Wall clock time and date at job start Tue Mar 31 2020 15:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36614 * 122.95270 * 323.36967 * 3 2 1 5 5 S 1.70595 * 110.54636 * 180.26430 * 4 3 2 6 6 C 1.75700 * 91.84559 * 359.70678 * 5 4 3 7 7 C 1.46710 * 125.06559 * 180.02562 * 6 5 4 8 8 O 1.21688 * 120.00093 * 180.25118 * 7 6 5 9 9 N 1.34782 * 120.00128 * 0.24918 * 7 6 5 10 10 C 1.46494 * 120.00269 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47320 * 180.02562 * 10 9 7 12 12 C 1.38300 * 119.93194 * 269.72567 * 11 10 9 13 13 C 1.38098 * 120.07124 * 179.72694 * 12 11 10 14 14 C 1.38883 * 119.92838 * 0.56407 * 13 12 11 15 15 O 1.35747 * 120.06701 * 179.68619 * 14 13 12 16 16 C 1.34840 * 116.99847 * 174.49060 * 15 14 13 17 17 H 1.07993 * 119.99726 * 5.04933 * 16 15 14 18 18 C 1.38647 * 119.99975 * 185.05723 * 16 15 14 19 19 N 1.31562 * 120.00102 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00000 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47216 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47312 * 120.00029 * 20 18 16 23 23 H 1.48506 * 109.47080 * 239.99996 * 20 18 16 24 24 C 1.38881 * 119.86010 * 359.70718 * 14 13 12 25 25 C 1.38097 * 119.93228 * 0.02562 * 24 14 13 26 26 C 1.34941 * 109.86896 * 0.29549 * 6 5 4 27 27 H 1.08000 * 124.72778 * 0.02562 * 4 3 2 28 28 H 0.97001 * 119.99736 * 0.02562 * 9 7 6 29 29 H 1.09008 * 109.46484 * 299.99701 * 10 9 7 30 30 H 1.08997 * 109.47786 * 59.99487 * 10 9 7 31 31 H 1.08000 * 119.95944 * 359.97438 * 12 11 10 32 32 H 1.08000 * 120.03870 * 180.27496 * 13 12 11 33 33 H 0.96995 * 120.00096 * 180.02562 * 19 18 16 34 34 H 1.08007 * 120.03145 * 179.97438 * 24 14 13 35 35 H 1.08004 * 119.96212 * 180.02562 * 25 24 14 36 36 H 1.07997 * 123.17977 * 179.75939 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3116 -0.9190 0.6840 5 16 4.9775 -0.6197 0.4712 6 6 4.6549 0.7627 -0.5641 7 6 5.6806 1.6059 -1.1882 8 8 5.3524 2.5463 -1.8873 9 7 6.9863 1.3390 -0.9872 10 6 8.0105 2.1813 -1.6099 11 6 9.3776 1.6732 -1.2306 12 6 10.0042 2.1586 -0.0974 13 6 11.2546 1.6909 0.2560 14 6 11.8878 0.7406 -0.5344 15 8 13.1196 0.2836 -0.1932 16 6 13.6284 -0.7191 -0.9375 17 1 13.0969 -1.0664 -1.8110 18 6 14.8339 -1.3041 -0.5813 19 7 15.4816 -0.8807 0.4827 20 14 15.5384 -2.6935 -1.6120 21 1 14.6240 -2.9812 -2.7462 22 1 16.8690 -2.2949 -2.1370 23 1 15.6819 -3.9096 -0.7717 24 6 11.2583 0.2592 -1.6749 25 6 10.0055 0.7269 -2.0199 26 6 3.3232 0.9369 -0.6948 27 1 2.9018 -1.7212 1.2798 28 1 7.2479 0.5892 -0.4302 29 1 7.8986 2.1478 -2.6938 30 1 7.8955 3.2086 -1.2645 31 1 9.5134 2.9014 0.5141 32 1 11.7416 2.0671 1.1436 33 1 16.3251 -1.2897 0.7317 34 1 11.7483 -0.4795 -2.2919 35 1 9.5153 0.3526 -2.9065 36 1 2.8858 1.7296 -1.2837 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084292919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:09 Heat of formation + Delta-G solvation = 3.761834 kcal Electronic energy + Delta-G solvation = -22655.327420 eV Core-core repulsion = 19003.316934 eV Total energy + Delta-G solvation = -3652.010486 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.08111 -40.61022 -39.33773 -38.43019 -36.99965 -35.70692 -34.25859 -32.06771 -31.77182 -30.75006 -27.75181 -26.90477 -26.12684 -23.62286 -23.58957 -22.10078 -21.09604 -19.89407 -19.76901 -18.83676 -18.19174 -17.36766 -16.96654 -16.65815 -16.31211 -16.08272 -15.78889 -15.51213 -15.27131 -15.17194 -14.86358 -14.62103 -14.52403 -14.36253 -14.21680 -13.72339 -13.68858 -13.48152 -13.39881 -13.17995 -13.01419 -12.55967 -12.32551 -12.23302 -12.09336 -12.06080 -11.29312 -11.16418 -10.78851 -10.28287 -9.97323 -9.77147 -9.64283 -8.98628 -8.45998 -6.13865 -0.67659 0.29579 0.54045 0.56206 0.61901 0.63938 1.38551 1.45159 1.55959 1.59087 1.99895 2.16722 2.19535 2.42721 2.86087 3.00358 3.20730 3.51893 3.71645 3.88302 3.98772 4.07043 4.21492 4.22168 4.49208 4.60681 4.61835 4.77756 4.84407 4.93497 4.96941 5.08018 5.17844 5.30524 5.31804 5.56265 5.72942 5.78103 6.04521 6.19564 6.40006 6.45174 6.99314 7.08616 7.78919 8.76912 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020730 B = 0.002150 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.380738 B =13018.708416 C =13699.791601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.299 3.701 3 C -0.076 4.076 4 C -0.164 4.164 5 S 0.340 5.660 6 C -0.292 4.292 7 C 0.589 3.411 8 O -0.569 6.569 9 N -0.710 5.710 10 C 0.184 3.816 11 C -0.185 4.185 12 C -0.042 4.042 13 C -0.205 4.205 14 C 0.123 3.877 15 O -0.230 6.230 16 C -0.410 4.410 17 H 0.105 0.895 18 C -0.022 4.022 19 N -0.919 5.919 20 Si 1.017 2.983 21 H -0.250 1.250 22 H -0.272 1.272 23 H -0.269 1.269 24 C -0.244 4.244 25 C -0.044 4.044 26 C -0.021 4.021 27 H 0.214 0.786 28 H 0.408 0.592 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.149 0.851 32 H 0.115 0.885 33 H 0.272 0.728 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.085 -1.787 -0.270 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.018 4.018 3 C -0.093 4.093 4 C -0.306 4.306 5 S 0.608 5.392 6 C -0.413 4.413 7 C 0.376 3.624 8 O -0.450 6.450 9 N -0.361 5.361 10 C 0.062 3.938 11 C -0.186 4.186 12 C -0.061 4.061 13 C -0.224 4.224 14 C 0.072 3.928 15 O -0.136 6.136 16 C -0.487 4.487 17 H 0.122 0.878 18 C -0.220 4.220 19 N -0.557 5.557 20 Si 0.836 3.164 21 H -0.173 1.173 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.263 4.263 25 C -0.063 4.063 26 C -0.055 4.055 27 H 0.231 0.769 28 H 0.244 0.756 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.167 0.833 32 H 0.133 0.867 33 H 0.081 0.919 34 H 0.138 0.862 35 H 0.159 0.841 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.344 -1.778 0.042 20.421 hybrid contribution -0.062 -0.080 -0.537 0.547 sum -20.406 -1.859 -0.495 20.496 Atomic orbital electron populations 1.81312 1.13104 1.09373 1.10200 1.25155 0.91895 0.92449 0.92292 1.14933 0.84940 1.01452 1.07979 1.26480 0.99609 1.02733 1.01796 1.83335 1.00046 1.18290 1.37495 1.24012 0.97233 1.07078 1.12936 1.17165 0.82058 0.83217 0.79930 1.90831 1.82038 1.31467 1.40662 1.46045 1.04668 1.33580 1.51849 1.19980 0.81987 0.93872 0.98000 1.19472 0.97321 1.03092 0.98696 1.20902 0.92277 0.97411 0.95470 1.20457 0.97732 1.02201 1.01996 1.20015 0.85319 0.93619 0.93824 1.83953 1.27016 1.48428 1.54174 1.21863 1.05936 1.11680 1.09174 0.87784 1.26557 0.95957 1.01320 0.98179 1.70184 1.16292 1.42870 1.26330 0.84546 0.78325 0.75865 0.77626 1.17285 1.19711 1.19424 1.21248 0.98647 1.06806 0.99606 1.20962 0.92633 0.94191 0.98486 1.20248 0.91096 0.97782 0.96342 0.76910 0.75567 0.90494 0.90228 0.83308 0.86720 0.91868 0.86234 0.84132 0.82736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.21 18.54 19.00 0.35 -9.86 16 2 C 0.30 4.93 15.55 88.33 1.37 6.30 16 3 C -0.08 -0.88 5.67 -22.25 -0.13 -1.01 16 4 C -0.16 -1.00 10.82 67.44 0.73 -0.27 16 5 S 0.34 2.44 22.09 -56.49 -1.25 1.19 16 6 C -0.29 -4.23 6.38 23.73 0.15 -4.08 16 7 C 0.59 12.00 7.78 86.46 0.67 12.67 16 8 O -0.57 -15.93 16.79 -4.31 -0.07 -16.00 16 9 N -0.71 -12.83 5.54 -470.79 -2.61 -15.44 16 10 C 0.18 3.80 5.80 85.63 0.50 4.29 16 11 C -0.18 -4.68 5.25 -19.83 -0.10 -4.78 16 12 C -0.04 -1.17 9.69 22.25 0.22 -0.96 16 13 C -0.20 -7.65 9.99 22.39 0.22 -7.43 16 14 C 0.12 5.55 6.65 22.58 0.15 5.70 16 15 O -0.23 -12.95 9.76 -22.81 -0.22 -13.17 16 16 C -0.41 -22.49 9.49 67.92 0.64 -21.85 16 17 H 0.10 5.18 5.20 -2.91 -0.02 5.16 16 18 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 19 N -0.92 -54.19 13.67 21.61 0.30 -53.89 16 20 Si 1.02 40.69 29.55 68.60 2.03 42.71 16 21 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 22 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 23 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 24 C -0.24 -9.36 9.17 22.39 0.21 -9.16 16 25 C -0.04 -1.27 9.69 22.25 0.22 -1.06 16 26 C -0.02 -0.31 9.72 21.67 0.21 -0.10 16 27 H 0.21 0.01 8.06 -2.91 -0.02 -0.01 16 28 H 0.41 6.01 7.54 -92.71 -0.70 5.31 16 29 H 0.08 1.60 8.08 -2.38 -0.02 1.58 16 30 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16 31 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 32 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 33 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 34 H 0.12 4.74 5.64 -2.91 -0.02 4.73 16 35 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 36 H 0.16 2.39 8.03 -2.91 -0.02 2.37 16 Total: -1.00 -74.14 347.53 4.51 -69.63 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.46 Total: 17.30 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 5.52 Total: -22.47 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -1.96 Total: -79.19 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.29 Total: -29.17 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.25 Total: 1.19 kcal Total: -74.14 4.51 -69.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084292919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.391 kcal (2) G-P(sol) polarization free energy of solvation -74.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds