Wall clock time and date at job start Tue Mar 31 2020 14:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00225 * 2 1 4 4 H 1.48496 * 109.47101 * 270.00079 * 3 2 1 5 5 H 1.48504 * 109.46746 * 30.00230 * 3 2 1 6 6 H 1.48496 * 109.46981 * 149.99817 * 3 2 1 7 7 C 1.37881 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00226 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99848 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47307 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00148 * 89.99975 * 10 9 7 12 12 C 1.50699 * 109.47123 * 270.00221 * 11 10 9 13 13 C 1.38675 * 120.41772 * 89.99701 * 12 11 10 14 14 C 1.38630 * 118.41860 * 179.74920 * 13 12 11 15 15 C 1.38224 * 119.16347 * 0.25530 * 14 13 12 16 16 N 1.31856 * 120.76155 * 359.97390 * 15 14 13 17 17 C 1.31888 * 121.72786 * 0.02789 * 16 15 14 18 18 C 1.34776 * 119.99821 * 270.00575 * 10 9 7 19 19 O 1.21281 * 120.00197 * 359.97438 * 18 10 9 20 20 C 1.50705 * 120.00221 * 179.97438 * 18 10 9 21 21 H 1.09003 * 115.54525 * 34.41287 * 20 18 10 22 22 C 1.52993 * 117.50015 * 180.08335 * 20 18 10 23 23 C 1.52993 * 117.49934 * 248.74820 * 20 18 10 24 24 Cl 1.80303 * 117.49903 * 359.97438 * 23 20 18 25 25 Cl 1.80303 * 117.50205 * 145.01645 * 23 20 18 26 26 H 0.97001 * 120.00230 * 359.97438 * 1 2 3 27 27 H 1.09010 * 109.46912 * 59.99926 * 9 7 2 28 28 H 1.09001 * 109.47053 * 300.00108 * 9 7 2 29 29 H 1.09002 * 109.46985 * 150.00482 * 11 10 9 30 30 H 1.08994 * 109.47003 * 30.00029 * 11 10 9 31 31 H 1.08002 * 120.79244 * 0.03059 * 13 12 11 32 32 H 1.07997 * 120.41760 * 180.23193 * 14 13 12 33 33 H 1.07997 * 119.61788 * 180.02562 * 15 14 13 34 34 H 1.07999 * 119.61441 * 179.97438 * 17 16 15 35 35 H 1.09010 * 117.49519 * 214.97663 * 22 20 18 36 36 H 1.08997 * 117.50072 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0027 11 6 2.6789 -4.1684 1.2719 12 6 3.9221 -3.4356 1.7063 13 6 3.8283 -2.3065 2.5059 14 6 4.9986 -1.6678 2.8854 15 6 6.2113 -2.1709 2.4530 16 7 6.2622 -3.2446 1.6893 17 6 5.1695 -3.8776 1.3089 18 6 2.6409 -4.1259 -1.1641 19 8 2.2466 -3.6661 -2.2148 20 6 3.6206 -5.2710 -1.1631 21 1 3.5039 -5.9888 -0.3511 22 6 4.0812 -5.8078 -2.5198 23 6 5.0408 -4.9860 -1.6555 24 17 5.4142 -3.3060 -2.1931 25 17 6.3935 -5.8636 -0.8487 26 1 -0.4850 0.8400 0.0004 27 1 0.6239 -2.5575 -0.8881 28 1 0.6247 -2.5563 0.8920 29 1 2.9073 -5.2263 1.1424 30 1 1.9056 -4.0538 2.0314 31 1 2.8666 -1.9362 2.8290 32 1 4.9634 -0.7880 3.5108 33 1 7.1276 -1.6793 2.7446 34 1 5.2510 -4.7538 0.6828 35 1 4.2680 -6.8788 -2.6002 36 1 3.6753 -5.3330 -3.4130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098078789.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:27 Heat of formation + Delta-G solvation = 8.768307 kcal Electronic energy + Delta-G solvation = -24316.999544 eV Core-core repulsion = 20660.729599 eV Total energy + Delta-G solvation = -3656.269945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.49989 -40.54233 -38.42089 -37.14095 -36.95898 -36.12976 -34.82755 -33.28497 -32.38894 -29.81042 -27.37613 -26.19158 -24.43308 -23.67529 -23.33293 -23.04806 -19.98937 -18.81218 -18.66833 -17.95811 -17.47217 -17.02554 -16.81041 -16.40373 -16.15206 -15.56014 -15.44924 -14.70974 -14.45438 -14.31283 -14.10547 -13.93988 -13.76193 -13.45475 -13.24737 -13.13354 -13.04371 -12.84067 -12.60920 -12.49247 -12.23784 -12.10277 -11.93344 -11.70170 -11.65283 -11.02112 -10.70643 -10.63825 -10.53542 -10.31136 -9.89139 -9.47405 -8.20218 -6.28733 0.02439 0.23569 0.50203 1.01543 1.30655 1.34326 1.39110 1.43302 2.16762 2.39106 2.43519 2.98186 3.05830 3.12190 3.27590 3.57403 3.64142 3.88566 3.94593 4.06797 4.19191 4.23462 4.49655 4.56790 4.64927 4.75283 4.79309 4.93350 5.03486 5.27388 5.32591 5.44199 5.60108 5.82383 5.88780 6.10911 6.62930 6.79285 7.13201 7.27066 7.43141 8.87128 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.012426 B = 0.006331 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.883000 B = 4421.892001 C = 5282.752657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.018 3.982 3 Si 0.940 3.060 4 H -0.290 1.290 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.510 4.510 8 H 0.046 0.954 9 C 0.263 3.737 10 N -0.586 5.586 11 C 0.149 3.851 12 C -0.161 4.161 13 C -0.050 4.050 14 C -0.183 4.183 15 C 0.085 3.915 16 N -0.498 5.498 17 C 0.093 3.907 18 C 0.531 3.469 19 O -0.567 6.567 20 C -0.166 4.166 21 H 0.179 0.821 22 C -0.090 4.090 23 C 0.006 3.994 24 Cl -0.104 7.104 25 Cl -0.066 7.066 26 H 0.264 0.736 27 H 0.004 0.996 28 H 0.032 0.968 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.130 0.870 32 H 0.148 0.852 33 H 0.175 0.825 34 H 0.161 0.839 35 H 0.173 0.827 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.605 -14.007 4.316 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.181 4.181 3 Si 0.766 3.234 4 H -0.216 1.216 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.549 4.549 8 H 0.064 0.936 9 C 0.142 3.858 10 N -0.315 5.315 11 C 0.026 3.974 12 C -0.164 4.164 13 C -0.076 4.076 14 C -0.202 4.202 15 C -0.071 4.071 16 N -0.206 5.206 17 C -0.064 4.064 18 C 0.318 3.682 19 O -0.446 6.446 20 C -0.188 4.188 21 H 0.196 0.804 22 C -0.128 4.128 23 C -0.046 4.046 24 Cl -0.077 7.077 25 Cl -0.039 7.039 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.050 0.950 29 H 0.134 0.866 30 H 0.120 0.880 31 H 0.148 0.852 32 H 0.166 0.834 33 H 0.192 0.808 34 H 0.177 0.823 35 H 0.191 0.809 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.170 -13.880 3.546 18.166 hybrid contribution -0.587 2.036 0.217 2.130 sum 10.583 -11.845 3.763 16.323 Atomic orbital electron populations 1.70004 1.07008 1.27640 1.51850 1.25531 0.95439 1.01808 0.95311 0.85825 0.79249 0.80495 0.77805 1.21624 1.19974 1.18985 1.21467 0.92658 0.91349 1.49413 0.93584 1.18843 0.87417 0.83176 0.96321 1.48097 1.44020 1.34120 1.05306 1.20674 0.93464 0.97391 0.85899 1.21328 0.97064 0.98545 0.99428 1.21650 0.99340 0.92791 0.93843 1.22359 0.93403 1.01841 1.02646 1.23136 0.98455 0.92338 0.93221 1.67671 1.32483 1.08922 1.11569 1.23176 0.87374 0.99429 0.96436 1.19694 0.81538 0.83331 0.83635 1.90682 1.59099 1.62498 1.32352 1.23488 0.90689 1.00433 1.04182 0.80363 1.24161 0.92177 1.02592 0.93828 1.26635 0.85751 0.86170 1.06029 1.98803 1.95302 1.23201 1.90374 1.98747 1.50132 1.74836 1.80138 0.92673 0.97830 0.95017 0.86565 0.88049 0.85210 0.83393 0.80775 0.82261 0.80925 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.78 13.29 21.45 0.28 -53.50 16 2 C 0.02 1.01 5.46 84.66 0.46 1.47 16 3 Si 0.94 44.68 29.54 68.60 2.03 46.71 16 4 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 5 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.51 -27.59 8.84 25.60 0.23 -27.36 16 8 H 0.05 2.58 7.58 -2.91 -0.02 2.56 16 9 C 0.26 13.03 5.20 85.63 0.45 13.48 16 10 N -0.59 -22.60 2.44 -830.50 -2.03 -24.63 16 11 C 0.15 4.24 5.45 85.63 0.47 4.71 16 12 C -0.16 -5.00 5.48 -19.77 -0.11 -5.11 16 13 C -0.05 -1.61 9.08 22.47 0.20 -1.40 16 14 C -0.18 -5.31 10.11 22.36 0.23 -5.08 16 15 C 0.09 2.41 11.18 84.69 0.95 3.36 16 16 N -0.50 -15.57 10.36 -195.85 -2.03 -17.60 16 17 C 0.09 2.81 10.24 84.67 0.87 3.67 16 18 C 0.53 20.05 6.54 87.66 0.57 20.62 16 19 O -0.57 -26.84 15.68 -3.03 -0.05 -26.89 16 20 C -0.17 -4.20 3.93 -11.54 -0.05 -4.24 16 21 H 0.18 3.03 6.44 -2.39 -0.02 3.01 16 22 C -0.09 -1.86 9.73 30.62 0.30 -1.56 16 23 C 0.01 0.16 2.51 30.62 0.08 0.24 16 24 Cl -0.10 -3.64 28.19 -2.72 -0.08 -3.71 16 25 Cl -0.07 -1.44 26.89 -2.72 -0.07 -1.51 16 26 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 27 H 0.00 0.21 7.42 -2.38 -0.02 0.19 16 28 H 0.03 1.57 7.89 -2.39 -0.02 1.55 16 29 H 0.12 2.31 5.95 -2.39 -0.01 2.29 16 30 H 0.10 2.66 7.85 -2.39 -0.02 2.64 16 31 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 32 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 33 H 0.18 3.78 8.06 -2.91 -0.02 3.75 16 34 H 0.16 4.28 2.88 -2.91 -0.01 4.27 16 35 H 0.17 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.12 2.93 7.67 -2.39 -0.02 2.92 16 Total: -1.00 -72.01 335.75 3.83 -68.18 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.13 Total: 10.16 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 4.64 Total: 2.79 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -3.77 Total: -95.73 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.05 Total: -26.89 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 17 Polarization: -5.07 SS G_CDS: -0.15 Total: -5.22 kcal Total: -72.01 3.83 -68.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098078789.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.949 kcal (2) G-P(sol) polarization free energy of solvation -72.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds