Wall clock time and date at job start Tue Mar 31 2020 15:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37098 * 120.00098 * 2 1 4 4 H 1.07997 * 120.00474 * 142.82471 * 3 2 1 5 5 C 1.38955 * 119.99371 * 322.82395 * 3 2 1 6 6 N 1.31418 * 119.99331 * 158.40611 * 5 3 2 7 7 Si 1.86791 * 120.00496 * 338.40778 * 5 3 2 8 8 H 1.48502 * 109.47248 * 95.72184 * 7 5 3 9 9 H 1.48500 * 109.47429 * 215.72071 * 7 5 3 10 10 H 1.48496 * 109.47072 * 335.72241 * 7 5 3 11 11 C 1.34781 * 119.99945 * 179.97438 * 2 1 3 12 12 O 1.21296 * 119.99526 * 180.02562 * 11 2 1 13 13 C 1.50689 * 120.00224 * 0.02562 * 11 2 1 14 14 C 1.53000 * 109.47267 * 180.02562 * 13 11 2 15 15 O 1.42906 * 109.47120 * 179.97438 * 14 13 11 16 16 C 1.35921 * 116.99562 * 179.97438 * 15 14 13 17 17 C 1.38741 * 120.04805 * 0.25475 * 16 15 14 18 18 C 1.38120 * 119.96046 * 180.25169 * 17 16 15 19 19 C 1.38387 * 120.04196 * 359.49202 * 18 17 16 20 20 Cl 1.73599 * 119.95868 * 180.23202 * 19 18 17 21 21 C 1.38351 * 120.08378 * 0.25582 * 19 18 17 22 22 C 1.38161 * 120.04287 * 359.97438 * 21 19 18 23 23 N 1.48003 * 120.02476 * 179.97438 * 22 21 19 24 24 O 1.21810 * 119.99550 * 0.02562 * 23 22 21 25 25 O 1.21796 * 120.00390 * 180.02562 * 23 22 21 26 26 H 1.08998 * 109.46953 * 265.13297 * 1 2 3 27 27 H 1.09000 * 109.47403 * 25.13939 * 1 2 3 28 28 H 1.09006 * 109.47023 * 145.14119 * 1 2 3 29 29 H 0.97003 * 119.99786 * 179.97438 * 6 5 3 30 30 H 1.08998 * 109.47617 * 59.99307 * 13 11 2 31 31 H 1.09002 * 109.47320 * 299.99533 * 13 11 2 32 32 H 1.08998 * 109.47293 * 59.99818 * 14 13 11 33 33 H 1.09004 * 109.46886 * 299.99665 * 14 13 11 34 34 H 1.07999 * 120.02183 * 0.02562 * 17 16 15 35 35 H 1.08003 * 119.98242 * 179.77015 * 18 17 16 36 36 H 1.07999 * 119.97946 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2824 0.5651 5 6 1.6674 2.2683 -0.7272 6 7 2.0432 3.4890 -0.4176 7 14 0.4840 1.9866 -2.1447 8 1 -0.9113 2.1585 -1.6663 9 1 0.7616 2.9682 -3.2239 10 1 0.6608 0.6093 -2.6708 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3855 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0018 15 8 1.6652 -4.8728 0.0024 16 6 2.4056 -6.0127 0.0030 17 6 3.7911 -5.9411 0.0084 18 6 4.5417 -7.1005 0.0038 19 6 3.9126 -8.3331 0.0044 20 17 4.8581 -9.7890 0.0047 21 6 2.5310 -8.4066 0.0043 22 6 1.7768 -7.2490 0.0042 23 7 0.2989 -7.3281 0.0035 24 8 -0.2529 -8.4141 0.0036 25 8 -0.3657 -6.3074 0.0029 26 1 -0.3633 -0.0872 1.0239 27 1 -0.3634 0.9303 -0.4366 28 1 -0.3633 -0.8433 -0.5874 29 1 1.7062 4.2437 -0.9254 30 1 0.7590 -2.5303 -0.8896 31 1 0.7585 -2.5299 0.8903 32 1 3.0057 -3.5770 0.8922 33 1 3.0070 -3.5778 -0.8878 34 1 4.2825 -4.9794 0.0125 35 1 5.6203 -7.0452 0.0042 36 1 2.0418 -9.3694 0.0052 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116740992.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:41 Heat of formation + Delta-G solvation = -38.202767 kcal Electronic energy + Delta-G solvation = -24908.602384 eV Core-core repulsion = 20809.586457 eV Total energy + Delta-G solvation = -4099.015928 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.32714 -40.68216 -39.02763 -38.31204 -36.87713 -36.52025 -35.01157 -32.71254 -32.30312 -31.70275 -30.24165 -26.76406 -26.60391 -25.90568 -24.07275 -22.82216 -22.25679 -19.89910 -18.91608 -18.69538 -18.32912 -17.67522 -17.18397 -16.71516 -16.53481 -16.36376 -15.94100 -15.52426 -15.12258 -14.76046 -14.14971 -14.01778 -13.69802 -13.18959 -13.07611 -12.75524 -12.57468 -12.44079 -12.18943 -11.87334 -11.69150 -11.62487 -11.60303 -11.50725 -11.14698 -11.06695 -10.91024 -10.77061 -10.44293 -10.20603 -10.01518 -9.19781 -8.96179 -8.72358 -7.88084 -6.49863 -4.08226 -0.43492 0.34520 1.06015 1.08054 1.55466 2.44140 2.67326 2.96655 3.15383 3.19381 3.54684 3.83725 3.99422 4.05534 4.14345 4.26418 4.44219 4.68523 4.85232 4.88152 4.92115 4.97955 5.23117 5.27083 5.30598 5.51309 5.60812 5.71222 5.82859 5.88892 6.08746 6.20817 6.23593 6.68694 7.41488 7.58079 8.14958 8.35501 8.81964 9.19049 9.59309 10.61693 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020752 B = 0.002644 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.914475 B =10586.497234 C =11602.535431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.462 5.462 3 C -0.321 4.321 4 H 0.107 0.893 5 C 0.060 3.940 6 N -0.860 5.860 7 Si 0.882 3.118 8 H -0.274 1.274 9 H -0.287 1.287 10 H -0.264 1.264 11 C 0.464 3.536 12 O -0.573 6.573 13 C -0.135 4.135 14 C 0.068 3.932 15 O -0.278 6.278 16 C 0.214 3.786 17 C -0.199 4.199 18 C -0.015 4.015 19 C -0.084 4.084 20 Cl -0.045 7.045 21 C -0.012 4.012 22 C -0.078 4.078 23 N 0.037 4.963 24 O -0.181 6.181 25 O -0.124 6.124 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.275 0.725 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.168 0.832 35 H 0.156 0.844 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.365 -22.893 0.294 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.184 5.184 3 C -0.448 4.448 4 H 0.124 0.876 5 C -0.147 4.147 6 N -0.496 5.496 7 Si 0.709 3.291 8 H -0.201 1.201 9 H -0.214 1.214 10 H -0.189 1.189 11 C 0.253 3.747 12 O -0.456 6.456 13 C -0.175 4.175 14 C -0.006 4.006 15 O -0.188 6.188 16 C 0.163 3.837 17 C -0.218 4.218 18 C -0.034 4.034 19 C -0.111 4.111 20 Cl -0.016 7.016 21 C -0.032 4.032 22 C -0.163 4.163 23 N 0.556 4.444 24 O -0.390 6.390 25 O -0.347 6.347 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.185 0.815 35 H 0.174 0.826 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.529 -22.738 0.265 22.880 hybrid contribution -0.838 0.013 -0.784 1.147 sum 1.691 -22.725 -0.519 22.794 Atomic orbital electron populations 1.22079 0.83012 1.01905 1.01419 1.43636 1.04285 1.05563 1.64868 1.19053 1.10349 0.85270 1.30086 0.87578 1.25387 0.97450 0.94743 0.97100 1.69754 1.43563 0.98137 1.38123 0.86900 0.80254 0.79077 0.82871 1.20077 1.21353 1.18855 1.19821 0.87929 0.84329 0.82666 1.90563 1.13716 1.87041 1.54284 1.21499 0.98901 0.91851 1.05283 1.22884 0.94994 0.79101 1.03658 1.86365 1.35177 1.12646 1.84576 1.18756 0.90503 0.85843 0.88639 1.21520 0.91053 1.01322 1.07917 1.21334 1.01853 0.89509 0.90677 1.20464 0.90829 0.89151 1.10700 1.98405 1.71330 1.34725 1.97118 1.20652 0.91955 0.98170 0.92424 1.20302 0.80760 0.93285 1.22000 1.43193 1.02568 1.00699 0.97961 1.94529 1.72965 1.16394 1.55064 1.94636 1.63548 1.24907 1.51652 0.92579 0.91469 0.92313 0.91421 0.88529 0.88539 0.90078 0.90083 0.81454 0.82613 0.81580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.10 8.78 59.85 0.53 1.63 16 2 N -0.46 -10.65 2.59 -122.20 -0.32 -10.97 16 3 C -0.32 -8.78 9.37 -14.93 -0.14 -8.92 16 4 H 0.11 3.27 7.90 -52.49 -0.41 2.85 16 5 C 0.06 1.60 5.29 -17.46 -0.09 1.51 16 6 N -0.86 -24.24 13.96 55.50 0.77 -23.46 16 7 Si 0.88 19.89 24.96 -169.99 -4.24 15.65 16 8 H -0.27 -5.74 6.69 56.52 0.38 -5.36 16 9 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 11 C 0.46 9.88 7.63 -10.99 -0.08 9.79 16 12 O -0.57 -14.03 15.85 5.54 0.09 -13.94 16 13 C -0.13 -2.07 4.69 -27.89 -0.13 -2.20 16 14 C 0.07 0.91 4.03 37.16 0.15 1.06 16 15 O -0.28 -3.65 8.15 -41.62 -0.34 -3.99 16 16 C 0.21 2.43 6.67 -39.22 -0.26 2.17 16 17 C -0.20 -1.74 9.04 -39.44 -0.36 -2.10 16 18 C -0.01 -0.11 9.82 -39.57 -0.39 -0.49 16 19 C -0.08 -0.65 6.32 -39.48 -0.25 -0.90 16 20 Cl -0.04 -0.31 28.95 -51.86 -1.50 -1.81 16 21 C -0.01 -0.11 9.33 -39.57 -0.37 -0.48 16 22 C -0.08 -0.91 6.86 -79.81 -0.55 -1.45 16 23 N 0.04 0.51 4.45 34.03 0.15 0.66 16 24 O -0.18 -2.53 18.45 -29.46 -0.54 -3.08 16 25 O -0.12 -1.93 17.24 -36.49 -0.63 -2.56 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.34 3.42 -51.93 -0.18 1.16 16 28 H 0.06 0.90 6.64 -51.93 -0.34 0.56 16 29 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.10 1.37 7.41 -51.93 -0.38 0.99 16 31 H 0.10 1.33 8.11 -51.93 -0.42 0.91 16 32 H 0.08 1.04 7.61 -51.93 -0.40 0.64 16 33 H 0.08 1.06 7.63 -51.93 -0.40 0.66 16 34 H 0.17 1.32 6.30 -52.49 -0.33 0.99 16 35 H 0.16 0.70 8.06 -52.48 -0.42 0.28 16 36 H 0.17 1.28 7.61 -52.49 -0.40 0.88 16 LS Contribution 330.48 15.07 4.98 4.98 Total: -1.00 -31.85 330.48 -6.79 -38.64 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -3.27 Total: 0.26 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.94 Total: -0.40 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.61 Total: -33.77 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -1.42 Total: -23.56 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.24 Total: 15.65 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.50 Total: -1.81 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.85 -6.79 -38.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116740992.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.440 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds