Wall clock time and date at job start Tue Mar 31 2020 14:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31366 * 1 3 3 Si 1.86803 * 119.99847 * 2 1 4 4 H 1.48500 * 109.46775 * 239.99071 * 3 2 1 5 5 H 1.48496 * 109.47231 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47016 * 119.99608 * 3 2 1 7 7 C 1.39037 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00231 * 143.40256 * 7 2 1 9 9 N 1.36891 * 120.00076 * 323.40805 * 7 2 1 10 10 C 1.34773 * 119.99758 * 292.10266 * 9 7 2 11 11 O 1.21596 * 120.00241 * 356.49194 * 10 9 7 12 12 C 1.47667 * 119.99760 * 176.48901 * 10 9 7 13 13 C 1.39630 * 120.54616 * 246.01814 * 12 10 9 14 14 N 1.31652 * 120.59864 * 179.97438 * 13 12 10 15 15 C 1.32064 * 121.88184 * 0.02562 * 14 13 12 16 16 Cl 1.73598 * 119.47685 * 179.97438 * 15 14 13 17 17 C 1.38643 * 121.04577 * 359.97438 * 15 14 13 18 18 Cl 1.73601 * 120.36270 * 179.97438 * 17 15 14 19 19 C 1.38389 * 119.27368 * 359.74662 * 17 15 14 20 20 C 1.46503 * 119.99967 * 112.10370 * 9 7 2 21 21 C 1.54267 * 110.03081 * 309.43973 * 20 9 7 22 22 C 1.54960 * 104.16220 * 95.75638 * 21 20 9 23 23 C 1.54886 * 102.77848 * 37.88739 * 22 21 20 24 24 C 1.53873 * 110.03478 * 66.65550 * 20 9 7 25 25 H 0.97000 * 119.99833 * 5.01817 * 1 2 3 26 26 H 1.07999 * 119.69770 * 0.02562 * 13 12 10 27 27 H 1.08000 * 120.84959 * 180.24760 * 19 17 15 28 28 H 1.08997 * 110.01376 * 188.04641 * 20 9 7 29 29 H 1.09010 * 110.48456 * 214.40523 * 21 20 9 30 30 H 1.09009 * 110.48826 * 337.04110 * 21 20 9 31 31 H 1.08994 * 110.72010 * 279.57132 * 22 21 20 32 32 H 1.09000 * 110.92101 * 156.29669 * 22 21 20 33 33 H 1.09000 * 110.49118 * 203.40688 * 23 22 21 34 34 H 1.08997 * 110.59883 * 80.81341 * 23 22 21 35 35 H 1.09001 * 110.02783 * 359.94858 * 24 20 9 36 36 H 1.08994 * 110.03518 * 121.37840 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.1015 1.6963 -1.2124 5 1 1.2827 2.7465 -0.0006 6 1 3.1013 1.6965 1.2126 7 6 2.0089 -1.2041 0.0005 8 1 2.9292 -1.2965 -0.5570 9 7 1.5269 -2.2725 0.7077 10 6 1.5050 -2.2344 2.0547 11 8 1.9718 -1.2784 2.6436 12 6 0.9141 -3.3536 2.8155 13 6 -0.2456 -3.1649 3.5698 14 7 -0.7736 -4.1621 4.2480 15 6 -0.2369 -5.3687 4.2456 16 17 -0.9851 -6.6383 5.1631 17 6 0.9146 -5.6376 3.5218 18 17 1.6055 -7.2302 3.5317 19 6 1.5046 -4.6237 2.7876 20 6 1.0348 -3.4573 0.0003 21 6 0.0261 -3.0407 -1.0900 22 6 0.8772 -2.9582 -2.3824 23 6 1.8551 -4.1490 -2.2252 24 6 2.1975 -4.1613 -0.7210 25 1 -0.4850 0.8368 -0.0735 26 1 -0.7142 -2.1922 3.5964 27 1 2.3998 -4.8059 2.2115 28 1 0.5623 -4.1425 0.7040 29 1 -0.7548 -3.7940 -1.1951 30 1 -0.4090 -2.0690 -0.8561 31 1 1.4213 -2.0148 -2.4262 32 1 0.2539 -3.0844 -3.2676 33 1 2.7540 -3.9856 -2.8197 34 1 1.3722 -5.0825 -2.5140 35 1 3.1277 -3.6209 -0.5454 36 1 2.2893 -5.1882 -0.3673 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125041183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:33 Heat of formation + Delta-G solvation = -21.457277 kcal Electronic energy + Delta-G solvation = -24005.080700 eV Core-core repulsion = 20347.500076 eV Total energy + Delta-G solvation = -3657.580624 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.89573 -40.30914 -38.43619 -37.87858 -37.81435 -35.29373 -34.28120 -33.31613 -32.17022 -29.28349 -28.64238 -27.16706 -25.22801 -24.99209 -22.04838 -21.26269 -21.05973 -19.17065 -18.56146 -18.30909 -17.74377 -16.92345 -16.65599 -16.32183 -15.95646 -15.69513 -15.46583 -15.19695 -14.80260 -14.54023 -13.99636 -13.93942 -13.48580 -13.29854 -13.19545 -12.87820 -12.76142 -12.71401 -12.34130 -12.26197 -12.12896 -12.03040 -11.77613 -11.64762 -11.48575 -11.26838 -11.14670 -10.92602 -10.55743 -10.46112 -10.05093 -9.10418 -8.31702 -6.13061 -0.65440 -0.32792 0.43409 0.67837 1.34417 1.44871 1.55476 1.86376 2.12706 2.36652 2.78986 3.01334 3.12693 3.41319 3.51603 3.70387 3.93080 3.98524 4.05942 4.22326 4.35442 4.61138 4.68661 4.80298 4.90671 4.92335 4.98122 5.03728 5.22444 5.26249 5.35955 5.53736 5.55970 5.77393 5.92551 6.23279 6.37748 6.94219 7.02597 7.44857 8.08982 8.64359 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015480 B = 0.004608 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.384455 B = 6075.436113 C = 6983.349942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.062 3.938 3 Si 0.935 3.065 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.291 1.291 7 C -0.361 4.361 8 H 0.070 0.930 9 N -0.424 5.424 10 C 0.518 3.482 11 O -0.596 6.596 12 C -0.140 4.140 13 C 0.154 3.846 14 N -0.469 5.469 15 C 0.179 3.821 16 Cl 0.004 6.996 17 C -0.071 4.071 18 Cl -0.011 7.011 19 C -0.021 4.021 20 C 0.117 3.883 21 C -0.132 4.132 22 C -0.109 4.109 23 C -0.109 4.109 24 C -0.125 4.125 25 H 0.270 0.730 26 H 0.171 0.829 27 H 0.173 0.827 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.340 -14.658 1.316 14.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.149 4.149 3 Si 0.761 3.239 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.217 1.217 7 C -0.487 4.487 8 H 0.087 0.913 9 N -0.144 5.144 10 C 0.305 3.695 11 O -0.480 6.480 12 C -0.146 4.146 13 C -0.004 4.004 14 N -0.179 5.179 15 C 0.014 3.986 16 Cl 0.032 6.968 17 C -0.101 4.101 18 Cl 0.018 6.982 19 C -0.048 4.048 20 C 0.014 3.986 21 C -0.170 4.170 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.164 4.164 25 H 0.080 0.920 26 H 0.188 0.812 27 H 0.190 0.810 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.066 -14.191 2.172 14.395 hybrid contribution 0.898 1.023 -0.217 1.379 sum -0.167 -13.168 1.955 13.313 Atomic orbital electron populations 1.69957 1.07817 1.28624 1.41558 1.25902 0.94759 1.01873 0.92353 0.85926 0.79607 0.79737 0.78605 1.18372 1.20855 1.21735 1.18429 1.07501 0.89249 1.33557 0.91269 1.43393 1.54053 1.14901 1.02004 1.18601 0.81227 0.85743 0.83905 1.90650 1.50853 1.36762 1.69770 1.21287 0.97859 0.95167 1.00246 1.22827 0.91010 0.97303 0.89232 1.67223 1.31923 0.98776 1.20004 1.21854 0.91215 0.90584 0.94990 1.98416 1.81827 1.45151 1.71356 1.21422 0.96210 0.90456 1.02049 1.98399 1.83116 1.19329 1.97356 1.21759 0.99380 0.88726 0.94911 1.22124 0.94797 0.87227 0.94420 1.22639 0.96972 1.02338 0.95075 1.22315 0.97440 0.98424 0.96492 1.22246 0.99021 0.98342 0.95083 1.22466 0.97787 0.99839 0.96292 0.91989 0.81181 0.80999 0.91430 0.92057 0.90238 0.93177 0.91929 0.91721 0.90263 0.92786 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.24 11.93 21.68 0.26 -43.98 16 2 C 0.06 3.17 4.91 84.95 0.42 3.59 16 3 Si 0.94 43.01 29.68 68.60 2.04 45.04 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 7 C -0.36 -18.10 5.78 84.10 0.49 -17.61 16 8 H 0.07 3.53 7.88 -2.91 -0.02 3.50 16 9 N -0.42 -19.15 2.27 -612.81 -1.39 -20.54 16 10 C 0.52 24.02 6.97 86.73 0.60 24.63 16 11 O -0.60 -32.95 16.80 -4.02 -0.07 -33.02 16 12 C -0.14 -5.11 4.38 -20.00 -0.09 -5.20 16 13 C 0.15 5.39 10.95 85.06 0.93 6.32 16 14 N -0.47 -15.05 10.32 -185.43 -1.91 -16.96 16 15 C 0.18 5.05 7.28 84.75 0.62 5.67 16 16 Cl 0.00 0.09 28.10 -2.72 -0.08 0.01 16 17 C -0.07 -1.86 6.34 22.40 0.14 -1.72 16 18 Cl -0.01 -0.23 27.97 -2.72 -0.08 -0.31 16 19 C -0.02 -0.62 8.01 22.76 0.18 -0.43 16 20 C 0.12 4.28 2.93 45.71 0.13 4.41 16 21 C -0.13 -4.94 6.03 31.69 0.19 -4.75 16 22 C -0.11 -3.66 6.57 31.91 0.21 -3.45 16 23 C -0.11 -3.00 6.83 31.67 0.22 -2.78 16 24 C -0.13 -3.80 6.34 31.32 0.20 -3.60 16 25 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 26 H 0.17 6.07 8.06 -2.91 -0.02 6.05 16 27 H 0.17 4.44 8.06 -2.91 -0.02 4.42 16 28 H 0.07 2.29 5.34 -2.39 -0.01 2.28 16 29 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.08 3.64 5.81 -2.38 -0.01 3.63 16 31 H 0.05 1.99 7.18 -2.39 -0.02 1.97 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 1.85 7.48 -2.39 -0.02 1.83 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -59.29 330.54 4.13 -55.16 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.12 Total: 9.52 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 4.24 Total: 5.08 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -3.05 Total: -81.48 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.07 Total: -33.02 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.04 Total: 45.04 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.15 Total: -0.30 kcal Total: -59.29 4.13 -55.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125041183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.698 kcal (2) G-P(sol) polarization free energy of solvation -59.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds