Wall clock time and date at job start Tue Mar 31 2020 14:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99971 * 2 1 4 4 H 1.48500 * 109.46854 * 90.00479 * 3 2 1 5 5 H 1.48497 * 109.46920 * 210.00608 * 3 2 1 6 6 H 1.48500 * 109.46891 * 330.00478 * 3 2 1 7 7 C 1.37873 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00477 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00035 * 179.97438 * 7 2 1 10 10 N 1.46491 * 109.47179 * 179.97438 * 9 7 2 11 11 C 1.46499 * 120.00076 * 90.00191 * 10 9 7 12 12 C 1.50702 * 109.47012 * 263.92816 * 11 10 9 13 13 C 1.38667 * 120.41973 * 91.84761 * 12 11 10 14 14 C 1.38629 * 118.42439 * 180.02562 * 13 12 11 15 15 C 1.38228 * 119.15650 * 359.97438 * 14 13 12 16 16 N 1.31848 * 120.76528 * 0.02562 * 15 14 13 17 17 C 1.31881 * 121.72778 * 359.70590 * 16 15 14 18 18 C 1.34782 * 119.99901 * 269.99689 * 10 9 7 19 19 O 1.21280 * 120.00207 * 4.66592 * 18 10 9 20 20 C 1.50700 * 119.99894 * 184.65892 * 18 10 9 21 21 H 1.09008 * 115.54861 * 10.93709 * 20 18 10 22 22 C 1.52997 * 117.50343 * 225.22107 * 20 18 10 23 23 C 1.52995 * 60.00057 * 252.51516 * 22 20 18 24 24 Cl 1.80296 * 117.49651 * 252.50583 * 23 22 20 25 25 Cl 1.80302 * 117.50052 * 107.48994 * 23 22 20 26 26 H 0.97000 * 119.99843 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.46895 * 299.99761 * 9 7 2 28 28 H 1.08999 * 109.46768 * 59.99566 * 9 7 2 29 29 H 1.08993 * 109.47295 * 23.92874 * 11 10 9 30 30 H 1.09008 * 109.47212 * 143.92935 * 11 10 9 31 31 H 1.08003 * 120.79100 * 359.97438 * 13 12 11 32 32 H 1.07996 * 120.42130 * 179.97438 * 14 13 12 33 33 H 1.08001 * 119.61721 * 180.02562 * 15 14 13 34 34 H 1.08005 * 119.62140 * 180.31141 * 17 16 15 35 35 H 1.09005 * 117.49556 * 0.02562 * 22 20 18 36 36 H 1.08997 * 117.50146 * 145.02005 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 1.4001 5 1 3.5466 1.4402 -0.7002 6 1 1.4465 2.6527 -0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.2436 -3.2661 -1.2696 12 6 3.0385 -4.0966 -1.6289 13 6 2.0323 -3.5672 -2.4227 14 6 0.9421 -4.3676 -2.7273 15 6 0.8950 -5.6578 -2.2334 16 7 1.8704 -6.1281 -1.4812 17 6 2.9247 -5.3971 -1.1757 18 6 4.2250 -3.2102 1.1663 19 8 3.9438 -2.6696 2.2149 20 6 4.8261 -4.5922 1.1685 21 1 5.2206 -4.9348 0.2119 22 6 4.1895 -5.6380 2.0860 23 6 5.5551 -5.0434 2.4357 24 17 7.0006 -6.1017 2.2325 25 17 5.6293 -3.8811 3.8121 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6801 -0.8911 28 1 3.8752 -0.6803 0.8888 29 1 4.4257 -2.5317 -2.0542 30 1 5.1145 -3.9139 -1.1691 31 1 2.0960 -2.5551 -2.7942 32 1 0.1399 -3.9879 -3.3425 33 1 0.0494 -6.2879 -2.4664 34 1 3.7064 -5.8184 -0.5610 35 1 3.3356 -5.3266 2.6878 36 1 4.1649 -6.6690 1.7331 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098078788.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:24 Heat of formation + Delta-G solvation = 15.937237 kcal Electronic energy + Delta-G solvation = -23757.036495 eV Core-core repulsion = 20101.077418 eV Total energy + Delta-G solvation = -3655.959077 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.53175 -40.56119 -38.37140 -37.09245 -36.87193 -36.13396 -34.75891 -33.35512 -32.47753 -30.32735 -27.38880 -26.08757 -24.39618 -23.58024 -23.19010 -23.04549 -19.98239 -19.08439 -18.90471 -17.85655 -17.49699 -16.87498 -16.70123 -16.44656 -16.03356 -15.59146 -15.35385 -14.72531 -14.60153 -14.23221 -14.07078 -14.01996 -13.85454 -13.68000 -13.44348 -13.33606 -12.88136 -12.79730 -12.54528 -12.42572 -12.18768 -12.03873 -11.83421 -11.68696 -11.62884 -10.98840 -10.78483 -10.61185 -10.51832 -10.37852 -9.89820 -9.42435 -8.26882 -6.29241 0.07669 0.21249 0.47267 1.11762 1.33713 1.36824 1.38401 1.44267 2.15900 2.33639 2.47255 2.94950 3.05252 3.08979 3.29780 3.54634 3.61793 3.88119 3.91023 4.03961 4.17981 4.21822 4.49227 4.52719 4.62640 4.67485 4.74988 4.82768 4.93278 4.97155 5.31274 5.41607 5.51434 5.62183 5.86332 6.29885 6.59123 6.73467 7.07430 7.25617 7.38756 8.89210 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010388 B = 0.005704 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.763438 B = 4907.955711 C = 6900.231240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.016 3.984 3 Si 0.934 3.066 4 H -0.284 1.284 5 H -0.235 1.235 6 H -0.282 1.282 7 C -0.511 4.511 8 H 0.034 0.966 9 C 0.224 3.776 10 N -0.587 5.587 11 C 0.150 3.850 12 C -0.159 4.159 13 C -0.051 4.051 14 C -0.181 4.181 15 C 0.087 3.913 16 N -0.505 5.505 17 C 0.096 3.904 18 C 0.525 3.475 19 O -0.553 6.553 20 C -0.163 4.163 21 H 0.175 0.825 22 C -0.102 4.102 23 C 0.022 3.978 24 Cl -0.074 7.074 25 Cl -0.089 7.089 26 H 0.264 0.736 27 H 0.054 0.946 28 H 0.018 0.982 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.144 0.856 33 H 0.176 0.824 34 H 0.171 0.829 35 H 0.110 0.890 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.303 -13.266 -4.891 18.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.182 4.182 3 Si 0.758 3.242 4 H -0.210 1.210 5 H -0.158 1.158 6 H -0.208 1.208 7 C -0.550 4.550 8 H 0.052 0.948 9 C 0.102 3.898 10 N -0.317 5.317 11 C 0.027 3.973 12 C -0.162 4.162 13 C -0.077 4.077 14 C -0.201 4.201 15 C -0.069 4.069 16 N -0.214 5.214 17 C -0.061 4.061 18 C 0.313 3.687 19 O -0.431 6.431 20 C -0.185 4.185 21 H 0.192 0.808 22 C -0.140 4.140 23 C -0.030 4.030 24 Cl -0.047 7.047 25 Cl -0.062 7.062 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.124 0.876 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.162 0.838 33 H 0.193 0.807 34 H 0.188 0.812 35 H 0.129 0.871 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 12.097 -13.677 -3.942 18.680 hybrid contribution -0.374 2.165 0.011 2.197 sum 11.723 -11.512 -3.931 16.894 Atomic orbital electron populations 1.70047 1.08040 1.27762 1.52627 1.25677 0.95402 1.02593 0.94544 0.85929 0.80210 0.79529 0.78538 1.21049 1.15773 1.20770 1.21408 0.91064 0.92930 1.49603 0.94759 1.19440 0.93195 0.79755 0.97393 1.47854 1.64020 1.14335 1.05496 1.20708 0.94412 0.96209 0.85967 1.21336 0.99265 0.96309 0.99322 1.21665 0.92701 0.99135 0.94228 1.22360 0.99379 0.95797 1.02543 1.23102 0.97035 0.94002 0.92787 1.67670 1.02175 1.38322 1.13205 1.22974 0.95981 0.90524 0.96631 1.19755 0.78723 0.86556 0.83714 1.90766 1.52195 1.67959 1.32192 1.23403 1.02895 0.94819 0.97370 0.80835 1.24066 0.92102 1.00100 0.97721 1.26370 0.89780 0.95115 0.91753 1.98746 1.43050 1.66063 1.96858 1.98788 1.98211 1.61586 1.47585 0.92724 0.92819 0.96358 0.87610 0.86147 0.85404 0.83789 0.80671 0.81177 0.87132 0.81607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.48 13.96 21.45 0.30 -57.18 16 2 C 0.02 0.88 5.47 84.65 0.46 1.34 16 3 Si 0.93 42.66 27.47 68.60 1.88 44.55 16 4 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.23 -9.43 6.54 99.48 0.65 -8.78 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.51 -27.63 9.89 25.60 0.25 -27.38 16 8 H 0.03 2.11 7.94 -2.91 -0.02 2.08 16 9 C 0.22 9.89 4.23 85.64 0.36 10.25 16 10 N -0.59 -20.94 2.46 -830.51 -2.04 -22.98 16 11 C 0.15 3.79 5.44 85.63 0.47 4.25 16 12 C -0.16 -4.52 5.43 -19.77 -0.11 -4.62 16 13 C -0.05 -1.59 9.69 22.47 0.22 -1.38 16 14 C -0.18 -5.23 10.11 22.36 0.23 -5.00 16 15 C 0.09 2.37 11.18 84.69 0.95 3.31 16 16 N -0.50 -14.45 10.36 -195.84 -2.03 -16.48 16 17 C 0.10 2.53 10.34 84.67 0.88 3.40 16 18 C 0.53 18.91 7.26 87.66 0.64 19.54 16 19 O -0.55 -25.11 13.77 -3.03 -0.04 -25.15 16 20 C -0.16 -3.95 3.82 -11.54 -0.04 -4.00 16 21 H 0.17 2.88 4.90 -2.38 -0.01 2.87 16 22 C -0.10 -2.21 9.42 30.59 0.29 -1.92 16 23 C 0.02 0.53 3.60 30.59 0.11 0.64 16 24 Cl -0.07 -1.43 29.29 -2.72 -0.08 -1.51 16 25 Cl -0.09 -2.77 26.45 -2.72 -0.07 -2.84 16 26 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 27 H 0.05 2.14 6.91 -2.39 -0.02 2.12 16 28 H 0.02 0.89 6.92 -2.39 -0.02 0.87 16 29 H 0.11 2.40 7.77 -2.39 -0.02 2.38 16 30 H 0.12 2.00 6.02 -2.38 -0.01 1.98 16 31 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 32 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 33 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.17 3.38 5.15 -2.91 -0.01 3.37 16 35 H 0.11 2.92 8.14 -2.38 -0.02 2.90 16 36 H 0.17 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -73.64 334.75 3.68 -69.95 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 1.07 Total: 13.20 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 4.69 Total: -1.56 kcal Atomic # 7 Polarization: -92.87 SS G_CDS: -3.77 Total: -96.64 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.04 Total: -25.15 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.55 kcal Atomic # 17 Polarization: -4.20 SS G_CDS: -0.15 Total: -4.35 kcal Total: -73.64 3.68 -69.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098078788.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.888 kcal (2) G-P(sol) polarization free energy of solvation -73.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds