Wall clock time and date at job start Tue Mar 31 2020 14:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31366 * 1 3 3 Si 1.86803 * 119.99847 * 2 1 4 4 H 1.48500 * 109.46775 * 239.99071 * 3 2 1 5 5 H 1.48496 * 109.47231 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47016 * 119.99608 * 3 2 1 7 7 C 1.39037 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00231 * 143.40256 * 7 2 1 9 9 N 1.36891 * 120.00076 * 323.40805 * 7 2 1 10 10 C 1.34773 * 119.99758 * 292.10266 * 9 7 2 11 11 O 1.21596 * 120.00241 * 356.49194 * 10 9 7 12 12 C 1.47667 * 119.99760 * 176.48901 * 10 9 7 13 13 C 1.39630 * 120.54616 * 246.01814 * 12 10 9 14 14 N 1.31652 * 120.59864 * 179.97438 * 13 12 10 15 15 C 1.32064 * 121.88184 * 0.02562 * 14 13 12 16 16 Cl 1.73598 * 119.47685 * 179.97438 * 15 14 13 17 17 C 1.38643 * 121.04577 * 359.97438 * 15 14 13 18 18 Cl 1.73601 * 120.36270 * 179.97438 * 17 15 14 19 19 C 1.38389 * 119.27368 * 359.74662 * 17 15 14 20 20 C 1.46503 * 119.99967 * 112.10370 * 9 7 2 21 21 C 1.54267 * 110.03081 * 309.43973 * 20 9 7 22 22 C 1.54960 * 104.16220 * 95.75638 * 21 20 9 23 23 C 1.54886 * 102.77848 * 37.88739 * 22 21 20 24 24 C 1.53873 * 110.03478 * 66.65550 * 20 9 7 25 25 H 0.97000 * 119.99833 * 5.01817 * 1 2 3 26 26 H 1.07999 * 119.69770 * 0.02562 * 13 12 10 27 27 H 1.08000 * 120.84959 * 180.24760 * 19 17 15 28 28 H 1.08997 * 110.01376 * 188.04641 * 20 9 7 29 29 H 1.09010 * 110.48456 * 214.40523 * 21 20 9 30 30 H 1.09009 * 110.48826 * 337.04110 * 21 20 9 31 31 H 1.08994 * 110.72010 * 279.57132 * 22 21 20 32 32 H 1.09000 * 110.92101 * 156.29669 * 22 21 20 33 33 H 1.09000 * 110.49118 * 203.40688 * 23 22 21 34 34 H 1.08997 * 110.59883 * 80.81341 * 23 22 21 35 35 H 1.09001 * 110.02783 * 359.94858 * 24 20 9 36 36 H 1.08994 * 110.03518 * 121.37840 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.1015 1.6963 -1.2124 5 1 1.2827 2.7465 -0.0006 6 1 3.1013 1.6965 1.2126 7 6 2.0089 -1.2041 0.0005 8 1 2.9292 -1.2965 -0.5570 9 7 1.5269 -2.2725 0.7077 10 6 1.5050 -2.2344 2.0547 11 8 1.9718 -1.2784 2.6436 12 6 0.9141 -3.3536 2.8155 13 6 -0.2456 -3.1649 3.5698 14 7 -0.7736 -4.1621 4.2480 15 6 -0.2369 -5.3687 4.2456 16 17 -0.9851 -6.6383 5.1631 17 6 0.9146 -5.6376 3.5218 18 17 1.6055 -7.2302 3.5317 19 6 1.5046 -4.6237 2.7876 20 6 1.0348 -3.4573 0.0003 21 6 0.0261 -3.0407 -1.0900 22 6 0.8772 -2.9582 -2.3824 23 6 1.8551 -4.1490 -2.2252 24 6 2.1975 -4.1613 -0.7210 25 1 -0.4850 0.8368 -0.0735 26 1 -0.7142 -2.1922 3.5964 27 1 2.3998 -4.8059 2.2115 28 1 0.5623 -4.1425 0.7040 29 1 -0.7548 -3.7940 -1.1951 30 1 -0.4090 -2.0690 -0.8561 31 1 1.4213 -2.0148 -2.4262 32 1 0.2539 -3.0844 -3.2676 33 1 2.7540 -3.9856 -2.8197 34 1 1.3722 -5.0825 -2.5140 35 1 3.1277 -3.6209 -0.5454 36 1 2.2893 -5.1882 -0.3673 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125041183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:34 Heat of formation + Delta-G solvation = -8.238072 kcal Electronic energy + Delta-G solvation = -24004.507473 eV Core-core repulsion = 20347.500076 eV Total energy + Delta-G solvation = -3657.007397 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.51462 -38.76106 -36.96584 -36.71672 -36.59543 -33.54555 -32.82925 -31.69342 -30.80103 -27.90179 -27.11174 -25.52196 -23.90627 -23.50718 -20.44517 -19.93834 -19.46931 -17.71476 -17.19937 -16.92581 -16.11898 -15.36673 -15.02130 -14.87005 -14.64777 -14.21230 -13.91375 -13.60576 -13.43238 -13.08767 -12.55928 -12.34364 -12.21051 -11.82259 -11.66466 -11.64748 -11.22445 -11.10704 -11.03458 -10.69804 -10.61242 -10.50114 -10.40417 -10.21960 -10.06865 -9.92486 -9.76837 -9.59439 -8.92177 -8.67334 -8.57220 -7.29805 -6.43442 -4.21892 0.64268 0.94085 1.60960 1.83905 3.19678 3.30618 3.35896 3.44069 3.70207 4.11683 4.34680 4.47441 4.72741 4.80906 4.87841 5.09738 5.28761 5.36611 5.42309 5.53481 5.72786 5.95032 5.99886 6.19400 6.24750 6.27955 6.30547 6.40889 6.52298 6.58083 6.74736 6.91643 7.17679 7.41572 7.52382 7.59452 8.23260 8.75100 8.83927 9.25877 9.90168 10.54912 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015480 B = 0.004608 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.384455 B = 6075.436113 C = 6983.349942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.095 3.905 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.358 4.358 8 H 0.079 0.921 9 N -0.419 5.419 10 C 0.525 3.475 11 O -0.543 6.543 12 C -0.123 4.123 13 C 0.157 3.843 14 N -0.462 5.462 15 C 0.180 3.820 16 Cl -0.020 7.020 17 C -0.078 4.078 18 Cl -0.040 7.040 19 C -0.033 4.033 20 C 0.120 3.880 21 C -0.129 4.129 22 C -0.111 4.111 23 C -0.118 4.118 24 C -0.130 4.130 25 H 0.271 0.729 26 H 0.178 0.822 27 H 0.157 0.843 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.433 -11.702 1.715 11.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.118 4.118 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.484 4.484 8 H 0.096 0.904 9 N -0.140 5.140 10 C 0.310 3.690 11 O -0.423 6.423 12 C -0.129 4.129 13 C -0.001 4.001 14 N -0.172 5.172 15 C 0.014 3.986 16 Cl 0.008 6.992 17 C -0.108 4.108 18 Cl -0.011 7.011 19 C -0.060 4.060 20 C 0.016 3.984 21 C -0.167 4.167 22 C -0.148 4.148 23 C -0.156 4.156 24 C -0.168 4.168 25 H 0.081 0.919 26 H 0.195 0.805 27 H 0.175 0.825 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.135 0.865 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.150 -11.211 2.611 11.568 hybrid contribution 0.941 0.272 -0.406 1.060 sum -0.209 -10.939 2.205 11.161 Atomic orbital electron populations 1.69895 1.07326 1.28513 1.40312 1.25451 0.94239 1.00151 0.91950 0.86538 0.80445 0.81398 0.79318 1.20059 1.21398 1.19075 1.18450 1.07826 0.88174 1.33944 0.90380 1.43230 1.54559 1.14359 1.01803 1.18113 0.81929 0.85293 0.83702 1.90699 1.48594 1.34349 1.68706 1.21759 0.96741 0.95278 0.99126 1.22970 0.91036 0.97059 0.89002 1.67182 1.31710 0.98361 1.19958 1.21547 0.91097 0.90583 0.95348 1.98404 1.82194 1.46529 1.72030 1.21482 0.96745 0.89465 1.03146 1.98382 1.83614 1.21607 1.97540 1.21700 0.99415 0.89765 0.95138 1.21959 0.93681 0.88399 0.94362 1.22682 0.96247 1.03709 0.94071 1.22396 0.97136 0.98717 0.96590 1.22272 0.99066 0.98367 0.95908 1.22494 0.99966 0.98787 0.95560 0.91869 0.80463 0.82509 0.92623 0.94078 0.86546 0.90029 0.93658 0.92704 0.92977 0.90953 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.95 11.93 55.50 0.66 -20.29 16 2 C 0.10 2.37 4.91 -17.45 -0.09 2.29 16 3 Si 0.90 20.42 29.68 -169.99 -5.05 15.37 16 4 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.36 -8.74 5.78 -15.00 -0.09 -8.83 16 8 H 0.08 1.93 7.88 -52.49 -0.41 1.52 16 9 N -0.42 -9.32 2.27 -107.67 -0.24 -9.57 16 10 C 0.52 11.87 6.97 -12.41 -0.09 11.79 16 11 O -0.54 -14.41 16.80 5.28 0.09 -14.32 16 12 C -0.12 -2.26 4.38 -104.83 -0.46 -2.72 16 13 C 0.16 2.74 10.95 -17.11 -0.19 2.55 16 14 N -0.46 -7.66 10.32 -9.96 -0.10 -7.76 16 15 C 0.18 2.73 7.28 -17.30 -0.13 2.60 16 16 Cl -0.02 -0.26 28.10 -51.86 -1.46 -1.72 16 17 C -0.08 -1.13 6.34 -39.38 -0.25 -1.38 16 18 Cl -0.04 -0.49 27.97 -51.86 -1.45 -1.94 16 19 C -0.03 -0.52 8.01 -38.83 -0.31 -0.83 16 20 C 0.12 2.25 2.93 -66.81 -0.20 2.05 16 21 C -0.13 -2.46 6.03 -25.03 -0.15 -2.61 16 22 C -0.11 -1.93 6.57 -24.70 -0.16 -2.09 16 23 C -0.12 -1.80 6.83 -25.07 -0.17 -1.98 16 24 C -0.13 -2.12 6.34 -25.61 -0.16 -2.28 16 25 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 26 H 0.18 3.02 8.06 -52.49 -0.42 2.60 16 27 H 0.16 2.23 8.06 -52.49 -0.42 1.80 16 28 H 0.06 0.99 5.34 -51.93 -0.28 0.72 16 29 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.12 2.63 5.81 -51.92 -0.30 2.32 16 31 H 0.08 1.61 7.18 -51.93 -0.37 1.24 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.29 7.48 -51.93 -0.39 0.90 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 330.54 15.07 4.98 4.98 Total: -1.00 -26.72 330.54 -8.85 -35.57 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -3.85 Total: 1.11 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.43 Total: -1.44 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.32 Total: -37.61 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.09 Total: -14.32 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.05 Total: 15.37 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -2.91 Total: -3.66 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.72 -8.85 -35.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125041183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.334 kcal (2) G-P(sol) polarization free energy of solvation -26.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds