Wall clock time and date at job start Tue Mar 31 2020 15:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00289 * 2 1 4 4 H 1.48507 * 109.47176 * 269.99853 * 3 2 1 5 5 H 1.48502 * 109.47017 * 29.99467 * 3 2 1 6 6 H 1.48497 * 109.47678 * 149.99740 * 3 2 1 7 7 C 1.37874 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00369 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47374 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46973 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46855 * 180.02562 * 11 10 9 13 13 O 1.42095 * 110.54146 * 68.37713 * 12 11 10 14 14 O 1.42094 * 110.54280 * 291.62424 * 12 11 10 15 15 N 1.65604 * 104.44932 * 179.97438 * 12 11 10 16 16 C 1.46028 * 118.61585 * 262.61119 * 15 12 11 17 17 C 1.53591 * 108.61859 * 233.34251 * 16 15 12 18 18 S 1.81687 * 107.84851 * 294.09347 * 17 16 15 19 19 C 1.76493 * 102.55110 * 47.24791 * 18 17 16 20 20 N 1.32764 * 118.73189 * 163.99090 * 19 18 17 21 21 C 1.31838 * 122.10323 * 179.60159 * 20 19 18 22 22 C 1.38013 * 120.78973 * 0.02562 * 21 20 19 23 23 C 1.38665 * 119.26445 * 0.38006 * 22 21 20 24 24 C 1.39329 * 120.94596 * 343.88298 * 19 18 17 25 25 H 0.97001 * 119.99949 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47332 * 59.99513 * 9 7 2 27 27 H 1.09004 * 109.46907 * 300.00195 * 9 7 2 28 28 H 1.08999 * 109.47070 * 60.00308 * 10 9 7 29 29 H 1.08997 * 109.47010 * 299.99853 * 10 9 7 30 30 H 1.08997 * 109.47452 * 60.00281 * 11 10 9 31 31 H 1.09002 * 109.47547 * 299.99541 * 11 10 9 32 32 H 1.08999 * 109.61658 * 353.08232 * 16 15 12 33 33 H 1.09003 * 109.61299 * 113.60463 * 16 15 12 34 34 H 1.08993 * 109.77880 * 53.67880 * 17 16 15 35 35 H 1.08998 * 109.78113 * 174.44966 * 17 16 15 36 36 H 1.08005 * 119.60093 * 179.97438 * 21 20 19 37 37 H 1.08004 * 120.37090 * 180.17139 * 22 21 20 38 38 H 1.08000 * 120.59455 * 179.78104 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9870 0.0012 12 16 2.6590 -6.3659 0.0019 13 8 3.3556 -6.4256 1.2390 14 8 3.3558 -6.4268 -1.2349 15 7 1.7086 -7.7220 0.0033 16 6 1.4426 -8.3884 1.2752 17 6 1.8198 -9.8711 1.1403 18 16 0.6831 -10.6281 -0.0580 19 6 0.7034 -9.4704 -1.3901 20 7 0.2363 -9.8506 -2.5733 21 6 0.2128 -9.0381 -3.6113 22 6 0.6797 -7.7437 -3.5059 23 6 1.1854 -7.3021 -2.2926 24 6 1.1965 -8.1797 -1.2102 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5566 0.8903 28 1 2.8719 -3.6044 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 0.8533 -5.0451 -0.8886 31 1 0.8538 -5.0446 0.8914 32 1 2.0414 -7.9286 2.0614 33 1 0.3839 -8.3009 1.5197 34 1 2.8455 -9.9597 0.7826 35 1 1.7219 -10.3660 2.1065 36 1 -0.1759 -9.3900 -4.5555 37 1 0.6547 -7.0829 -4.3599 38 1 1.5597 -6.2945 -2.1871 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122185853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:04 Heat of formation + Delta-G solvation = -53.591542 kcal Electronic energy + Delta-G solvation = -23649.207142 eV Core-core repulsion = 20130.153579 eV Total energy + Delta-G solvation = -3519.053563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.48704 -38.73173 -38.34852 -37.34810 -36.56223 -34.26937 -33.61901 -32.36086 -30.52978 -29.76378 -25.85493 -25.44035 -25.05001 -23.44351 -22.35504 -20.65935 -19.34766 -19.11529 -18.66929 -18.54951 -17.58924 -17.02656 -16.87367 -16.62875 -16.50601 -15.99148 -15.66325 -15.26696 -14.88031 -14.56056 -14.46874 -14.30836 -14.14931 -13.98302 -13.56848 -13.48404 -13.42019 -13.12592 -13.02575 -12.87430 -12.77009 -12.68643 -12.28083 -12.09101 -11.81194 -11.55054 -11.41240 -11.12949 -11.08870 -10.58687 -10.55124 -9.86467 -8.57809 -8.23890 -6.34904 -1.19347 -0.16164 0.04879 0.26547 1.12147 1.21481 1.40618 1.40831 1.52051 2.36685 2.41122 2.62853 2.77154 2.98543 3.10307 3.43819 3.49683 3.58682 3.66813 3.72087 3.93375 3.98503 4.14525 4.27911 4.29540 4.36413 4.53642 4.55842 4.67507 4.68326 4.81472 4.99474 5.00206 5.19548 5.43383 5.53892 5.59131 5.77395 6.17071 6.69365 6.80740 7.34852 8.87444 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.003214 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.188551 B = 8708.536507 C = 9374.767422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.062 0.938 9 C 0.031 3.969 10 C -0.105 4.105 11 C -0.603 4.603 12 S 2.604 3.396 13 O -0.960 6.960 14 O -0.968 6.968 15 N -0.933 5.933 16 C 0.083 3.917 17 C -0.120 4.120 18 S -0.068 6.068 19 C 0.073 3.927 20 N -0.465 5.465 21 C 0.089 3.911 22 C -0.127 4.127 23 C -0.136 4.136 24 C 0.119 3.881 25 H 0.265 0.735 26 H 0.005 0.995 27 H 0.005 0.995 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.145 0.855 31 H 0.154 0.846 32 H 0.139 0.861 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.171 0.829 36 H 0.200 0.800 37 H 0.177 0.823 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.134 -20.786 -1.012 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.590 4.590 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.144 4.144 11 C -0.735 4.735 12 S 2.703 3.297 13 O -0.951 6.951 14 O -0.958 6.958 15 N -0.757 5.757 16 C -0.042 4.042 17 C -0.270 4.270 18 S 0.171 5.829 19 C -0.178 4.178 20 N -0.176 5.176 21 C -0.073 4.073 22 C -0.150 4.150 23 C -0.167 4.167 24 C 0.013 3.987 25 H 0.074 0.926 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.164 0.836 31 H 0.172 0.828 32 H 0.156 0.844 33 H 0.133 0.867 34 H 0.114 0.886 35 H 0.188 0.812 36 H 0.217 0.783 37 H 0.194 0.806 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.093 -22.662 -0.759 22.675 hybrid contribution 0.606 3.312 -0.187 3.372 sum 0.699 -19.351 -0.946 19.387 Atomic orbital electron populations 1.70062 1.07616 1.27909 1.51288 1.25899 0.95761 1.03148 0.94573 0.85509 0.78756 0.78645 0.78557 1.19759 1.20693 1.18834 1.21716 0.93778 0.92374 1.51133 0.92016 1.18962 0.93959 0.91623 0.96165 1.21354 0.98717 0.91696 1.02625 1.30557 1.16106 1.12993 1.13799 1.05414 0.75515 0.75165 0.73590 1.93545 1.70279 1.85887 1.45351 1.93587 1.71168 1.85648 1.45380 1.55375 1.65484 1.43883 1.10956 1.22309 1.05756 0.92675 0.83454 1.24326 1.01391 0.98066 1.03210 1.85503 1.57766 1.29368 1.10267 1.22605 1.04026 0.92806 0.98359 1.67730 1.15095 1.36735 0.98060 1.23318 0.96373 0.90101 0.97508 1.22368 0.96582 0.98147 0.97906 1.22018 1.00434 1.00230 0.93999 1.18141 1.00099 0.94163 0.86285 0.92632 0.97696 0.97679 0.91006 0.91067 0.83645 0.82781 0.84358 0.86656 0.88622 0.81172 0.78285 0.80555 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.31 13.29 21.45 0.28 -54.02 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.96 42.94 29.54 68.60 2.03 44.97 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.55 -30.21 9.11 25.60 0.23 -29.98 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.54 4.97 29.85 0.15 1.69 16 10 C -0.10 -3.93 5.16 30.59 0.16 -3.78 16 11 C -0.60 -16.85 5.85 71.98 0.42 -16.43 16 12 S 2.60 71.34 4.73 -56.49 -0.27 71.07 16 13 O -0.96 -29.19 16.17 -127.65 -2.06 -31.26 16 14 O -0.97 -31.62 15.03 -127.65 -1.92 -33.53 16 15 N -0.93 -21.40 3.08 -338.90 -1.04 -22.45 16 16 C 0.08 1.36 6.25 86.67 0.54 1.90 16 17 C -0.12 -1.74 6.67 72.18 0.48 -1.26 16 18 S -0.07 -1.39 22.35 -56.49 -1.26 -2.65 16 19 C 0.07 1.85 7.00 84.81 0.59 2.45 16 20 N -0.46 -11.62 10.29 -191.77 -1.97 -13.59 16 21 C 0.09 1.72 11.18 84.64 0.95 2.66 16 22 C -0.13 -2.48 10.10 22.32 0.23 -2.26 16 23 C -0.14 -3.36 8.06 22.64 0.18 -3.18 16 24 C 0.12 3.01 6.20 38.46 0.24 3.24 16 25 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 28 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 29 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.15 3.67 6.64 -2.39 -0.02 3.65 16 31 H 0.15 3.68 8.14 -2.39 -0.02 3.66 16 32 H 0.14 2.04 6.44 -2.39 -0.02 2.03 16 33 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.17 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.20 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.18 2.27 8.06 -2.91 -0.02 2.24 16 38 H 0.14 3.56 4.24 -2.91 -0.01 3.55 16 Total: -1.00 -74.41 336.42 -0.51 -74.92 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.08 Total: 10.76 kcal Atomic # 6 Polarization: -48.85 SS G_CDS: 4.63 Total: -44.22 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -2.73 Total: -90.06 kcal Atomic # 8 Polarization: -60.81 SS G_CDS: -3.98 Total: -64.79 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 69.95 SS G_CDS: -1.53 Total: 68.42 kcal Total: -74.41 -0.51 -74.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122185853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.327 kcal (2) G-P(sol) polarization free energy of solvation -74.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds