Wall clock time and date at job start Tue Mar 31 2020 15:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99961 * 2 1 4 4 H 1.48496 * 109.47250 * 269.99584 * 3 2 1 5 5 H 1.48504 * 109.47084 * 30.00363 * 3 2 1 6 6 H 1.48499 * 109.46987 * 149.99720 * 3 2 1 7 7 C 1.37881 * 120.00427 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00758 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99442 * 0.02562 * 7 2 1 10 10 S 1.80993 * 109.46968 * 179.97438 * 9 7 2 11 11 C 1.76197 * 100.00318 * 179.97438 * 10 9 7 12 12 N 1.31283 * 125.81567 * 0.17635 * 11 10 9 13 13 C 1.34380 * 109.35378 * 180.28979 * 12 11 10 14 14 C 1.34398 * 108.40603 * 359.72136 * 13 12 11 15 15 N 1.36381 * 125.82534 * 179.97438 * 11 10 9 16 16 C 1.40195 * 126.53615 * 359.97438 * 15 11 10 17 17 C 1.38826 * 120.07020 * 129.70748 * 16 15 11 18 18 C 1.38120 * 119.93658 * 179.97438 * 17 16 15 19 19 C 1.38285 * 120.06636 * 359.97438 * 18 17 16 20 20 C 1.50694 * 119.93413 * 179.74387 * 19 18 17 21 21 F 1.39908 * 109.46922 * 90.00014 * 20 19 18 22 22 F 1.39897 * 109.47235 * 209.99938 * 20 19 18 23 23 F 1.39898 * 109.47361 * 330.00484 * 20 19 18 24 24 C 1.38280 * 120.12709 * 0.02562 * 19 18 17 25 25 C 1.38123 * 120.06843 * 0.02562 * 24 19 18 26 26 H 0.96999 * 120.00273 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47481 * 59.99746 * 9 7 2 28 28 H 1.09004 * 109.46755 * 299.99598 * 9 7 2 29 29 H 1.07996 * 125.79653 * 179.69863 * 13 12 11 30 30 H 1.07998 * 126.52425 * 179.97438 * 14 13 12 31 31 H 1.08000 * 120.03364 * 0.02562 * 17 16 15 32 32 H 1.08000 * 119.97115 * 180.02562 * 18 17 16 33 33 H 1.07996 * 119.96164 * 180.02562 * 24 19 18 34 34 H 1.07997 * 120.02815 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4271 -3.8749 0.0005 11 6 1.3072 -5.2351 0.0013 12 7 -0.0030 -5.1515 -0.0015 13 6 -0.5282 -6.3884 0.0066 14 6 0.4797 -7.2774 0.0086 15 7 1.6534 -6.5542 0.0011 16 6 2.9548 -7.0755 -0.0003 17 6 3.3162 -8.0466 0.9237 18 6 4.5989 -8.5586 0.9195 19 6 5.5228 -8.1054 -0.0042 20 6 6.9232 -8.6619 -0.0024 21 9 6.9816 -9.7802 -0.8411 22 9 7.8134 -7.6862 -0.4635 23 9 7.2746 -9.0362 1.2990 24 6 5.1658 -7.1382 -0.9258 25 6 3.8848 -6.6216 -0.9258 26 1 -0.4850 0.8400 0.0004 27 1 0.6246 -2.5572 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 -1.5814 -6.6274 0.0111 30 1 0.3877 -8.3534 0.0150 31 1 2.5947 -8.4019 1.6446 32 1 4.8805 -9.3144 1.6378 33 1 5.8893 -6.7865 -1.6463 34 1 3.6065 -5.8666 -1.6461 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111382572.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:01 Heat of formation + Delta-G solvation = -63.728145 kcal Electronic energy + Delta-G solvation = -24157.158005 eV Core-core repulsion = 19960.364193 eV Total energy + Delta-G solvation = -4196.793811 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.055 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.43105 -47.94168 -47.89441 -41.92280 -39.50261 -34.43148 -33.18790 -31.63595 -30.59769 -29.39557 -28.51956 -26.05369 -23.57060 -23.29368 -22.83501 -21.16153 -20.85544 -18.98281 -18.75223 -18.62989 -18.52666 -16.45795 -16.00159 -15.63174 -15.23060 -14.81105 -14.79816 -14.66393 -14.56184 -14.35059 -14.32389 -14.17051 -14.04409 -13.94587 -13.77176 -13.38212 -13.13894 -12.86165 -12.41365 -12.33196 -11.98153 -11.73494 -10.92924 -10.84998 -10.49584 -10.42929 -9.78632 -9.69712 -9.51632 -9.24782 -9.13449 -8.92670 -8.58462 -6.78776 -6.21091 -4.29021 0.32999 0.84218 1.89421 2.05351 2.35141 2.82156 3.04625 3.24318 3.30313 3.31289 3.32898 3.42322 3.51877 3.72005 4.12986 4.32129 4.40672 4.41969 4.72970 4.84414 4.93496 5.15415 5.19723 5.37874 5.47050 5.58399 5.64572 5.75147 5.84973 6.17932 6.28499 6.84190 7.12797 7.13413 7.23682 7.67394 7.92710 8.15142 8.71986 9.34516 10.89284 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.003215 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.661767 B = 8706.413065 C =10342.655728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.071 3.929 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.527 4.527 8 H 0.067 0.933 9 C 0.082 3.918 10 S -0.069 6.069 11 C 0.225 3.775 12 N -0.478 5.478 13 C -0.007 4.007 14 C -0.067 4.067 15 N -0.423 5.423 16 C 0.169 3.831 17 C -0.119 4.119 18 C -0.055 4.055 19 C -0.188 4.188 20 C 0.511 3.489 21 F -0.177 7.177 22 F -0.174 7.174 23 F -0.177 7.177 24 C -0.049 4.049 25 C -0.109 4.109 26 H 0.267 0.733 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.173 0.827 30 H 0.175 0.825 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.480 -20.362 -0.151 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.567 4.567 8 H 0.085 0.915 9 C -0.065 4.065 10 S 0.163 5.837 11 C -0.143 4.143 12 N -0.199 5.199 13 C -0.155 4.155 14 C -0.198 4.198 15 N -0.108 5.108 16 C 0.076 3.924 17 C -0.139 4.139 18 C -0.074 4.074 19 C -0.190 4.190 20 C 0.457 3.543 21 F -0.158 7.158 22 F -0.156 7.156 23 F -0.158 7.158 24 C -0.068 4.068 25 C -0.128 4.128 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.190 0.810 30 H 0.192 0.808 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.119 -19.526 -0.155 21.993 hybrid contribution -0.489 -0.101 0.048 0.501 sum 9.631 -19.627 -0.107 21.863 Atomic orbital electron populations 1.69977 1.06108 1.27452 1.48367 1.24931 0.94953 0.99149 0.94394 0.86360 0.79722 0.82209 0.78401 1.20263 1.20866 1.19520 1.20617 0.93277 0.88724 1.54045 0.91531 1.21281 0.93708 0.89093 1.02404 1.85519 1.11639 0.95094 1.91494 1.26162 0.95503 0.87298 1.05367 1.71042 1.04000 1.23981 1.20874 1.22397 0.99311 0.88314 1.05481 1.22715 0.84029 0.98457 1.14619 1.43199 1.04030 1.06047 1.57487 1.17908 0.83744 0.95399 0.95321 1.21050 0.96761 0.97896 0.98175 1.20762 0.91770 0.98320 0.96533 1.20029 0.92919 1.03351 1.02715 1.18218 0.86575 0.75792 0.73695 1.93231 1.96907 1.53841 1.71864 1.93210 1.70985 1.62592 1.88788 1.93195 1.93232 1.91744 1.37629 1.20834 0.96126 0.93171 0.96648 1.21240 0.92518 1.00765 0.98313 0.92324 0.92998 0.93029 0.80988 0.80758 0.84061 0.83872 0.83578 0.83215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.60 13.29 55.43 0.74 -24.86 16 2 C 0.07 1.96 5.46 -17.82 -0.10 1.87 16 3 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.53 -14.45 9.13 -34.43 -0.31 -14.77 16 8 H 0.07 1.78 7.71 -52.49 -0.40 1.37 16 9 C 0.08 2.15 4.95 36.01 0.18 2.33 16 10 S -0.07 -1.46 20.57 -107.50 -2.21 -3.67 16 11 C 0.22 4.43 7.81 -88.49 -0.69 3.74 16 12 N -0.48 -9.93 10.60 -13.38 -0.14 -10.07 16 13 C -0.01 -0.11 11.84 -17.79 -0.21 -0.32 16 14 C -0.07 -0.92 11.32 -16.20 -0.18 -1.10 16 15 N -0.42 -6.63 2.91 -60.74 -0.18 -6.81 16 16 C 0.17 2.21 5.86 -83.59 -0.49 1.72 16 17 C -0.12 -1.23 9.70 -39.41 -0.38 -1.62 16 18 C -0.06 -0.50 9.39 -39.61 -0.37 -0.87 16 19 C -0.19 -1.84 5.46 -104.59 -0.57 -2.41 16 20 C 0.51 4.88 3.36 36.00 0.12 5.00 16 21 F -0.18 -1.72 17.30 2.25 0.04 -1.68 16 22 F -0.17 -1.77 16.45 2.25 0.04 -1.74 16 23 F -0.18 -1.71 16.46 2.25 0.04 -1.67 16 24 C -0.05 -0.50 9.39 -39.61 -0.37 -0.87 16 25 C -0.11 -1.34 8.87 -39.40 -0.35 -1.69 16 26 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 27 H 0.05 1.45 8.14 -51.92 -0.42 1.03 16 28 H 0.05 1.45 8.14 -51.91 -0.42 1.03 16 29 H 0.17 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.18 1.64 8.06 -52.49 -0.42 1.21 16 31 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.14 0.96 7.60 -52.49 -0.40 0.56 16 33 H 0.15 1.22 7.59 -52.49 -0.40 0.82 16 34 H 0.15 1.96 7.58 -52.49 -0.40 1.56 16 LS Contribution 330.23 15.07 4.98 4.98 Total: -1.00 -30.90 330.23 -8.31 -39.21 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -2.85 Total: -0.55 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -3.73 Total: -9.00 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.42 Total: -41.74 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.11 Total: -5.09 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.90 -8.31 -39.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111382572.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.520 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds