Wall clock time and date at job start Tue Mar 31 2020 15:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37098 * 120.00098 * 2 1 4 4 H 1.07997 * 120.00474 * 142.82471 * 3 2 1 5 5 C 1.38955 * 119.99371 * 322.82395 * 3 2 1 6 6 N 1.31418 * 119.99331 * 158.40611 * 5 3 2 7 7 Si 1.86791 * 120.00496 * 338.40778 * 5 3 2 8 8 H 1.48502 * 109.47248 * 95.72184 * 7 5 3 9 9 H 1.48500 * 109.47429 * 215.72071 * 7 5 3 10 10 H 1.48496 * 109.47072 * 335.72241 * 7 5 3 11 11 C 1.34781 * 119.99945 * 179.97438 * 2 1 3 12 12 O 1.21296 * 119.99526 * 180.02562 * 11 2 1 13 13 C 1.50689 * 120.00224 * 0.02562 * 11 2 1 14 14 C 1.53000 * 109.47267 * 180.02562 * 13 11 2 15 15 O 1.42906 * 109.47120 * 179.97438 * 14 13 11 16 16 C 1.35921 * 116.99562 * 179.97438 * 15 14 13 17 17 C 1.38741 * 120.04805 * 0.25475 * 16 15 14 18 18 C 1.38120 * 119.96046 * 180.25169 * 17 16 15 19 19 C 1.38387 * 120.04196 * 359.49202 * 18 17 16 20 20 Cl 1.73599 * 119.95868 * 180.23202 * 19 18 17 21 21 C 1.38351 * 120.08378 * 0.25582 * 19 18 17 22 22 C 1.38161 * 120.04287 * 359.97438 * 21 19 18 23 23 N 1.48003 * 120.02476 * 179.97438 * 22 21 19 24 24 O 1.21810 * 119.99550 * 0.02562 * 23 22 21 25 25 O 1.21796 * 120.00390 * 180.02562 * 23 22 21 26 26 H 1.08998 * 109.46953 * 265.13297 * 1 2 3 27 27 H 1.09000 * 109.47403 * 25.13939 * 1 2 3 28 28 H 1.09006 * 109.47023 * 145.14119 * 1 2 3 29 29 H 0.97003 * 119.99786 * 179.97438 * 6 5 3 30 30 H 1.08998 * 109.47617 * 59.99307 * 13 11 2 31 31 H 1.09002 * 109.47320 * 299.99533 * 13 11 2 32 32 H 1.08998 * 109.47293 * 59.99818 * 14 13 11 33 33 H 1.09004 * 109.46886 * 299.99665 * 14 13 11 34 34 H 1.07999 * 120.02183 * 0.02562 * 17 16 15 35 35 H 1.08003 * 119.98242 * 179.77015 * 18 17 16 36 36 H 1.07999 * 119.97946 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0659 1.2824 0.5651 5 6 1.6674 2.2683 -0.7272 6 7 2.0432 3.4890 -0.4176 7 14 0.4840 1.9866 -2.1447 8 1 -0.9113 2.1585 -1.6663 9 1 0.7616 2.9682 -3.2239 10 1 0.6608 0.6093 -2.6708 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3855 -2.4723 0.0005 14 6 2.3797 -3.6352 0.0018 15 8 1.6652 -4.8728 0.0024 16 6 2.4056 -6.0127 0.0030 17 6 3.7911 -5.9411 0.0084 18 6 4.5417 -7.1005 0.0038 19 6 3.9126 -8.3331 0.0044 20 17 4.8581 -9.7890 0.0047 21 6 2.5310 -8.4066 0.0043 22 6 1.7768 -7.2490 0.0042 23 7 0.2989 -7.3281 0.0035 24 8 -0.2529 -8.4141 0.0036 25 8 -0.3657 -6.3074 0.0029 26 1 -0.3633 -0.0872 1.0239 27 1 -0.3634 0.9303 -0.4366 28 1 -0.3633 -0.8433 -0.5874 29 1 1.7062 4.2437 -0.9254 30 1 0.7590 -2.5303 -0.8896 31 1 0.7585 -2.5299 0.8903 32 1 3.0057 -3.5770 0.8922 33 1 3.0070 -3.5778 -0.8878 34 1 4.2825 -4.9794 0.0125 35 1 5.6203 -7.0452 0.0042 36 1 2.0418 -9.3694 0.0052 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116740992.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:40 Heat of formation + Delta-G solvation = -57.387991 kcal Electronic energy + Delta-G solvation = -24909.434318 eV Core-core repulsion = 20809.586457 eV Total energy + Delta-G solvation = -4099.847862 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.29673 -41.57773 -40.58095 -39.23101 -37.59094 -37.50088 -36.80030 -34.23639 -33.51791 -32.87466 -31.12091 -28.26217 -27.67386 -27.37614 -25.39093 -23.65430 -23.28561 -20.90632 -20.38002 -19.77580 -19.27680 -19.04171 -18.66816 -17.90304 -17.60533 -17.35611 -17.19718 -16.85363 -16.22493 -15.91771 -15.44238 -15.02675 -14.90968 -14.56199 -14.26883 -14.11369 -13.89451 -13.58600 -13.43881 -13.34184 -12.72528 -12.68421 -12.65573 -12.53767 -12.36145 -12.23523 -12.22224 -11.98184 -11.82961 -11.76770 -11.08382 -10.91287 -10.48944 -9.74959 -9.71857 -8.53569 -6.17124 -1.30589 -0.36903 0.15345 0.22728 0.86611 1.21283 1.33313 1.45468 1.49722 1.87619 1.95114 2.16905 2.74343 2.93934 3.13832 3.26795 3.52557 3.57470 3.71328 3.88635 3.97646 3.98328 4.25540 4.29759 4.38561 4.55649 4.61054 4.64461 4.70685 4.78086 4.84354 4.92061 5.20623 5.49416 5.77239 6.01375 6.49442 6.50893 6.89280 7.25781 7.78829 8.63239 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020752 B = 0.002644 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.914475 B =10586.497234 C =11602.535431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.480 5.480 3 C -0.338 4.338 4 H 0.048 0.952 5 C 0.010 3.990 6 N -0.910 5.910 7 Si 0.953 3.047 8 H -0.241 1.241 9 H -0.292 1.292 10 H -0.255 1.255 11 C 0.463 3.537 12 O -0.613 6.613 13 C -0.124 4.124 14 C 0.075 3.925 15 O -0.290 6.290 16 C 0.197 3.803 17 C -0.196 4.196 18 C 0.002 3.998 19 C -0.077 4.077 20 Cl -0.031 7.031 21 C -0.010 4.010 22 C -0.092 4.092 23 N 0.038 4.962 24 O -0.180 6.180 25 O -0.167 6.167 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.281 0.719 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.177 0.823 35 H 0.188 0.812 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.710 -25.467 -0.634 25.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.202 5.202 3 C -0.465 4.465 4 H 0.066 0.934 5 C -0.192 4.192 6 N -0.547 5.547 7 Si 0.777 3.223 8 H -0.166 1.166 9 H -0.219 1.219 10 H -0.179 1.179 11 C 0.254 3.746 12 O -0.499 6.499 13 C -0.163 4.163 14 C 0.000 4.000 15 O -0.200 6.200 16 C 0.146 3.854 17 C -0.215 4.215 18 C -0.016 4.016 19 C -0.105 4.105 20 Cl -0.002 7.002 21 C -0.030 4.030 22 C -0.177 4.177 23 N 0.552 4.448 24 O -0.392 6.392 25 O -0.381 6.381 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.194 0.806 35 H 0.205 0.795 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.821 -25.282 -0.643 25.355 hybrid contribution -0.417 0.626 -0.405 0.854 sum 1.405 -24.656 -1.048 24.718 Atomic orbital electron populations 1.22310 0.79994 1.02945 1.03657 1.43776 1.06170 1.04617 1.65639 1.18665 1.09516 0.87863 1.30495 0.93443 1.26198 0.99802 0.93887 0.99308 1.69872 1.45930 0.99286 1.39598 0.85771 0.79258 0.79027 0.78287 1.16599 1.21898 1.17858 1.20771 0.87763 0.85821 0.80287 1.90535 1.15973 1.87988 1.55367 1.21362 0.98847 0.88861 1.07258 1.22687 0.94300 0.79049 1.03927 1.86312 1.35568 1.12818 1.85305 1.18978 0.91442 0.85115 0.89837 1.21659 0.89951 1.02424 1.07515 1.21697 1.03320 0.88473 0.88139 1.20554 0.90446 0.89962 1.09550 1.98422 1.70790 1.34031 1.96975 1.20820 0.92457 0.97836 0.91841 1.20428 0.79110 0.94285 1.23885 1.43501 1.03675 1.00299 0.97321 1.94495 1.73817 1.16367 1.54497 1.94622 1.64590 1.25125 1.53792 0.90395 0.92614 0.88322 0.90969 0.86484 0.86352 0.89893 0.89962 0.80603 0.79456 0.80435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.82 8.78 127.77 1.12 2.95 16 2 N -0.48 -21.96 2.59 -658.89 -1.70 -23.66 16 3 C -0.34 -19.19 9.37 84.04 0.79 -18.40 16 4 H 0.05 3.16 7.90 -2.91 -0.02 3.14 16 5 C 0.01 0.57 5.29 84.93 0.45 1.02 16 6 N -0.91 -53.09 13.96 21.67 0.30 -52.79 16 7 Si 0.95 40.51 24.96 68.60 1.71 42.22 16 8 H -0.24 -8.95 6.69 99.48 0.67 -8.29 16 9 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 11 C 0.46 19.48 7.63 87.65 0.67 20.15 16 12 O -0.61 -30.64 15.85 -3.08 -0.05 -30.69 16 13 C -0.12 -3.51 4.69 29.84 0.14 -3.37 16 14 C 0.07 1.88 4.03 71.98 0.29 2.17 16 15 O -0.29 -7.19 8.15 -71.49 -0.58 -7.77 16 16 C 0.20 4.16 6.67 22.50 0.15 4.31 16 17 C -0.20 -2.97 9.04 22.36 0.20 -2.77 16 18 C 0.00 0.02 9.82 22.28 0.22 0.24 16 19 C -0.08 -0.97 6.32 22.33 0.14 -0.83 16 20 Cl -0.03 -0.34 28.95 -2.72 -0.08 -0.42 16 21 C -0.01 -0.16 9.33 22.28 0.21 0.05 16 22 C -0.09 -1.99 6.86 36.47 0.25 -1.74 16 23 N 0.04 1.04 4.45 -46.25 -0.21 0.84 16 24 O -0.18 -4.90 18.45 18.87 0.35 -4.55 16 25 O -0.17 -5.15 17.24 25.62 0.44 -4.71 16 26 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.06 2.05 3.42 -2.39 -0.01 2.04 16 28 H 0.10 2.59 6.64 -2.38 -0.02 2.58 16 29 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.12 2.91 7.41 -2.39 -0.02 2.89 16 31 H 0.12 2.91 8.11 -2.39 -0.02 2.89 16 32 H 0.08 2.02 7.61 -2.39 -0.02 2.01 16 33 H 0.08 2.02 7.63 -2.38 -0.02 2.01 16 34 H 0.18 2.38 6.30 -2.91 -0.02 2.36 16 35 H 0.19 0.86 8.06 -2.91 -0.02 0.83 16 36 H 0.18 2.34 7.61 -2.91 -0.02 2.32 16 Total: -1.00 -73.82 330.48 5.92 -67.90 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.11 Total: 9.85 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 4.63 Total: 3.78 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -1.61 Total: -75.61 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: 0.16 Total: -47.72 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.71 Total: 42.22 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.42 kcal Total: -73.82 5.92 -67.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116740992.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.513 kcal (2) G-P(sol) polarization free energy of solvation -73.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds