Wall clock time and date at job start Tue Mar 31 2020 15:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47321 * 302.61547 * 3 2 1 5 5 N 1.46497 * 109.47577 * 180.02562 * 4 3 2 6 6 C 1.46501 * 119.99858 * 85.29243 * 5 4 3 7 7 C 1.50696 * 109.47359 * 90.00518 * 6 5 4 8 8 H 1.08005 * 119.99652 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00453 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99936 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00462 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46810 * 60.00009 * 11 9 7 13 13 H 1.48497 * 109.47677 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47311 * 300.00526 * 11 9 7 15 15 C 1.34775 * 119.99927 * 265.29519 * 5 4 3 16 16 O 1.21584 * 120.00036 * 5.30471 * 15 5 4 17 17 C 1.47632 * 120.00127 * 185.30918 * 15 5 4 18 18 C 1.39709 * 120.14393 * 55.95214 * 17 15 5 19 19 C 1.37998 * 119.86164 * 180.02562 * 18 17 15 20 20 F 1.35104 * 119.91502 * 180.02562 * 19 18 17 21 21 C 1.38797 * 120.16051 * 0.02562 * 19 18 17 22 22 Cl 1.73593 * 119.85559 * 179.97438 * 21 19 18 23 23 C 1.38325 * 120.28507 * 0.02562 * 21 19 18 24 24 C 1.38260 * 120.13781 * 359.71840 * 23 21 19 25 25 F 1.35094 * 120.07914 * 180.29801 * 24 23 21 26 26 H 1.09005 * 109.46911 * 182.62127 * 3 2 1 27 27 H 1.08998 * 109.47569 * 62.61979 * 3 2 1 28 28 H 1.09000 * 109.47195 * 59.99966 * 4 3 2 29 29 H 1.09005 * 109.46942 * 300.00387 * 4 3 2 30 30 H 1.09007 * 109.46942 * 210.00156 * 6 5 4 31 31 H 1.08991 * 109.47255 * 329.99863 * 6 5 4 32 32 H 0.97000 * 119.99966 * 180.02562 * 10 9 7 33 33 H 1.07994 * 120.06357 * 359.97438 * 18 17 15 34 34 H 1.08006 * 119.92609 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.7766 1.2150 5 7 4.5834 -0.7755 1.2154 6 6 5.3148 0.3462 1.8096 7 6 5.5659 0.0656 3.2688 8 1 5.2153 -0.8559 3.7095 9 6 6.2432 0.9852 4.0411 10 7 6.6697 2.1077 3.5044 11 14 6.5539 0.6377 5.8500 12 1 7.3566 -0.6044 5.9846 13 1 7.2954 1.7746 6.4523 14 1 5.2561 0.4668 6.5512 15 6 5.2582 -1.8063 0.6691 16 8 4.6550 -2.6896 0.0909 17 6 6.7298 -1.8630 0.7727 18 6 7.3473 -1.8152 2.0250 19 6 8.7233 -1.8681 2.1150 20 9 9.3215 -1.8226 3.3255 21 6 9.4941 -1.9681 0.9651 22 17 11.2244 -2.0334 1.0875 23 6 8.8894 -2.0147 -0.2781 24 6 7.5115 -1.9679 -0.3821 25 9 6.9219 -2.0197 -1.5965 26 1 2.9708 1.0275 0.0470 27 1 2.9716 -0.4718 -0.9125 28 1 2.7555 -1.8034 1.1681 29 1 2.7548 -0.3041 2.1275 30 1 6.2673 0.4724 1.2947 31 1 4.7251 1.2575 1.7111 32 1 7.1465 2.7545 4.0477 33 1 6.7489 -1.7362 2.9206 34 1 9.4948 -2.0921 -1.1692 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121366993.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:45 Heat of formation + Delta-G solvation = -88.499932 kcal Electronic energy + Delta-G solvation = -25521.056187 eV Core-core repulsion = 21308.771695 eV Total energy + Delta-G solvation = -4212.284492 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.09107 -50.01486 -41.29549 -39.46706 -37.95101 -37.61124 -36.85996 -34.74570 -33.19128 -31.78684 -31.13775 -29.11120 -26.25744 -25.10185 -24.51750 -23.64519 -20.77848 -19.08648 -19.00074 -18.55252 -18.41252 -18.27234 -17.69589 -17.16177 -16.85770 -16.46285 -16.35377 -15.90785 -15.72400 -15.68667 -15.23604 -14.88958 -14.73415 -14.35842 -14.22305 -13.91736 -13.79348 -13.60899 -13.57082 -13.30641 -13.08657 -12.81750 -12.71052 -12.59557 -12.30495 -12.20949 -12.02095 -11.82516 -11.65442 -11.04994 -10.54465 -10.15937 -9.71681 -9.60383 -8.17814 -6.27593 -0.57808 -0.15795 0.73003 1.41755 1.45835 1.51010 1.52711 1.66491 1.79716 2.05264 2.23342 2.44273 2.91438 2.95857 3.12349 3.16055 3.39494 3.54251 3.84765 4.09350 4.13190 4.27319 4.44602 4.55787 4.62474 4.77295 4.82688 4.91182 4.94484 5.03414 5.28766 5.46151 5.64818 5.77887 6.06842 6.40300 6.55961 6.79840 7.09937 7.41502 8.87316 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010022 B = 0.005651 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.135182 B = 4953.850474 C = 7195.445346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.246 3.754 3 C -0.032 4.032 4 C 0.122 3.878 5 N -0.582 5.582 6 C 0.246 3.754 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.040 3.960 10 N -0.907 5.907 11 Si 0.926 3.074 12 H -0.268 1.268 13 H -0.289 1.289 14 H -0.272 1.272 15 C 0.564 3.436 16 O -0.565 6.565 17 C -0.135 4.135 18 C -0.057 4.057 19 C 0.083 3.917 20 F -0.129 7.129 21 C -0.029 4.029 22 Cl -0.026 7.026 23 C -0.116 4.116 24 C 0.139 3.861 25 F -0.121 7.121 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.029 0.971 31 H 0.043 0.957 32 H 0.266 0.734 33 H 0.169 0.831 34 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.648 -5.162 -6.035 10.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.072 4.072 3 C -0.073 4.073 4 C -0.002 4.002 5 N -0.310 5.310 6 C 0.126 3.874 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.163 4.163 10 N -0.545 5.545 11 Si 0.753 3.247 12 H -0.193 1.193 13 H -0.215 1.215 14 H -0.197 1.197 15 C 0.351 3.649 16 O -0.446 6.446 17 C -0.139 4.139 18 C -0.077 4.077 19 C 0.062 3.938 20 F -0.108 7.108 21 C -0.058 4.058 22 Cl 0.003 6.997 23 C -0.135 4.135 24 C 0.119 3.881 25 F -0.099 7.099 26 H 0.149 0.851 27 H 0.139 0.861 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.187 0.813 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 4.868 -5.413 -6.266 9.605 hybrid contribution 0.795 0.263 1.334 1.575 sum 5.663 -5.150 -4.932 9.106 Atomic orbital electron populations 1.81217 1.14304 1.10871 1.10322 1.29174 0.95028 0.91344 0.91605 1.19704 0.80170 1.05563 1.01905 1.21314 0.79116 1.01824 0.97992 1.48061 1.06571 1.20853 1.55548 1.19285 0.92052 0.83894 0.92181 1.21578 1.36756 1.04469 0.95224 0.91715 1.25349 0.95230 0.94734 1.00948 1.69952 1.37893 1.09059 1.37577 0.86074 0.78555 0.78085 0.82021 1.19323 1.21512 1.19702 1.17992 0.86510 0.81902 0.78452 1.90757 1.69845 1.39561 1.44443 1.19775 0.94508 1.06699 0.92939 1.21660 0.92677 0.93971 0.99349 1.17322 0.90519 1.05721 0.80206 1.91533 1.83502 1.93851 1.41903 1.20816 0.86788 1.05089 0.93066 1.98395 1.06465 1.96409 1.98401 1.20886 0.91988 1.02680 0.97977 1.17374 0.90453 1.00868 0.79442 1.91550 1.84270 1.93295 1.40801 0.85095 0.86110 0.89749 0.88658 0.95312 0.93887 0.92438 0.81342 0.79144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.28 18.54 20.01 0.37 -14.91 16 2 C 0.25 6.35 15.43 89.44 1.38 7.73 16 3 C -0.03 -0.72 6.03 28.79 0.17 -0.54 16 4 C 0.12 3.35 5.38 86.38 0.46 3.82 16 5 N -0.58 -19.36 2.46 -829.81 -2.04 -21.40 16 6 C 0.25 9.50 4.75 85.63 0.41 9.90 16 7 C -0.54 -23.29 6.47 25.60 0.17 -23.13 16 8 H 0.06 2.77 7.20 -2.91 -0.02 2.75 16 9 C 0.04 1.84 5.46 84.65 0.46 2.30 16 10 N -0.91 -44.62 13.29 21.45 0.28 -44.34 16 11 Si 0.93 37.93 29.54 68.60 2.03 39.95 16 12 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 13 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 14 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 15 C 0.56 19.89 6.82 86.72 0.59 20.48 16 16 O -0.57 -21.74 16.49 -3.98 -0.07 -21.81 16 17 C -0.14 -4.50 4.43 -20.05 -0.09 -4.59 16 18 C -0.06 -1.97 7.86 22.57 0.18 -1.79 16 19 C 0.08 2.65 7.26 22.35 0.16 2.82 16 20 F -0.13 -4.44 16.82 44.97 0.76 -3.69 16 21 C -0.03 -0.79 6.33 22.42 0.14 -0.65 16 22 Cl -0.03 -0.60 28.60 -2.72 -0.08 -0.68 16 23 C -0.12 -2.77 9.79 22.30 0.22 -2.55 16 24 C 0.14 4.04 7.27 22.66 0.16 4.21 16 25 F -0.12 -3.55 16.70 44.97 0.75 -2.80 16 26 H 0.13 2.54 8.14 -2.38 -0.02 2.52 16 27 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.08 2.38 7.36 -2.39 -0.02 2.37 16 29 H 0.10 2.59 8.11 -2.38 -0.02 2.57 16 30 H 0.03 1.20 6.77 -2.38 -0.02 1.19 16 31 H 0.04 1.70 8.07 -2.39 -0.02 1.68 16 32 H 0.27 12.83 8.31 -92.71 -0.77 12.06 16 33 H 0.17 6.30 5.19 -2.91 -0.02 6.28 16 34 H 0.19 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -54.02 332.36 7.61 -46.42 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: 1.18 Total: 5.26 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 4.42 Total: 17.99 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.38 Total: -80.64 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.07 Total: -21.81 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 1.51 Total: -6.49 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.95 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -54.02 7.61 -46.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121366993.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.083 kcal (2) G-P(sol) polarization free energy of solvation -54.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds