Wall clock time and date at job start Tue Mar 31 2020 14:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99971 * 2 1 4 4 H 1.48500 * 109.46854 * 90.00479 * 3 2 1 5 5 H 1.48497 * 109.46920 * 210.00608 * 3 2 1 6 6 H 1.48500 * 109.46891 * 330.00478 * 3 2 1 7 7 C 1.37873 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00477 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00035 * 179.97438 * 7 2 1 10 10 N 1.46491 * 109.47179 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00076 * 90.00191 * 10 9 7 12 12 C 1.50702 * 109.47012 * 263.92816 * 11 10 9 13 13 C 1.38667 * 120.41973 * 91.84761 * 12 11 10 14 14 C 1.38629 * 118.42439 * 180.02562 * 13 12 11 15 15 C 1.38228 * 119.15650 * 359.97438 * 14 13 12 16 16 N 1.31848 * 120.76528 * 0.02562 * 15 14 13 17 17 C 1.31881 * 121.72778 * 359.70590 * 16 15 14 18 18 C 1.34782 * 119.99901 * 269.99689 * 10 9 7 19 19 O 1.21280 * 120.00207 * 4.66592 * 18 10 9 20 20 C 1.50700 * 119.99894 * 184.65892 * 18 10 9 21 21 H 1.09008 * 115.54861 * 10.93709 * 20 18 10 22 22 C 1.52997 * 117.50343 * 225.22107 * 20 18 10 23 23 C 1.52995 * 60.00057 * 252.51516 * 22 20 18 24 24 Cl 1.80296 * 117.49651 * 252.50583 * 23 22 20 25 25 Cl 1.80302 * 117.50052 * 107.48994 * 23 22 20 26 26 H 0.97000 * 119.99843 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.46895 * 299.99761 * 9 7 2 28 28 H 1.08999 * 109.46768 * 59.99566 * 9 7 2 29 29 H 1.08993 * 109.47295 * 23.92874 * 11 10 9 30 30 H 1.09008 * 109.47212 * 143.92935 * 11 10 9 31 31 H 1.08003 * 120.79100 * 359.97438 * 13 12 11 32 32 H 1.07996 * 120.42130 * 179.97438 * 14 13 12 33 33 H 1.08001 * 119.61721 * 180.02562 * 15 14 13 34 34 H 1.08005 * 119.62140 * 180.31141 * 17 16 15 35 35 H 1.09005 * 117.49556 * 0.02562 * 22 20 18 36 36 H 1.08997 * 117.50146 * 145.02005 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 1.4001 5 1 3.5466 1.4402 -0.7002 6 1 1.4465 2.6527 -0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.2436 -3.2661 -1.2696 12 6 3.0385 -4.0966 -1.6289 13 6 2.0323 -3.5672 -2.4227 14 6 0.9421 -4.3676 -2.7273 15 6 0.8950 -5.6578 -2.2334 16 7 1.8704 -6.1281 -1.4812 17 6 2.9247 -5.3971 -1.1757 18 6 4.2250 -3.2102 1.1663 19 8 3.9438 -2.6696 2.2149 20 6 4.8261 -4.5922 1.1685 21 1 5.2206 -4.9348 0.2119 22 6 4.1895 -5.6380 2.0860 23 6 5.5551 -5.0434 2.4357 24 17 7.0006 -6.1017 2.2325 25 17 5.6293 -3.8811 3.8121 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6801 -0.8911 28 1 3.8752 -0.6803 0.8888 29 1 4.4257 -2.5317 -2.0542 30 1 5.1145 -3.9139 -1.1691 31 1 2.0960 -2.5551 -2.7942 32 1 0.1399 -3.9879 -3.3425 33 1 0.0494 -6.2879 -2.4664 34 1 3.7064 -5.8184 -0.5610 35 1 3.3356 -5.3266 2.6878 36 1 4.1649 -6.6690 1.7331 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098078788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:25 Heat of formation + Delta-G solvation = 35.519013 kcal Electronic energy + Delta-G solvation = -23756.187365 eV Core-core repulsion = 20101.077418 eV Total energy + Delta-G solvation = -3655.109947 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.28728 -39.33308 -37.21934 -36.00327 -35.52846 -34.98508 -32.81531 -32.07946 -31.21278 -28.57776 -26.18385 -24.56609 -23.24382 -22.37969 -21.97536 -21.63185 -18.68529 -17.68063 -17.11057 -16.63573 -16.23453 -15.69351 -15.25781 -15.16632 -14.56417 -14.23998 -13.83631 -13.54986 -13.14037 -12.99360 -12.86491 -12.64528 -12.44788 -12.36822 -12.25173 -11.88365 -11.57721 -11.43855 -11.14608 -11.05663 -10.81254 -10.63453 -10.51067 -10.23522 -9.91224 -9.69598 -9.35117 -9.20769 -9.11337 -8.75605 -8.64240 -7.88695 -6.14312 -4.13197 1.10638 1.34417 1.64668 2.17932 2.59341 3.22783 3.28324 3.32054 3.43882 3.66818 4.06749 4.20089 4.33185 4.37708 4.62159 4.75788 4.92992 5.00478 5.08947 5.18384 5.26150 5.35708 5.39707 5.58112 5.67124 5.72314 5.87350 6.00489 6.48240 6.53463 6.59953 6.81469 6.97637 7.15901 7.52316 8.00788 8.20235 8.39080 8.74794 8.91231 9.45449 10.98502 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.005704 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.763438 B = 4907.955711 C = 6900.231240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.871 3.129 4 H -0.274 1.274 5 H -0.266 1.266 6 H -0.286 1.286 7 C -0.523 4.523 8 H 0.077 0.923 9 C 0.217 3.783 10 N -0.583 5.583 11 C 0.155 3.845 12 C -0.150 4.150 13 C -0.028 4.028 14 C -0.170 4.170 15 C 0.092 3.908 16 N -0.491 5.491 17 C 0.098 3.902 18 C 0.534 3.466 19 O -0.504 6.504 20 C -0.165 4.165 21 H 0.140 0.860 22 C -0.113 4.113 23 C 0.022 3.978 24 Cl -0.100 7.100 25 Cl -0.058 7.058 26 H 0.264 0.736 27 H 0.031 0.969 28 H 0.038 0.962 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.130 0.870 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.097 -11.822 -3.760 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.698 3.302 4 H -0.200 1.200 5 H -0.191 1.191 6 H -0.211 1.211 7 C -0.562 4.562 8 H 0.095 0.905 9 C 0.097 3.903 10 N -0.313 5.313 11 C 0.031 3.969 12 C -0.153 4.153 13 C -0.055 4.055 14 C -0.189 4.189 15 C -0.065 4.065 16 N -0.199 5.199 17 C -0.060 4.060 18 C 0.319 3.681 19 O -0.379 6.379 20 C -0.187 4.187 21 H 0.157 0.843 22 C -0.151 4.151 23 C -0.030 4.030 24 Cl -0.073 7.073 25 Cl -0.031 7.031 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.148 0.852 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.856 -12.196 -2.769 15.923 hybrid contribution 0.349 1.843 -0.331 1.905 sum 10.205 -10.352 -3.100 14.864 Atomic orbital electron populations 1.69892 1.06132 1.26899 1.50347 1.24830 0.94692 0.98713 0.94558 0.86943 0.80172 0.84180 0.78922 1.19971 1.19108 1.21138 1.21269 0.88868 0.94782 1.51273 0.90528 1.19759 0.96115 0.76885 0.97526 1.47835 1.64541 1.15406 1.03561 1.20350 0.93405 0.95478 0.87700 1.21207 0.99062 0.95756 0.99317 1.21531 0.91545 0.99231 0.93189 1.22124 0.99227 0.95420 1.02162 1.22645 0.96479 0.93880 0.93473 1.67605 1.01655 1.37890 1.12786 1.22565 0.95626 0.90808 0.96983 1.18971 0.79526 0.85041 0.84558 1.90787 1.50229 1.66364 1.30511 1.23453 1.02294 0.97483 0.95517 0.84284 1.23915 0.93370 0.98789 0.99061 1.26373 0.88349 0.95229 0.93085 1.98737 1.44293 1.67197 1.97046 1.98788 1.98077 1.60189 1.46002 0.92600 0.95082 0.94417 0.88943 0.90414 0.84302 0.85031 0.83310 0.83786 0.85222 0.85431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 20.61 27.47 -169.99 -4.67 15.94 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -13.87 9.89 -34.44 -0.34 -14.21 16 8 H 0.08 2.27 7.94 -52.49 -0.42 1.85 16 9 C 0.22 4.86 4.23 -5.20 -0.02 4.84 16 10 N -0.58 -10.78 2.46 -176.44 -0.43 -11.21 16 11 C 0.16 2.17 5.44 -5.19 -0.03 2.14 16 12 C -0.15 -2.25 5.43 -104.48 -0.57 -2.82 16 13 C -0.03 -0.45 9.69 -39.28 -0.38 -0.83 16 14 C -0.17 -2.47 10.11 -39.44 -0.40 -2.87 16 15 C 0.09 1.31 11.18 -17.55 -0.20 1.11 16 16 N -0.49 -7.52 10.36 -13.25 -0.14 -7.66 16 17 C 0.10 1.41 10.34 -17.55 -0.18 1.22 16 18 C 0.53 9.89 7.26 -10.98 -0.08 9.81 16 19 O -0.50 -11.32 13.77 5.56 0.08 -11.24 16 20 C -0.17 -2.23 3.82 -91.77 -0.35 -2.58 16 21 H 0.14 1.49 4.90 -51.92 -0.25 1.24 16 22 C -0.11 -1.37 9.42 -26.74 -0.25 -1.63 16 23 C 0.02 0.29 3.60 -26.74 -0.10 0.19 16 24 Cl -0.10 -1.12 29.29 -51.86 -1.52 -2.64 16 25 Cl -0.06 -0.91 26.45 -51.86 -1.37 -2.29 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.03 0.65 6.91 -51.93 -0.36 0.30 16 28 H 0.04 0.92 6.92 -51.93 -0.36 0.56 16 29 H 0.09 1.18 7.77 -51.93 -0.40 0.77 16 30 H 0.08 0.83 6.02 -51.92 -0.31 0.51 16 31 H 0.14 2.22 8.06 -52.48 -0.42 1.79 16 32 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.14 1.73 5.15 -52.48 -0.27 1.46 16 35 H 0.13 1.78 8.14 -51.93 -0.42 1.35 16 36 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -32.39 334.75 -8.88 -41.27 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -3.66 Total: 2.04 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -2.99 Total: -3.66 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.20 Total: -44.46 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -2.89 Total: -4.93 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.39 -8.88 -41.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098078788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.791 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds