Wall clock time and date at job start Tue Mar 31 2020 15:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.47240 * 2 1 4 4 O 1.42905 * 109.47074 * 240.00273 * 2 1 3 5 5 C 1.35914 * 117.00414 * 84.95237 * 4 2 1 6 6 C 1.38747 * 120.04252 * 354.65651 * 5 4 2 7 7 C 1.38115 * 119.95955 * 180.02562 * 6 5 4 8 8 C 1.38389 * 120.04185 * 359.96861 * 7 6 5 9 9 Cl 1.73606 * 119.95771 * 180.02562 * 8 7 6 10 10 C 1.38343 * 120.08761 * 0.05277 * 8 7 6 11 11 C 1.38168 * 120.03829 * 359.95242 * 10 8 7 12 12 N 1.48005 * 120.01958 * 180.30308 * 11 10 8 13 13 O 1.21806 * 120.00290 * 359.71903 * 12 11 10 14 14 O 1.21799 * 120.00227 * 179.71980 * 12 11 10 15 15 C 1.50698 * 109.47303 * 120.00000 * 2 1 3 16 16 O 1.21292 * 119.99946 * 119.99480 * 15 2 1 17 17 N 1.34780 * 119.99701 * 300.00164 * 15 2 1 18 18 C 1.46497 * 120.00142 * 359.97438 * 17 15 2 19 19 C 1.37100 * 119.99568 * 179.97438 * 17 15 2 20 20 H 1.08001 * 120.00405 * 22.97265 * 19 17 15 21 21 C 1.38944 * 119.99688 * 202.96282 * 19 17 15 22 22 N 1.31407 * 120.00446 * 10.55807 * 21 19 17 23 23 Si 1.86801 * 120.00041 * 190.55405 * 21 19 17 24 24 H 1.48497 * 109.47249 * 60.00155 * 23 21 19 25 25 H 1.48501 * 109.47436 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47180 * 300.00308 * 23 21 19 27 27 H 1.09004 * 109.47030 * 300.00439 * 1 2 3 28 28 H 1.09002 * 109.47114 * 59.99822 * 1 2 3 29 29 H 1.09000 * 109.47414 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.01994 * 0.03571 * 6 5 4 31 31 H 1.08006 * 119.98095 * 180.02562 * 7 6 5 32 32 H 1.07997 * 119.98435 * 179.97438 * 10 8 7 33 33 H 1.09005 * 109.46833 * 92.98227 * 18 17 15 34 34 H 1.09001 * 109.47109 * 212.97908 * 18 17 15 35 35 H 1.08997 * 109.47157 * 332.98594 * 18 17 15 36 36 H 0.96998 * 120.00464 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.1116 0.0624 -2.3046 6 6 1.6601 1.3742 -2.3275 7 6 1.7674 2.1204 -3.4848 8 6 2.3254 1.5607 -4.6208 9 17 2.4598 2.5009 -6.0740 10 6 2.7757 0.2528 -4.6001 11 6 2.6700 -0.4969 -3.4443 12 7 3.1580 -1.8939 -3.4207 13 8 3.6484 -2.3848 -4.4218 14 8 3.0693 -2.5529 -2.4002 15 6 2.0324 -0.7104 1.2304 16 8 2.7296 -1.6966 1.1191 17 7 1.7067 -0.2499 2.4545 18 6 0.8649 0.9415 2.5889 19 6 2.1633 -0.8965 3.5739 20 1 3.0471 -1.5147 3.5178 21 6 1.4892 -0.7563 4.7807 22 7 0.3083 -0.1806 4.8107 23 14 2.2614 -1.3862 6.3607 24 1 3.5549 -0.6938 6.5899 25 1 1.3472 -1.1180 7.4998 26 1 2.4958 -2.8483 6.2484 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.2252 1.8116 -1.4409 31 1 1.4165 3.1417 -3.5029 32 1 3.2105 -0.1824 -5.4877 33 1 -0.1793 0.6407 2.6753 34 1 1.1585 1.4951 3.4808 35 1 0.9890 1.5750 1.7107 36 1 -0.1622 -0.0824 5.6533 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101515063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:04 Heat of formation + Delta-G solvation = -48.222818 kcal Electronic energy + Delta-G solvation = -25838.471020 eV Core-core repulsion = 21739.020590 eV Total energy + Delta-G solvation = -4099.450430 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.29407 -41.87085 -40.43381 -39.03511 -37.56310 -37.46406 -36.71927 -34.27900 -33.37275 -32.40407 -31.20867 -28.16075 -27.68901 -27.01310 -25.37603 -23.98081 -23.49381 -21.11143 -20.78214 -19.74078 -19.04634 -18.97444 -18.60885 -17.97283 -17.35226 -16.93785 -16.83352 -16.51175 -16.12063 -15.86715 -15.66020 -15.00289 -14.73583 -14.29304 -13.95782 -13.86226 -13.69274 -13.24057 -13.15159 -13.06654 -12.85980 -12.73096 -12.67571 -12.45349 -12.35077 -12.29732 -12.23929 -12.13385 -11.97251 -11.91252 -11.01765 -10.89070 -10.38578 -9.74296 -9.67846 -8.36791 -6.03134 -1.31941 -0.35438 0.14151 0.26683 0.88129 1.36920 1.38873 1.45659 1.56036 1.89249 1.97806 2.28368 2.90157 3.04395 3.14917 3.30483 3.54205 3.56901 3.61177 3.81216 3.87313 4.03535 4.25771 4.49741 4.55755 4.57751 4.67952 4.68242 4.92699 4.99956 5.12437 5.18523 5.41887 5.42451 5.78074 6.06618 6.44307 6.46418 7.12203 7.36325 7.92966 8.63930 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020824 B = 0.003148 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.283337 B = 8892.138402 C = 9890.260405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.077 3.923 3 H 0.129 0.871 4 O -0.280 6.280 5 C 0.189 3.811 6 C -0.197 4.197 7 C 0.012 3.988 8 C -0.077 4.077 9 Cl -0.028 7.028 10 C -0.009 4.009 11 C -0.097 4.097 12 N 0.036 4.964 13 O -0.157 6.157 14 O -0.205 6.205 15 C 0.431 3.569 16 O -0.618 6.618 17 N -0.449 5.449 18 C 0.111 3.889 19 C -0.348 4.348 20 H 0.067 0.933 21 C 0.007 3.993 22 N -0.888 5.888 23 Si 0.986 3.014 24 H -0.267 1.267 25 H -0.266 1.266 26 H -0.282 1.282 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.047 0.953 30 H 0.192 0.808 31 H 0.201 0.799 32 H 0.177 0.823 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 14.789 -17.295 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.018 3.982 3 H 0.146 0.854 4 O -0.189 6.189 5 C 0.138 3.862 6 C -0.216 4.216 7 C -0.006 4.006 8 C -0.105 4.105 9 Cl 0.001 6.999 10 C -0.029 4.029 11 C -0.183 4.183 12 N 0.547 4.453 13 O -0.377 6.377 14 O -0.408 6.408 15 C 0.219 3.781 16 O -0.504 6.504 17 N -0.169 5.169 18 C -0.031 4.031 19 C -0.476 4.476 20 H 0.085 0.915 21 C -0.196 4.196 22 N -0.527 5.527 23 Si 0.810 3.190 24 H -0.192 1.192 25 H -0.190 1.190 26 H -0.208 1.208 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.067 0.933 30 H 0.209 0.791 31 H 0.218 0.782 32 H 0.194 0.806 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.155 14.881 -17.167 22.937 hybrid contribution 0.616 -1.286 0.921 1.697 sum -2.540 13.596 -16.246 21.336 Atomic orbital electron populations 1.22583 0.90403 1.04021 1.06469 1.22459 0.97231 0.96942 0.81528 0.85350 1.86577 1.78513 1.37552 1.16279 1.19328 0.89816 0.91869 0.85168 1.21764 1.06319 0.90608 1.02861 1.21775 0.89040 1.01874 0.87934 1.20570 1.06593 0.91787 0.91537 1.98420 1.96794 1.70691 1.33973 1.20825 0.93924 0.92281 0.95864 1.20559 1.16498 0.83537 0.97732 1.43732 0.98125 1.03516 0.99900 1.94411 1.44482 1.74166 1.24640 1.94804 1.62747 1.61547 1.21742 1.20477 0.86088 0.86493 0.85073 1.90590 1.43305 1.29923 1.86584 1.43664 1.44870 1.24975 1.03367 1.21810 0.94920 0.85707 1.00692 1.19543 1.10631 1.30092 0.87314 0.91507 1.25976 0.95225 0.96659 1.01738 1.69995 1.11778 1.42482 1.28396 0.85108 0.78482 0.78370 0.77068 1.19207 1.18992 1.20762 0.87502 0.87411 0.93343 0.79113 0.78177 0.80556 0.92046 0.92528 0.90412 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.75 8.78 71.98 0.63 -4.12 16 2 C 0.08 2.59 1.83 29.85 0.05 2.65 16 3 H 0.13 3.15 5.57 -2.38 -0.01 3.13 16 4 O -0.28 -10.51 7.34 -63.56 -0.47 -10.97 16 5 C 0.19 5.19 6.58 22.50 0.15 5.33 16 6 C -0.20 -3.07 8.24 22.36 0.18 -2.89 16 7 C 0.01 0.12 9.82 22.28 0.22 0.34 16 8 C -0.08 -1.06 6.32 22.33 0.14 -0.91 16 9 Cl -0.03 -0.31 28.95 -2.72 -0.08 -0.39 16 10 C -0.01 -0.18 9.33 22.28 0.21 0.02 16 11 C -0.10 -2.78 6.86 36.47 0.25 -2.53 16 12 N 0.04 1.33 4.45 -46.25 -0.21 1.13 16 13 O -0.16 -5.48 18.45 18.88 0.35 -5.13 16 14 O -0.21 -9.48 17.24 25.61 0.44 -9.04 16 15 C 0.43 21.17 7.11 87.66 0.62 21.79 16 16 O -0.62 -37.77 16.20 15.97 0.26 -37.51 16 17 N -0.45 -22.14 3.02 -658.89 -1.99 -24.13 16 18 C 0.11 4.24 7.04 127.77 0.90 5.13 16 19 C -0.35 -19.52 9.28 84.04 0.78 -18.74 16 20 H 0.07 4.10 7.41 -2.91 -0.02 4.08 16 21 C 0.01 0.35 5.14 84.93 0.44 0.79 16 22 N -0.89 -44.25 10.59 21.66 0.23 -44.02 16 23 Si 0.99 41.68 29.57 68.60 2.03 43.71 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 26 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 27 H 0.11 2.71 4.58 -2.38 -0.01 2.70 16 28 H 0.11 1.86 6.92 -2.39 -0.02 1.84 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.19 1.91 5.43 -2.91 -0.02 1.89 16 31 H 0.20 0.32 8.06 -2.91 -0.02 0.30 16 32 H 0.18 2.98 7.61 -2.91 -0.02 2.96 16 33 H 0.06 2.41 6.49 -2.38 -0.02 2.39 16 34 H 0.06 2.33 7.13 -2.39 -0.02 2.31 16 35 H 0.08 2.08 5.78 -2.39 -0.01 2.06 16 36 H 0.28 12.89 8.31 -92.71 -0.77 12.12 16 Total: -1.00 -80.10 324.91 6.30 -73.79 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 1.16 Total: 5.71 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 4.58 Total: 6.86 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -1.96 Total: -67.03 kcal Atomic # 8 Polarization: -63.24 SS G_CDS: 0.58 Total: -62.66 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.08 Total: -0.39 kcal Total: -80.10 6.30 -73.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.570 kcal (2) G-P(sol) polarization free energy of solvation -80.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds