Wall clock time and date at job start Tue Mar 31 2020 14:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00225 * 2 1 4 4 H 1.48496 * 109.47101 * 270.00079 * 3 2 1 5 5 H 1.48504 * 109.46746 * 30.00230 * 3 2 1 6 6 H 1.48496 * 109.46981 * 149.99817 * 3 2 1 7 7 C 1.37881 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00226 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99848 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47307 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00148 * 89.99975 * 10 9 7 12 12 C 1.50699 * 109.47123 * 270.00221 * 11 10 9 13 13 C 1.38675 * 120.41772 * 89.99701 * 12 11 10 14 14 C 1.38630 * 118.41860 * 179.74920 * 13 12 11 15 15 C 1.38224 * 119.16347 * 0.25530 * 14 13 12 16 16 N 1.31856 * 120.76155 * 359.97390 * 15 14 13 17 17 C 1.31888 * 121.72786 * 0.02789 * 16 15 14 18 18 C 1.34776 * 119.99821 * 270.00575 * 10 9 7 19 19 O 1.21281 * 120.00197 * 359.97438 * 18 10 9 20 20 C 1.50705 * 120.00221 * 179.97438 * 18 10 9 21 21 H 1.09003 * 115.54525 * 34.41287 * 20 18 10 22 22 C 1.52993 * 117.50015 * 180.08335 * 20 18 10 23 23 C 1.52993 * 117.49934 * 248.74820 * 20 18 10 24 24 Cl 1.80303 * 117.49903 * 359.97438 * 23 20 18 25 25 Cl 1.80303 * 117.50205 * 145.01645 * 23 20 18 26 26 H 0.97001 * 120.00230 * 359.97438 * 1 2 3 27 27 H 1.09010 * 109.46912 * 59.99926 * 9 7 2 28 28 H 1.09001 * 109.47053 * 300.00108 * 9 7 2 29 29 H 1.09002 * 109.46985 * 150.00482 * 11 10 9 30 30 H 1.08994 * 109.47003 * 30.00029 * 11 10 9 31 31 H 1.08002 * 120.79244 * 0.03059 * 13 12 11 32 32 H 1.07997 * 120.41760 * 180.23193 * 14 13 12 33 33 H 1.07997 * 119.61788 * 180.02562 * 15 14 13 34 34 H 1.07999 * 119.61441 * 179.97438 * 17 16 15 35 35 H 1.09010 * 117.49519 * 214.97663 * 22 20 18 36 36 H 1.08997 * 117.50072 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0027 11 6 2.6789 -4.1684 1.2719 12 6 3.9221 -3.4356 1.7063 13 6 3.8283 -2.3065 2.5059 14 6 4.9986 -1.6678 2.8854 15 6 6.2113 -2.1709 2.4530 16 7 6.2622 -3.2446 1.6893 17 6 5.1695 -3.8776 1.3089 18 6 2.6409 -4.1259 -1.1641 19 8 2.2466 -3.6661 -2.2148 20 6 3.6206 -5.2710 -1.1631 21 1 3.5039 -5.9888 -0.3511 22 6 4.0812 -5.8078 -2.5198 23 6 5.0408 -4.9860 -1.6555 24 17 5.4142 -3.3060 -2.1931 25 17 6.3935 -5.8636 -0.8487 26 1 -0.4850 0.8400 0.0004 27 1 0.6239 -2.5575 -0.8881 28 1 0.6247 -2.5563 0.8920 29 1 2.9073 -5.2263 1.1424 30 1 1.9056 -4.0538 2.0314 31 1 2.8666 -1.9362 2.8290 32 1 4.9634 -0.7880 3.5108 33 1 7.1276 -1.6793 2.7446 34 1 5.2510 -4.7538 0.6828 35 1 4.2680 -6.8788 -2.6002 36 1 3.6753 -5.3330 -3.4130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098078789.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:27 Heat of formation + Delta-G solvation = 27.505856 kcal Electronic energy + Delta-G solvation = -24316.187023 eV Core-core repulsion = 20660.729599 eV Total energy + Delta-G solvation = -3655.457424 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17616 -39.24265 -37.19695 -35.98227 -35.49269 -34.90742 -32.84836 -31.96305 -31.06506 -27.98453 -26.08232 -24.52570 -23.19770 -22.27912 -22.03957 -21.80149 -18.63070 -17.51135 -16.84293 -16.52713 -16.13448 -15.80838 -15.23461 -14.93404 -14.67594 -14.20335 -13.95204 -13.42880 -13.12697 -12.83360 -12.75475 -12.53639 -12.30857 -12.18112 -11.97106 -11.82722 -11.33056 -11.28960 -11.01863 -10.90565 -10.77597 -10.68789 -10.49086 -10.26824 -9.87966 -9.72742 -9.27601 -9.17756 -9.05212 -8.66721 -8.47022 -7.83628 -6.09692 -4.12433 1.13451 1.44919 1.75091 2.16461 2.66003 3.26771 3.33909 3.36178 3.49556 3.72973 4.15796 4.24577 4.35920 4.42421 4.78033 4.82442 4.98627 5.14414 5.16426 5.25686 5.35313 5.40195 5.45075 5.63367 5.74089 5.82957 5.97160 6.10996 6.55940 6.68789 6.87423 7.08341 7.31271 7.40007 7.87412 8.15898 8.18894 8.34489 8.76742 8.95191 9.52293 10.98605 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.012426 B = 0.006331 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.883000 B = 4421.892001 C = 5282.752657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.247 3.753 10 N -0.582 5.582 11 C 0.154 3.846 12 C -0.151 4.151 13 C -0.030 4.030 14 C -0.178 4.178 15 C 0.090 3.910 16 N -0.482 5.482 17 C 0.096 3.904 18 C 0.537 3.463 19 O -0.517 6.517 20 C -0.165 4.165 21 H 0.140 0.860 22 C -0.114 4.114 23 C 0.012 3.988 24 Cl -0.062 7.062 25 Cl -0.087 7.087 26 H 0.263 0.737 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.125 0.875 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.941 -12.377 3.401 15.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.128 3.872 10 N -0.313 5.313 11 C 0.029 3.971 12 C -0.154 4.154 13 C -0.057 4.057 14 C -0.198 4.198 15 C -0.067 4.067 16 N -0.191 5.191 17 C -0.061 4.061 18 C 0.322 3.678 19 O -0.393 6.393 20 C -0.187 4.187 21 H 0.158 0.842 22 C -0.152 4.152 23 C -0.040 4.040 24 Cl -0.034 7.034 25 Cl -0.060 7.060 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.156 0.844 32 H 0.146 0.854 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.144 0.856 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.480 -12.223 2.594 15.684 hybrid contribution -0.108 1.588 0.472 1.660 sum 9.371 -10.635 3.067 14.503 Atomic orbital electron populations 1.69916 1.05882 1.26950 1.50637 1.24864 0.94746 0.98939 0.95239 0.86637 0.79868 0.83506 0.78374 1.20639 1.21158 1.19810 1.21367 0.93367 0.90183 1.50535 0.92284 1.19392 0.87057 0.82083 0.98627 1.48175 1.44667 1.35195 1.03224 1.20348 0.93526 0.95544 0.87653 1.21228 0.96589 0.98356 0.99216 1.21512 0.99061 0.92096 0.93028 1.22085 0.93741 1.01344 1.02647 1.22645 0.97353 0.92760 0.93988 1.67637 1.32186 1.08229 1.11009 1.22985 0.87559 0.99049 0.96510 1.18916 0.81548 0.82655 0.84711 1.90709 1.57299 1.60595 1.30665 1.23506 0.92351 1.01714 1.01141 0.84199 1.23932 0.95139 1.00534 0.95625 1.26518 0.85277 0.87501 1.04687 1.98808 1.95070 1.19631 1.89933 1.98741 1.50978 1.75818 1.80457 0.92758 0.93590 0.94779 0.90690 0.89094 0.84377 0.85387 0.83582 0.83380 0.85647 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -13.68 8.84 -34.44 -0.30 -13.99 16 8 H 0.06 1.63 7.58 -52.49 -0.40 1.23 16 9 C 0.25 5.95 5.20 -5.19 -0.03 5.92 16 10 N -0.58 -11.30 2.44 -176.43 -0.43 -11.73 16 11 C 0.15 2.33 5.45 -5.20 -0.03 2.30 16 12 C -0.15 -2.45 5.48 -104.48 -0.57 -3.03 16 13 C -0.03 -0.51 9.08 -39.27 -0.36 -0.86 16 14 C -0.18 -2.73 10.11 -39.44 -0.40 -3.12 16 15 C 0.09 1.36 11.18 -17.55 -0.20 1.17 16 16 N -0.48 -8.03 10.36 -13.25 -0.14 -8.16 16 17 C 0.10 1.55 10.24 -17.55 -0.18 1.37 16 18 C 0.54 10.27 6.54 -10.98 -0.07 10.20 16 19 O -0.52 -11.95 15.68 5.56 0.09 -11.86 16 20 C -0.16 -2.30 3.93 -91.78 -0.36 -2.66 16 21 H 0.14 1.51 6.44 -51.93 -0.33 1.18 16 22 C -0.11 -1.35 9.73 -26.70 -0.26 -1.61 16 23 C 0.01 0.17 2.51 -26.70 -0.07 0.11 16 24 Cl -0.06 -1.09 28.19 -51.86 -1.46 -2.56 16 25 Cl -0.09 -1.09 26.89 -51.86 -1.39 -2.48 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 27 H 0.05 1.27 7.42 -51.92 -0.39 0.88 16 28 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 29 H 0.07 0.88 5.95 -51.93 -0.31 0.57 16 30 H 0.09 1.26 7.85 -51.93 -0.41 0.85 16 31 H 0.14 2.30 8.06 -52.49 -0.42 1.87 16 32 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.15 1.79 8.06 -52.49 -0.42 1.36 16 34 H 0.15 2.20 2.88 -52.49 -0.15 2.05 16 35 H 0.13 1.03 8.14 -51.92 -0.42 0.61 16 36 H 0.13 1.74 7.67 -51.93 -0.40 1.34 16 LS Contribution 335.75 15.07 5.06 5.06 Total: -1.00 -32.05 335.75 -9.10 -41.15 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -3.62 Total: 1.31 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.92 Total: -2.55 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.17 Total: -44.67 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -2.86 Total: -5.04 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.05 -9.10 -41.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098078789.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.660 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds