Wall clock time and date at job start Tue Mar 31 2020 15:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99961 * 2 1 4 4 H 1.48496 * 109.47250 * 269.99584 * 3 2 1 5 5 H 1.48504 * 109.47084 * 30.00363 * 3 2 1 6 6 H 1.48499 * 109.46987 * 149.99720 * 3 2 1 7 7 C 1.37881 * 120.00427 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00758 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99442 * 0.02562 * 7 2 1 10 10 S 1.80993 * 109.46968 * 179.97438 * 9 7 2 11 11 C 1.76197 * 100.00318 * 179.97438 * 10 9 7 12 12 N 1.31283 * 125.81567 * 0.17635 * 11 10 9 13 13 C 1.34380 * 109.35378 * 180.28979 * 12 11 10 14 14 C 1.34398 * 108.40603 * 359.72136 * 13 12 11 15 15 N 1.36381 * 125.82534 * 179.97438 * 11 10 9 16 16 C 1.40195 * 126.53615 * 359.97438 * 15 11 10 17 17 C 1.38826 * 120.07020 * 129.70748 * 16 15 11 18 18 C 1.38120 * 119.93658 * 179.97438 * 17 16 15 19 19 C 1.38285 * 120.06636 * 359.97438 * 18 17 16 20 20 C 1.50694 * 119.93413 * 179.74387 * 19 18 17 21 21 F 1.39908 * 109.46922 * 90.00014 * 20 19 18 22 22 F 1.39897 * 109.47235 * 209.99938 * 20 19 18 23 23 F 1.39898 * 109.47361 * 330.00484 * 20 19 18 24 24 C 1.38280 * 120.12709 * 0.02562 * 19 18 17 25 25 C 1.38123 * 120.06843 * 0.02562 * 24 19 18 26 26 H 0.96999 * 120.00273 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47481 * 59.99746 * 9 7 2 28 28 H 1.09004 * 109.46755 * 299.99598 * 9 7 2 29 29 H 1.07996 * 125.79653 * 179.69863 * 13 12 11 30 30 H 1.07998 * 126.52425 * 179.97438 * 14 13 12 31 31 H 1.08000 * 120.03364 * 0.02562 * 17 16 15 32 32 H 1.08000 * 119.97115 * 180.02562 * 18 17 16 33 33 H 1.07996 * 119.96164 * 180.02562 * 24 19 18 34 34 H 1.07997 * 120.02815 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4271 -3.8749 0.0005 11 6 1.3072 -5.2351 0.0013 12 7 -0.0030 -5.1515 -0.0015 13 6 -0.5282 -6.3884 0.0066 14 6 0.4797 -7.2774 0.0086 15 7 1.6534 -6.5542 0.0011 16 6 2.9548 -7.0755 -0.0003 17 6 3.3162 -8.0466 0.9237 18 6 4.5989 -8.5586 0.9195 19 6 5.5228 -8.1054 -0.0042 20 6 6.9232 -8.6619 -0.0024 21 9 6.9816 -9.7802 -0.8411 22 9 7.8134 -7.6862 -0.4635 23 9 7.2746 -9.0362 1.2990 24 6 5.1658 -7.1382 -0.9258 25 6 3.8848 -6.6216 -0.9258 26 1 -0.4850 0.8400 0.0004 27 1 0.6246 -2.5572 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 -1.5814 -6.6274 0.0111 30 1 0.3877 -8.3534 0.0150 31 1 2.5947 -8.4019 1.6446 32 1 4.8805 -9.3144 1.6378 33 1 5.8893 -6.7865 -1.6463 34 1 3.6065 -5.8666 -1.6461 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111382572.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:01 Heat of formation + Delta-G solvation = -79.253583 kcal Electronic energy + Delta-G solvation = -24157.831238 eV Core-core repulsion = 19960.364193 eV Total energy + Delta-G solvation = -4197.467045 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.19621 -48.71027 -48.65676 -43.16006 -40.40657 -35.57064 -35.26134 -32.46955 -31.64529 -30.85625 -30.40992 -26.94407 -25.35158 -24.40221 -23.90351 -22.42300 -22.00858 -19.97661 -19.51618 -19.49536 -19.39007 -18.50268 -17.22177 -16.99980 -16.50743 -16.03195 -15.83694 -15.60567 -15.45050 -15.37922 -15.15206 -15.10181 -14.93020 -14.81141 -14.79009 -14.55891 -14.46257 -14.36832 -14.20467 -14.01286 -12.81829 -12.75322 -12.67833 -12.58298 -12.41105 -11.64442 -11.58166 -11.28961 -11.06502 -10.80504 -10.37961 -10.29797 -10.01463 -8.36659 -8.32367 -6.49757 -0.57441 0.02796 0.39554 0.83918 1.41692 1.43831 1.47576 1.55215 1.59716 1.78671 1.98697 2.18544 2.37123 2.64826 2.94791 3.01992 3.36891 3.59949 3.62900 3.74159 3.96400 4.07040 4.29203 4.38159 4.47986 4.70780 4.73784 4.82623 4.92947 4.94358 5.04796 5.19391 5.35174 5.53450 5.62096 5.81596 5.99874 6.58991 6.85520 7.19541 8.79779 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.003215 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.661767 B = 8706.413065 C =10342.655728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.088 3.912 10 S -0.042 6.042 11 C 0.184 3.816 12 N -0.524 5.524 13 C -0.038 4.038 14 C -0.029 4.029 15 N -0.412 5.412 16 C 0.136 3.864 17 C -0.109 4.109 18 C -0.045 4.045 19 C -0.185 4.185 20 C 0.517 3.483 21 F -0.176 7.176 22 F -0.179 7.179 23 F -0.175 7.175 24 C -0.047 4.047 25 C -0.122 4.122 26 H 0.271 0.729 27 H 0.016 0.984 28 H 0.015 0.985 29 H 0.199 0.801 30 H 0.228 0.772 31 H 0.163 0.837 32 H 0.174 0.826 33 H 0.162 0.838 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.244 -22.526 0.426 25.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.585 4.585 8 H 0.090 0.910 9 C -0.060 4.060 10 S 0.189 5.811 11 C -0.184 4.184 12 N -0.246 5.246 13 C -0.186 4.186 14 C -0.160 4.160 15 N -0.096 5.096 16 C 0.045 3.955 17 C -0.128 4.128 18 C -0.063 4.063 19 C -0.187 4.187 20 C 0.463 3.537 21 F -0.158 7.158 22 F -0.160 7.160 23 F -0.156 7.156 24 C -0.066 4.066 25 C -0.142 4.142 26 H 0.080 0.920 27 H 0.035 0.965 28 H 0.033 0.967 29 H 0.216 0.784 30 H 0.244 0.756 31 H 0.180 0.820 32 H 0.191 0.809 33 H 0.179 0.821 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.920 -21.718 0.418 24.777 hybrid contribution -1.029 0.294 -0.137 1.079 sum 10.891 -21.423 0.282 24.035 Atomic orbital electron populations 1.70115 1.08011 1.28676 1.49194 1.25980 0.95816 1.03254 0.93463 0.85219 0.78527 0.77049 0.78902 1.19222 1.20238 1.18366 1.20993 0.93658 0.89737 1.54136 0.90964 1.20775 0.94345 0.91975 0.98895 1.84909 1.09858 0.93708 1.92579 1.25631 0.95161 0.88462 1.09176 1.70916 1.05130 1.27214 1.21385 1.22953 1.01331 0.87175 1.07093 1.23533 0.82411 1.00226 1.09866 1.43298 1.05739 1.04709 1.55823 1.18231 0.82803 0.97209 0.97264 1.21252 0.97665 0.96510 0.97384 1.21100 0.90820 0.98099 0.96292 1.20170 0.93258 1.02821 1.02457 1.18103 0.86232 0.75656 0.73707 1.93239 1.96880 1.53778 1.71873 1.93208 1.71126 1.62807 1.88851 1.93203 1.93202 1.91706 1.37497 1.20961 0.95502 0.93042 0.97082 1.21188 0.93441 1.01030 0.98552 0.92013 0.96525 0.96658 0.78449 0.75586 0.81957 0.80854 0.82093 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.67 13.29 21.45 0.28 -55.38 16 2 C 0.02 0.94 5.46 84.66 0.46 1.40 16 3 Si 0.98 43.30 29.54 68.60 2.03 45.32 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.55 -31.14 9.13 25.60 0.23 -30.91 16 8 H 0.07 3.93 7.71 -2.91 -0.02 3.91 16 9 C 0.09 4.93 4.95 71.24 0.35 5.28 16 10 S -0.04 -1.86 20.57 -56.49 -1.16 -3.02 16 11 C 0.18 7.46 7.81 179.60 1.40 8.86 16 12 N -0.52 -22.63 10.60 -196.24 -2.08 -24.71 16 13 C -0.04 -1.19 11.84 83.42 0.99 -0.20 16 14 C -0.03 -0.71 11.32 82.87 0.94 0.22 16 15 N -0.41 -12.50 2.91 -346.08 -1.01 -13.50 16 16 C 0.14 3.33 5.86 38.09 0.22 3.55 16 17 C -0.11 -1.88 9.70 22.38 0.22 -1.66 16 18 C -0.04 -0.64 9.39 22.25 0.21 -0.43 16 19 C -0.19 -3.10 5.46 -19.85 -0.11 -3.21 16 20 C 0.52 8.43 3.36 71.23 0.24 8.67 16 21 F -0.18 -2.94 17.30 44.97 0.78 -2.16 16 22 F -0.18 -3.25 16.45 44.97 0.74 -2.51 16 23 F -0.17 -2.83 16.46 44.97 0.74 -2.09 16 24 C -0.05 -0.89 9.39 22.25 0.21 -0.68 16 25 C -0.12 -2.93 8.87 22.38 0.20 -2.73 16 26 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 27 H 0.02 1.00 8.14 -2.40 -0.02 0.98 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.91 16 29 H 0.20 4.78 8.06 -2.91 -0.02 4.76 16 30 H 0.23 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.17 1.46 7.60 -2.91 -0.02 1.44 16 33 H 0.16 2.44 7.59 -2.91 -0.02 2.42 16 34 H 0.13 3.59 7.58 -2.91 -0.02 3.57 16 Total: -1.00 -71.40 330.23 7.04 -64.36 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.15 Total: 5.52 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 5.57 Total: -11.83 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -2.80 Total: -93.60 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 2.26 Total: -6.76 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -1.86 SS G_CDS: -1.16 Total: -3.02 kcal Total: -71.40 7.04 -64.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111382572.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.893 kcal (2) G-P(sol) polarization free energy of solvation -71.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds