Wall clock time and date at job start Tue Mar 31 2020 15:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47321 * 302.61547 * 3 2 1 5 5 N 1.46497 * 109.47577 * 180.02562 * 4 3 2 6 6 C 1.46501 * 119.99858 * 85.29243 * 5 4 3 7 7 C 1.50696 * 109.47359 * 90.00518 * 6 5 4 8 8 H 1.08005 * 119.99652 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00453 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99936 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00462 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46810 * 60.00009 * 11 9 7 13 13 H 1.48497 * 109.47677 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47311 * 300.00526 * 11 9 7 15 15 C 1.34775 * 119.99927 * 265.29519 * 5 4 3 16 16 O 1.21584 * 120.00036 * 5.30471 * 15 5 4 17 17 C 1.47632 * 120.00127 * 185.30918 * 15 5 4 18 18 C 1.39709 * 120.14393 * 55.95214 * 17 15 5 19 19 C 1.37998 * 119.86164 * 180.02562 * 18 17 15 20 20 F 1.35104 * 119.91502 * 180.02562 * 19 18 17 21 21 C 1.38797 * 120.16051 * 0.02562 * 19 18 17 22 22 Cl 1.73593 * 119.85559 * 179.97438 * 21 19 18 23 23 C 1.38325 * 120.28507 * 0.02562 * 21 19 18 24 24 C 1.38260 * 120.13781 * 359.71840 * 23 21 19 25 25 F 1.35094 * 120.07914 * 180.29801 * 24 23 21 26 26 H 1.09005 * 109.46911 * 182.62127 * 3 2 1 27 27 H 1.08998 * 109.47569 * 62.61979 * 3 2 1 28 28 H 1.09000 * 109.47195 * 59.99966 * 4 3 2 29 29 H 1.09005 * 109.46942 * 300.00387 * 4 3 2 30 30 H 1.09007 * 109.46942 * 210.00156 * 6 5 4 31 31 H 1.08991 * 109.47255 * 329.99863 * 6 5 4 32 32 H 0.97000 * 119.99966 * 180.02562 * 10 9 7 33 33 H 1.07994 * 120.06357 * 359.97438 * 18 17 15 34 34 H 1.08006 * 119.92609 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.7766 1.2150 5 7 4.5834 -0.7755 1.2154 6 6 5.3148 0.3462 1.8096 7 6 5.5659 0.0656 3.2688 8 1 5.2153 -0.8559 3.7095 9 6 6.2432 0.9852 4.0411 10 7 6.6697 2.1077 3.5044 11 14 6.5539 0.6377 5.8500 12 1 7.3566 -0.6044 5.9846 13 1 7.2954 1.7746 6.4523 14 1 5.2561 0.4668 6.5512 15 6 5.2582 -1.8063 0.6691 16 8 4.6550 -2.6896 0.0909 17 6 6.7298 -1.8630 0.7727 18 6 7.3473 -1.8152 2.0250 19 6 8.7233 -1.8681 2.1150 20 9 9.3215 -1.8226 3.3255 21 6 9.4941 -1.9681 0.9651 22 17 11.2244 -2.0334 1.0875 23 6 8.8894 -2.0147 -0.2781 24 6 7.5115 -1.9679 -0.3821 25 9 6.9219 -2.0197 -1.5965 26 1 2.9708 1.0275 0.0470 27 1 2.9716 -0.4718 -0.9125 28 1 2.7555 -1.8034 1.1681 29 1 2.7548 -0.3041 2.1275 30 1 6.2673 0.4724 1.2947 31 1 4.7251 1.2575 1.7111 32 1 7.1465 2.7545 4.0477 33 1 6.7489 -1.7362 2.9206 34 1 9.4948 -2.0921 -1.1692 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121366993.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:45 Heat of formation + Delta-G solvation = -77.232031 kcal Electronic energy + Delta-G solvation = -25520.567574 eV Core-core repulsion = 21308.771695 eV Total energy + Delta-G solvation = -4211.795879 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.85812 -48.69187 -39.92493 -38.21697 -36.75967 -36.45845 -35.42721 -33.13357 -31.87140 -30.55551 -29.88030 -27.48879 -25.01539 -23.50145 -23.27200 -22.35525 -19.43551 -17.74985 -17.73849 -17.26131 -17.17907 -16.69935 -16.35951 -15.81986 -15.52186 -15.18802 -14.79976 -14.74464 -14.45484 -14.33077 -13.93208 -13.65146 -13.48667 -13.00342 -12.76189 -12.64947 -12.45493 -12.40936 -12.23102 -11.77606 -11.76723 -11.54401 -11.19948 -11.13086 -11.04488 -10.89547 -10.74199 -10.32559 -10.01340 -9.61696 -8.94219 -8.76899 -8.44959 -8.14328 -6.40411 -4.48776 0.67374 1.06561 1.87336 2.72848 2.87532 2.90335 3.13881 3.19956 3.22760 3.32774 3.54852 4.12549 4.16057 4.18702 4.26778 4.68412 4.78649 4.94371 5.07371 5.19261 5.24095 5.46181 5.59917 5.64478 5.87549 5.96121 5.99913 6.14197 6.24540 6.38931 6.73063 6.92879 7.17617 7.49407 7.65934 7.77455 7.89532 8.44295 8.59903 9.17997 10.65517 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010022 B = 0.005651 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.135182 B = 4953.850474 C = 7195.445346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.221 3.779 3 C -0.046 4.046 4 C 0.126 3.874 5 N -0.585 5.585 6 C 0.232 3.768 7 C -0.552 4.552 8 H 0.066 0.934 9 C 0.075 3.925 10 N -0.877 5.877 11 Si 0.887 3.113 12 H -0.269 1.269 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.564 3.436 16 O -0.546 6.546 17 C -0.120 4.120 18 C -0.048 4.048 19 C 0.096 3.904 20 F -0.120 7.120 21 C -0.034 4.034 22 Cl -0.046 7.046 23 C -0.138 4.138 24 C 0.141 3.859 25 F -0.121 7.121 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.270 0.730 33 H 0.187 0.813 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.726 -4.795 -5.125 9.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.097 4.097 3 C -0.087 4.087 4 C 0.001 3.999 5 N -0.315 5.315 6 C 0.113 3.887 7 C -0.590 4.590 8 H 0.084 0.916 9 C -0.131 4.131 10 N -0.513 5.513 11 Si 0.713 3.287 12 H -0.194 1.194 13 H -0.209 1.209 14 H -0.199 1.199 15 C 0.351 3.649 16 O -0.426 6.426 17 C -0.124 4.124 18 C -0.067 4.067 19 C 0.075 3.925 20 F -0.099 7.099 21 C -0.062 4.062 22 Cl -0.017 7.017 23 C -0.158 4.158 24 C 0.120 3.880 25 F -0.099 7.099 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.203 0.797 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.960 -5.034 -5.362 8.353 hybrid contribution 1.016 0.224 1.086 1.504 sum 4.976 -4.810 -4.276 8.135 Atomic orbital electron populations 1.81187 1.13048 1.09382 1.08966 1.29064 0.95074 0.92684 0.92892 1.19762 0.81412 1.04868 1.02694 1.21194 0.80663 1.01386 0.96680 1.48147 1.05610 1.21642 1.56077 1.19605 0.92389 0.83413 0.93333 1.21378 1.38209 1.05137 0.94294 0.91566 1.24897 0.94832 0.94636 0.98727 1.69881 1.36288 1.08236 1.36868 0.86699 0.78840 0.78632 0.84497 1.19364 1.20874 1.19877 1.17840 0.86039 0.82181 0.78825 1.90772 1.69319 1.39020 1.43464 1.19771 0.94812 1.05499 0.92314 1.21915 0.92275 0.92644 0.99857 1.17204 0.90529 1.04888 0.79835 1.91562 1.83449 1.93655 1.41198 1.20768 0.85787 1.06199 0.93463 1.98382 1.08263 1.96602 1.98423 1.20582 0.92706 1.05278 0.97203 1.17290 0.89781 1.00939 0.79982 1.91549 1.84091 1.93303 1.40940 0.86823 0.87193 0.89579 0.88912 0.94107 0.93668 0.92036 0.79658 0.82721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.19 18.54 42.15 0.78 -6.41 16 2 C 0.22 3.00 15.43 -20.76 -0.32 2.68 16 3 C -0.05 -0.55 6.03 -29.52 -0.18 -0.73 16 4 C 0.13 1.81 5.38 -4.04 -0.02 1.79 16 5 N -0.59 -9.99 2.46 -176.25 -0.43 -10.42 16 6 C 0.23 4.54 4.75 -5.19 -0.02 4.51 16 7 C -0.55 -11.95 6.47 -34.45 -0.22 -12.17 16 8 H 0.07 1.42 7.20 -52.48 -0.38 1.04 16 9 C 0.08 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.88 -21.56 13.29 55.43 0.74 -20.82 16 11 Si 0.89 18.56 29.54 -169.99 -5.02 13.54 16 12 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 13 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 15 C 0.56 10.16 6.82 -12.43 -0.08 10.08 16 16 O -0.55 -10.75 16.49 5.29 0.09 -10.66 16 17 C -0.12 -2.04 4.43 -104.91 -0.46 -2.51 16 18 C -0.05 -0.83 7.86 -39.12 -0.31 -1.13 16 19 C 0.10 1.58 7.26 -39.46 -0.29 1.29 16 20 F -0.12 -2.09 16.82 2.25 0.04 -2.06 16 21 C -0.03 -0.49 6.33 -39.34 -0.25 -0.74 16 22 Cl -0.05 -0.59 28.60 -51.86 -1.48 -2.07 16 23 C -0.14 -1.84 9.79 -39.54 -0.39 -2.23 16 24 C 0.14 2.17 7.27 -38.97 -0.28 1.89 16 25 F -0.12 -1.90 16.70 2.25 0.04 -1.86 16 26 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.09 1.26 7.36 -51.93 -0.38 0.88 16 29 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 30 H 0.04 0.86 6.77 -51.92 -0.35 0.51 16 31 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 33 H 0.19 3.42 5.19 -52.49 -0.27 3.15 16 34 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 332.36 15.07 5.01 5.01 Total: -1.00 -25.80 332.36 -5.80 -31.60 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -2.63 Total: -0.22 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -2.93 Total: 4.37 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 1.08 Total: -37.65 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.08 Total: -3.92 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.48 Total: -2.07 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -25.80 -5.80 -31.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121366993.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.632 kcal (2) G-P(sol) polarization free energy of solvation -25.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds