Wall clock time and date at job start Tue Mar 31 2020 14:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00007 * 2 1 4 4 H 1.48497 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47011 * 300.00276 * 3 2 1 6 6 H 1.48502 * 109.46859 * 59.99802 * 3 2 1 7 7 C 1.37871 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00308 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47677 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00058 * 75.41604 * 10 9 7 12 12 C 1.52999 * 109.47313 * 94.87992 * 11 10 9 13 13 C 1.53005 * 117.51823 * 113.38703 * 12 11 10 14 14 C 1.52995 * 117.50483 * 182.01856 * 12 11 10 15 15 C 1.34775 * 119.99888 * 255.42159 * 10 9 7 16 16 O 1.21526 * 119.99938 * 173.44113 * 15 10 9 17 17 C 1.48075 * 120.00061 * 353.44066 * 15 10 9 18 18 C 1.39815 * 120.92702 * 33.87331 * 17 15 10 19 19 C 1.38261 * 119.00623 * 179.73105 * 18 17 15 20 20 Cl 1.73597 * 119.54697 * 180.29476 * 19 18 17 21 21 N 1.31923 * 120.90553 * 0.55380 * 19 18 17 22 22 C 1.31785 * 122.05267 * 359.72047 * 21 19 18 23 23 C 1.38308 * 120.89376 * 359.97438 * 22 21 19 24 24 Cl 1.73603 * 120.50771 * 179.97438 * 23 22 21 25 25 H 0.96993 * 119.99926 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47349 * 60.00148 * 9 7 2 27 27 H 1.09004 * 109.46900 * 300.00527 * 9 7 2 28 28 H 1.09004 * 109.47152 * 334.88655 * 11 10 9 29 29 H 1.08997 * 109.47345 * 214.88387 * 11 10 9 30 30 H 1.09000 * 115.54719 * 327.69265 * 12 11 10 31 31 H 1.09000 * 117.49878 * 214.97176 * 13 12 11 32 32 H 1.08994 * 117.49764 * 359.97438 * 13 12 11 33 33 H 1.09006 * 117.49367 * 359.97438 * 14 12 11 34 34 H 1.08997 * 117.50215 * 144.99368 * 14 12 11 35 35 H 1.08004 * 120.49634 * 359.97438 * 18 17 15 36 36 H 1.08003 * 119.55657 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.9219 -3.9619 1.2273 12 6 2.1722 -5.0781 1.9573 13 6 2.8570 -6.4428 2.0554 14 6 2.7415 -5.5539 3.2953 15 6 2.4177 -4.3158 -1.1302 16 8 3.2912 -5.1599 -1.1638 17 6 1.5890 -4.0597 -2.3303 18 6 1.1203 -2.7745 -2.6190 19 6 0.3542 -2.5793 -3.7534 20 17 -0.2286 -0.9880 -4.1294 21 7 0.0559 -3.5868 -4.5511 22 6 0.4723 -4.8143 -4.3132 23 6 1.2486 -5.0985 -3.2044 24 17 1.7911 -6.7193 -2.9003 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5568 -0.8903 27 1 0.6248 -2.5570 0.8897 28 1 2.9864 -3.0855 1.8723 29 1 3.9262 -4.3027 0.9759 30 1 1.0878 -5.0658 1.8476 31 1 2.2230 -7.3284 2.0103 32 1 3.8416 -6.5458 1.5994 33 1 3.6505 -5.0719 3.6553 34 1 2.0318 -5.8546 4.0659 35 1 1.3564 -1.9458 -1.9679 36 1 0.2037 -5.6092 -4.9933 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152900809.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:11 Heat of formation + Delta-G solvation = 24.335794 kcal Electronic energy + Delta-G solvation = -23694.973726 eV Core-core repulsion = 20039.378838 eV Total energy + Delta-G solvation = -3655.594888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.01834 -40.35797 -38.27229 -37.86882 -37.52937 -36.76239 -34.48209 -33.94174 -32.05984 -29.67609 -28.39229 -25.82956 -24.75931 -24.61117 -23.17734 -22.03321 -20.81406 -18.86440 -18.62716 -18.21036 -17.72181 -17.24325 -16.87574 -16.35709 -16.16099 -15.89585 -15.56260 -15.42789 -14.79276 -14.55957 -14.30405 -14.00733 -13.61060 -13.39610 -12.97812 -12.86045 -12.62069 -12.55732 -12.41900 -12.35869 -12.32887 -12.18157 -12.12520 -11.73863 -11.44246 -11.28237 -11.02813 -10.81984 -10.67867 -10.43170 -9.91052 -9.53913 -8.21728 -6.37016 -0.68078 -0.36332 0.55567 0.93677 1.41108 1.46852 1.54354 1.64070 2.01020 2.33583 2.43448 2.92897 3.07715 3.18111 3.38601 3.51995 3.57724 3.85386 4.01869 4.13020 4.25312 4.33668 4.41967 4.62413 4.68294 4.78217 4.83677 4.86923 5.02747 5.09028 5.18400 5.27664 5.28811 5.62238 5.72322 5.97664 6.31481 6.45028 6.74285 7.09569 7.35310 8.82608 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.008515 B = 0.007177 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3287.628184 B = 3900.497282 C = 6720.274405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.553 4.553 8 H 0.057 0.943 9 C 0.221 3.779 10 N -0.582 5.582 11 C 0.153 3.847 12 C -0.184 4.184 13 C -0.169 4.169 14 C -0.154 4.154 15 C 0.552 3.448 16 O -0.547 6.547 17 C -0.083 4.083 18 C -0.120 4.120 19 C 0.157 3.843 20 Cl -0.013 7.013 21 N -0.457 5.457 22 C 0.130 3.870 23 C -0.049 4.049 24 Cl -0.016 7.016 25 H 0.270 0.730 26 H 0.058 0.942 27 H 0.017 0.983 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.191 0.809 36 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.680 -8.914 -2.709 9.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.591 4.591 8 H 0.075 0.925 9 C 0.101 3.899 10 N -0.311 5.311 11 C 0.031 3.969 12 C -0.203 4.203 13 C -0.206 4.206 14 C -0.192 4.192 15 C 0.339 3.661 16 O -0.427 6.427 17 C -0.094 4.094 18 C -0.141 4.141 19 C -0.005 4.005 20 Cl 0.015 6.985 21 N -0.169 5.169 22 C -0.029 4.029 23 C -0.080 4.080 24 Cl 0.014 6.986 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.207 0.793 36 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.465 -9.036 -3.411 9.669 hybrid contribution 0.583 1.131 0.816 1.511 sum 1.047 -7.905 -2.595 8.386 Atomic orbital electron populations 1.69987 1.06780 1.28301 1.48364 1.25461 0.95424 1.01529 0.93900 0.85743 0.79218 0.80298 0.77994 1.19530 1.20256 1.20421 1.21509 0.93507 0.90875 1.53217 0.92470 1.19991 0.88184 0.82918 0.98759 1.48049 1.42392 1.31514 1.09112 1.20949 0.94501 0.97103 0.84333 1.22590 0.99020 0.96679 1.02060 1.22964 1.01947 0.93572 1.02079 1.23010 1.03324 1.02444 0.90385 1.18006 0.83540 0.81551 0.82974 1.90718 1.33105 1.34950 1.83906 1.20362 0.99134 0.93180 0.96761 1.23328 0.95133 0.99440 0.96201 1.21675 0.97228 0.89357 0.92266 1.98415 1.87200 1.18557 1.94289 1.67081 1.20765 0.99397 1.29655 1.23200 0.92303 0.93350 0.94071 1.22320 1.00139 0.88327 0.97173 1.98399 1.88272 1.16589 1.95387 0.92045 0.92478 0.96532 0.89755 0.90952 0.89197 0.88562 0.89220 0.87743 0.87319 0.79286 0.76547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.30 13.29 21.45 0.28 -45.02 16 2 C 0.04 1.96 5.46 84.65 0.46 2.42 16 3 Si 0.94 39.38 29.54 68.60 2.03 41.40 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 6 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.55 -26.60 7.61 25.60 0.19 -26.41 16 8 H 0.06 2.82 7.81 -2.91 -0.02 2.79 16 9 C 0.22 9.97 4.68 85.63 0.40 10.37 16 10 N -0.58 -23.56 2.51 -829.32 -2.08 -25.64 16 11 C 0.15 5.46 5.63 86.38 0.49 5.94 16 12 C -0.18 -5.66 5.98 -10.79 -0.06 -5.73 16 13 C -0.17 -4.48 10.18 30.60 0.31 -4.16 16 14 C -0.15 -3.64 10.25 30.59 0.31 -3.33 16 15 C 0.55 22.28 7.20 86.85 0.62 22.91 16 16 O -0.55 -22.78 14.78 -3.80 -0.06 -22.84 16 17 C -0.08 -3.10 5.54 -19.87 -0.11 -3.21 16 18 C -0.12 -4.70 7.30 22.66 0.17 -4.53 16 19 C 0.16 5.64 7.27 84.68 0.62 6.25 16 20 Cl -0.01 -0.46 29.10 -2.72 -0.08 -0.54 16 21 N -0.46 -14.49 10.31 -186.77 -1.93 -16.42 16 22 C 0.13 3.49 10.98 84.72 0.93 4.42 16 23 C -0.05 -1.55 6.36 22.70 0.14 -1.40 16 24 Cl -0.02 -0.45 26.84 -2.72 -0.07 -0.52 16 25 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 26 H 0.06 2.66 3.76 -2.45 -0.01 2.65 16 27 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 3.03 7.91 -2.39 -0.02 3.01 16 29 H 0.07 2.57 7.23 -2.39 -0.02 2.56 16 30 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.09 2.49 8.04 -2.39 -0.02 2.48 16 33 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 34 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.19 8.38 4.06 -2.91 -0.01 8.37 16 36 H 0.22 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -53.42 337.99 3.70 -49.71 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 1.13 Total: 16.32 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 4.47 Total: 3.54 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -3.72 Total: -87.08 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.06 Total: -22.84 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.40 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.15 Total: -1.06 kcal Total: -53.42 3.70 -49.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152900809.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.048 kcal (2) G-P(sol) polarization free energy of solvation -53.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds