Wall clock time and date at job start Tue Mar 31 2020 14:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00007 * 2 1 4 4 H 1.48497 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47011 * 300.00276 * 3 2 1 6 6 H 1.48502 * 109.46859 * 59.99802 * 3 2 1 7 7 C 1.37871 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00308 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47677 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00058 * 75.41604 * 10 9 7 12 12 C 1.52999 * 109.47313 * 94.87992 * 11 10 9 13 13 C 1.53005 * 117.51823 * 113.38703 * 12 11 10 14 14 C 1.52995 * 117.50483 * 182.01856 * 12 11 10 15 15 C 1.34775 * 119.99888 * 255.42159 * 10 9 7 16 16 O 1.21526 * 119.99938 * 173.44113 * 15 10 9 17 17 C 1.48075 * 120.00061 * 353.44066 * 15 10 9 18 18 C 1.39815 * 120.92702 * 33.87331 * 17 15 10 19 19 C 1.38261 * 119.00623 * 179.73105 * 18 17 15 20 20 Cl 1.73597 * 119.54697 * 180.29476 * 19 18 17 21 21 N 1.31923 * 120.90553 * 0.55380 * 19 18 17 22 22 C 1.31785 * 122.05267 * 359.72047 * 21 19 18 23 23 C 1.38308 * 120.89376 * 359.97438 * 22 21 19 24 24 Cl 1.73603 * 120.50771 * 179.97438 * 23 22 21 25 25 H 0.96993 * 119.99926 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47349 * 60.00148 * 9 7 2 27 27 H 1.09004 * 109.46900 * 300.00527 * 9 7 2 28 28 H 1.09004 * 109.47152 * 334.88655 * 11 10 9 29 29 H 1.08997 * 109.47345 * 214.88387 * 11 10 9 30 30 H 1.09000 * 115.54719 * 327.69265 * 12 11 10 31 31 H 1.09000 * 117.49878 * 214.97176 * 13 12 11 32 32 H 1.08994 * 117.49764 * 359.97438 * 13 12 11 33 33 H 1.09006 * 117.49367 * 359.97438 * 14 12 11 34 34 H 1.08997 * 117.50215 * 144.99368 * 14 12 11 35 35 H 1.08004 * 120.49634 * 359.97438 * 18 17 15 36 36 H 1.08003 * 119.55657 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.9219 -3.9619 1.2273 12 6 2.1722 -5.0781 1.9573 13 6 2.8570 -6.4428 2.0554 14 6 2.7415 -5.5539 3.2953 15 6 2.4177 -4.3158 -1.1302 16 8 3.2912 -5.1599 -1.1638 17 6 1.5890 -4.0597 -2.3303 18 6 1.1203 -2.7745 -2.6190 19 6 0.3542 -2.5793 -3.7534 20 17 -0.2286 -0.9880 -4.1294 21 7 0.0559 -3.5868 -4.5511 22 6 0.4723 -4.8143 -4.3132 23 6 1.2486 -5.0985 -3.2044 24 17 1.7911 -6.7193 -2.9003 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5568 -0.8903 27 1 0.6248 -2.5570 0.8897 28 1 2.9864 -3.0855 1.8723 29 1 3.9262 -4.3027 0.9759 30 1 1.0878 -5.0658 1.8476 31 1 2.2230 -7.3284 2.0103 32 1 3.8416 -6.5458 1.5994 33 1 3.6505 -5.0719 3.6553 34 1 2.0318 -5.8546 4.0659 35 1 1.3564 -1.9458 -1.9679 36 1 0.2037 -5.6092 -4.9933 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152900809.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:11 Heat of formation + Delta-G solvation = 35.556622 kcal Electronic energy + Delta-G solvation = -23694.487154 eV Core-core repulsion = 20039.378838 eV Total energy + Delta-G solvation = -3655.108316 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.58011 -38.89627 -36.98944 -36.55399 -36.17550 -35.16346 -32.69827 -32.52759 -30.69821 -28.00191 -26.88758 -24.31912 -23.37090 -22.93777 -22.10390 -20.71845 -19.37640 -17.38813 -16.91464 -16.66637 -16.29314 -15.83867 -15.37429 -14.82909 -14.65427 -14.46267 -14.25126 -14.02439 -13.44976 -12.99406 -12.66518 -12.51256 -12.25834 -11.92560 -11.43764 -11.30538 -11.23000 -11.18419 -11.06403 -11.03419 -10.82309 -10.74502 -10.44148 -10.19013 -9.92222 -9.90652 -9.66995 -9.47364 -9.07747 -8.77721 -8.49311 -7.92098 -6.36433 -4.46899 0.73327 1.00499 1.91619 2.27741 3.12851 3.13448 3.23455 3.26255 3.48194 3.79303 4.09414 4.19468 4.49318 4.75545 4.89452 4.95092 5.00434 5.04575 5.20093 5.27726 5.63575 5.71474 5.75669 5.82104 5.95448 6.06566 6.11091 6.18773 6.33617 6.46441 6.53523 6.61897 6.98302 7.28490 7.57016 7.65873 7.79497 8.09713 8.55891 8.73121 9.22423 10.68445 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.008515 B = 0.007177 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3287.628184 B = 3900.497282 C = 6720.274405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.893 3.107 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.551 4.551 8 H 0.067 0.933 9 C 0.207 3.793 10 N -0.579 5.579 11 C 0.154 3.846 12 C -0.162 4.162 13 C -0.173 4.173 14 C -0.179 4.179 15 C 0.555 3.445 16 O -0.535 6.535 17 C -0.068 4.068 18 C -0.106 4.106 19 C 0.162 3.838 20 Cl -0.014 7.014 21 N -0.457 5.457 22 C 0.109 3.891 23 C -0.049 4.049 24 Cl -0.030 7.030 25 H 0.269 0.731 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.214 0.786 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 -7.801 -2.334 8.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.133 4.133 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.589 4.589 8 H 0.085 0.915 9 C 0.088 3.912 10 N -0.308 5.308 11 C 0.031 3.969 12 C -0.181 4.181 13 C -0.210 4.210 14 C -0.216 4.216 15 C 0.342 3.658 16 O -0.413 6.413 17 C -0.080 4.080 18 C -0.127 4.127 19 C -0.002 4.002 20 Cl 0.015 6.985 21 N -0.168 5.168 22 C -0.049 4.049 23 C -0.079 4.079 24 Cl -0.001 7.001 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.230 0.770 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.349 -7.926 -3.048 8.499 hybrid contribution 0.599 0.887 0.732 1.296 sum 0.948 -7.039 -2.316 7.471 Atomic orbital electron populations 1.69920 1.05894 1.27767 1.47468 1.24948 0.94891 0.99340 0.94094 0.86496 0.80326 0.83100 0.78090 1.19436 1.20436 1.20628 1.21442 0.93999 0.89952 1.53504 0.91467 1.20298 0.88238 0.82795 0.99898 1.48030 1.42657 1.31974 1.08178 1.20884 0.94500 0.96524 0.85038 1.22751 0.99865 0.96174 0.99350 1.22949 1.02443 0.94121 1.01458 1.22894 1.03037 1.04490 0.91202 1.17805 0.83559 0.81810 0.82675 1.90742 1.32566 1.34418 1.83609 1.20351 0.98592 0.92491 0.96541 1.23667 0.93603 0.99821 0.95573 1.21695 0.97292 0.88830 0.92340 1.98421 1.87283 1.18428 1.94369 1.66955 1.20717 0.99051 1.30122 1.22483 0.94588 0.93207 0.94649 1.22170 1.00251 0.88199 0.97280 1.98392 1.88408 1.17854 1.95402 0.92102 0.92285 0.94509 0.89114 0.90706 0.87960 0.89564 0.88633 0.88868 0.89157 0.76988 0.80960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.78 13.29 55.43 0.74 -21.05 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.89 19.13 29.54 -169.99 -5.02 14.11 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.55 -12.96 7.61 -34.44 -0.26 -13.22 16 8 H 0.07 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.21 4.51 4.68 -5.19 -0.02 4.49 16 10 N -0.58 -11.48 2.51 -176.09 -0.44 -11.92 16 11 C 0.15 2.69 5.63 -4.04 -0.02 2.67 16 12 C -0.16 -2.52 5.98 -90.62 -0.54 -3.06 16 13 C -0.17 -2.41 10.18 -26.73 -0.27 -2.68 16 14 C -0.18 -2.28 10.25 -26.73 -0.27 -2.55 16 15 C 0.56 11.14 7.20 -12.23 -0.09 11.05 16 16 O -0.53 -11.20 14.78 5.34 0.08 -11.12 16 17 C -0.07 -1.28 5.54 -104.63 -0.58 -1.86 16 18 C -0.11 -2.06 7.30 -38.98 -0.28 -2.34 16 19 C 0.16 2.94 7.27 -17.50 -0.13 2.82 16 20 Cl -0.01 -0.24 29.10 -51.86 -1.51 -1.75 16 21 N -0.46 -7.67 10.31 -10.38 -0.11 -7.77 16 22 C 0.11 1.62 10.98 -17.55 -0.19 1.43 16 23 C -0.05 -0.81 6.36 -38.91 -0.25 -1.05 16 24 Cl -0.03 -0.46 26.84 -51.86 -1.39 -1.85 16 25 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 26 H 0.06 1.33 3.76 -51.99 -0.20 1.14 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.59 7.91 -51.93 -0.41 1.18 16 29 H 0.07 1.32 7.23 -51.93 -0.38 0.94 16 30 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.10 1.38 8.04 -51.93 -0.42 0.96 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.21 4.57 4.06 -52.48 -0.21 4.36 16 36 H 0.17 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 337.99 15.07 5.09 5.09 Total: -1.00 -25.18 337.99 -9.27 -34.45 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -3.69 Total: 4.47 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -3.01 Total: -2.67 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.19 Total: -40.75 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -2.90 Total: -3.60 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -25.18 -9.27 -34.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152900809.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.003 kcal (2) G-P(sol) polarization free energy of solvation -25.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds