86319 0.91870 0.85361 0.87311 0.81919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.72 18.54 41.84 0.78 -3.94 16 2 C 0.27 2.48 15.55 -22.47 -0.35 2.13 16 3 C -0.06 -0.41 5.67 -108.31 -0.61 -1.02 16 4 C -0.19 -0.98 10.82 30.15 0.33 -0.65 16 5 S 0.28 1.59 22.09 -107.50 -2.37 -0.79 16 6 C -0.26 -2.25 6.38 -37.33 -0.24 -2.49 16 7 C 0.59 6.73 7.78 -12.84 -0.10 6.63 16 8 O -0.53 -7.88 16.79 5.20 0.09 -7.79 16 9 N -0.72 -7.76 5.54 -62.79 -0.35 -8.10 16 10 C 0.18 2.22 5.80 -5.20 -0.03 2.18 16 11 C -0.22 -3.18 5.25 -104.58 -0.55 -3.73 16 12 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 13 C -0.20 -3.68 9.99 -39.39 -0.39 -4.07 16 14 C 0.16 3.55 6.65 -39.10 -0.26 3.29 16 15 O -0.17 -4.59 9.76 0.03 0.00 -4.59 16 16 C -0.39 -10.31 9.49 30.88 0.29 -10.02 16 17 H 0.09 2.26 5.20 -52.49 -0.27 1.99 16 18 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 19 N -0.86 -23.94 13.67 55.48 0.76 -23.19 16 20 Si 0.94 19.38 29.55 -169.99 -5.02 14.36 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 C -0.24 -4.61 9.17 -39.40 -0.36 -4.97 16 25 C -0.05 -0.78 9.69 -39.61 -0.38 -1.17 16 26 C -0.03 -0.23 9.72 -40.50 -0.39 -0.62 16 27 H 0.18 0.48 8.06 -52.49 -0.42 0.06 16 28 H 0.40 3.76 7.54 -40.82 -0.31 3.45 16 29 H 0.07 0.88 8.08 -51.92 -0.42 0.46 16 30 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 32 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 33 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.13 2.53 5.64 -52.48 -0.30 2.23 16 35 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.16 1.32 8.03 -52.49 -0.42 0.89 16 LS Contribution 347.53 15.07 5.24 5.24 Total: -1.00 -31.37 347.53 -7.39 -38.75 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -2.96 Total: 4.81 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -3.53 Total: -14.76 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 1.19 Total: -35.23 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.37 Total: -0.79 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.37 -7.39 -38.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084292919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.365 kcal (2) G-P(sol) polarization free energy of solvation -31.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds