Wall clock time and date at job start Tue Mar 31 2020 15:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86799 * 120.00131 * 2 1 4 4 H 1.48499 * 109.47600 * 270.00393 * 3 2 1 5 5 H 1.48508 * 109.47081 * 30.00038 * 3 2 1 6 6 H 1.48498 * 109.47459 * 150.00277 * 3 2 1 7 7 C 1.40047 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00451 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00002 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99963 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00243 * 179.97438 * 9 7 2 12 12 C 1.46501 * 119.99949 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.46992 * 180.02562 * 12 11 9 14 14 C 1.34912 * 125.63527 * 90.02058 * 13 12 11 15 15 C 1.40666 * 107.08443 * 179.71151 * 14 13 12 16 16 C 1.36318 * 106.71898 * 0.40861 * 15 14 13 17 17 C 1.47023 * 125.96465 * 179.85275 * 16 15 14 18 18 N 1.29354 * 124.84506 * 179.71103 * 17 16 15 19 19 C 1.34370 * 117.87953 * 180.02562 * 18 17 16 20 20 C 1.41285 * 128.75531 * 180.02562 * 19 18 17 21 21 C 1.36115 * 120.53741 * 180.25951 * 20 19 18 22 22 C 1.38776 * 120.78403 * 359.50559 * 21 20 19 23 23 C 1.37697 * 120.01041 * 0.47182 * 22 21 20 24 24 C 1.39356 * 120.05437 * 359.78936 * 23 22 21 25 25 S 1.75806 * 124.84754 * 359.76023 * 17 16 15 26 26 O 1.34176 * 125.63837 * 269.98103 * 13 12 11 27 27 H 0.97005 * 120.00036 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99720 * 0.02562 * 11 9 7 29 29 H 1.09001 * 109.46851 * 60.00861 * 12 11 9 30 30 H 1.08997 * 109.47223 * 300.00156 * 12 11 9 31 31 H 1.08000 * 126.45533 * 359.97438 * 14 13 12 32 32 H 1.07997 * 126.64512 * 180.29386 * 15 14 13 33 33 H 1.08002 * 119.72808 * 359.97438 * 20 19 18 34 34 H 1.07995 * 119.60749 * 179.74487 * 21 20 19 35 35 H 1.08001 * 119.99438 * 180.23850 * 22 21 20 36 36 H 1.07999 * 119.97393 * 179.77327 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0465 -1.4000 5 1 1.4382 2.6527 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0016 12 6 1.2164 -4.9164 -0.0010 13 6 2.1957 -6.0618 -0.0018 14 6 2.7070 -6.6595 1.0943 15 6 3.5682 -7.6775 0.6461 16 6 3.5434 -7.6405 -0.7163 17 6 4.2973 -8.5239 -1.6179 18 7 4.2533 -8.4730 -2.9097 19 6 5.0017 -9.3508 -3.5989 20 6 5.1277 -9.4984 -4.9984 21 6 5.9387 -10.4578 -5.5224 22 6 6.6654 -11.3029 -4.6955 23 6 6.5635 -11.1829 -3.3275 24 6 5.7343 -10.2103 -2.7720 25 16 5.3861 -9.8010 -1.0943 26 8 2.7026 -6.6563 -1.0926 27 1 -0.4850 0.8401 -0.0004 28 1 2.9190 -3.6477 -0.0020 29 1 0.5888 -4.9739 -0.8904 30 1 0.5908 -4.9743 0.8896 31 1 2.4920 -6.4071 2.1222 32 1 4.1400 -8.3557 1.2621 33 1 4.5724 -8.8477 -5.6577 34 1 6.0206 -10.5601 -6.5943 35 1 7.3080 -12.0572 -5.1249 36 1 7.1265 -11.8432 -2.6846 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153579498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:27 Heat of formation + Delta-G solvation = 37.194288 kcal Electronic energy + Delta-G solvation = -22922.476350 eV Core-core repulsion = 19271.915604 eV Total energy + Delta-G solvation = -3650.560746 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.64044 -40.52115 -37.39090 -37.14053 -33.83776 -33.15065 -32.39467 -31.51705 -31.18265 -29.29991 -27.11896 -25.60785 -24.21241 -23.19795 -21.92071 -21.66167 -20.21092 -19.78031 -18.80065 -17.77004 -17.17497 -16.53452 -16.28463 -15.71622 -15.46652 -15.16706 -14.91316 -14.56386 -14.25048 -14.14425 -13.98459 -13.46077 -13.10806 -12.95310 -12.74898 -12.45282 -12.37899 -12.32823 -11.96407 -11.40853 -11.26301 -11.18966 -10.93065 -10.52227 -10.50236 -10.25490 -10.09211 -10.05557 -9.46812 -8.88105 -8.52683 -8.19567 -7.65885 -7.64201 -6.22236 -4.67961 -0.23833 0.63925 0.75319 1.24242 1.35337 2.17479 2.63943 2.82271 3.13869 3.20742 3.24206 3.34577 3.49098 4.09658 4.20928 4.46241 4.54153 4.57720 4.77156 4.81796 4.83254 4.91430 4.99218 5.14657 5.47169 5.60298 5.61009 5.67616 5.75047 5.77885 5.84777 5.97378 6.07642 6.16362 6.28670 6.40671 7.02881 7.30638 7.40936 7.81602 7.95553 8.27466 8.99014 9.42533 10.53894 10.71851 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020027 B = 0.002229 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.783937 B =12558.336778 C =13229.363630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.556 3.444 10 O -0.579 6.579 11 N -0.764 5.764 12 C 0.205 3.795 13 C 0.029 3.971 14 C -0.202 4.202 15 C -0.148 4.148 16 C 0.020 3.980 17 C 0.192 3.808 18 N -0.454 5.454 19 C 0.088 3.912 20 C -0.061 4.061 21 C -0.107 4.107 22 C -0.101 4.101 23 C -0.072 4.072 24 C -0.180 4.180 25 S 0.106 5.894 26 O -0.141 6.141 27 H 0.269 0.731 28 H 0.384 0.616 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.472 -23.655 -4.466 28.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.360 3.640 10 O -0.461 6.461 11 N -0.421 5.421 12 C 0.081 3.919 13 C -0.025 4.025 14 C -0.222 4.222 15 C -0.171 4.171 16 C -0.035 4.035 17 C -0.088 4.088 18 N -0.166 5.166 19 C -0.033 4.033 20 C -0.082 4.082 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.095 4.095 24 C -0.298 4.298 25 S 0.363 5.637 26 O -0.036 6.036 27 H 0.080 0.920 28 H 0.216 0.784 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.179 0.821 32 H 0.173 0.827 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.278 -23.448 -4.049 27.249 hybrid contribution 1.034 0.643 -0.750 1.430 sum 14.312 -22.805 -4.799 27.348 Atomic orbital electron populations 1.70015 1.07063 1.27410 1.35031 1.25715 0.94660 1.00347 0.92582 0.86338 0.80122 0.81215 0.78886 1.19702 1.20411 1.18876 1.20848 0.93661 0.89068 1.54281 0.91278 1.18266 0.87220 0.82080 0.76384 1.90613 1.13981 1.86515 1.55019 1.46283 1.08909 1.03717 1.83234 1.19451 0.89956 0.79244 1.03286 1.23309 0.98597 0.97102 0.83531 1.21583 1.01639 0.98779 1.00229 1.21808 1.02105 1.01218 0.91972 1.18819 0.99456 0.94494 0.90692 1.23813 0.97799 0.96741 0.90480 1.66678 1.21419 1.23293 1.05251 1.19180 0.95820 0.92937 0.95395 1.20565 0.98348 0.98269 0.91009 1.20749 0.96383 0.95073 1.00628 1.21175 0.99223 0.99333 0.92531 1.20349 0.97378 0.96399 0.95388 1.23849 1.05786 1.03992 0.96218 1.84767 1.43700 1.31535 1.03725 1.84185 1.46541 1.37985 1.34842 0.92001 0.78386 0.91081 0.89335 0.82144 0.82651 0.84480 0.84577 0.84591 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.86 11.83 55.55 0.66 -22.20 16 2 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 3 Si 0.91 20.11 29.56 -169.99 -5.02 15.08 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.54 -15.25 9.54 -35.63 -0.34 -15.59 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 9 C 0.56 15.70 7.75 -12.99 -0.10 15.60 16 10 O -0.58 -18.50 15.02 5.20 0.08 -18.42 16 11 N -0.76 -17.12 5.54 -62.90 -0.35 -17.47 16 12 C 0.21 3.92 6.20 -5.19 -0.03 3.89 16 13 C 0.03 0.47 6.68 -35.49 -0.24 0.23 16 14 C -0.20 -2.74 10.78 -39.85 -0.43 -3.17 16 15 C -0.15 -1.84 10.59 -39.36 -0.42 -2.25 16 16 C 0.02 0.29 7.24 -36.71 -0.27 0.02 16 17 C 0.19 2.71 7.40 -15.04 -0.11 2.60 16 18 N -0.45 -7.00 10.61 -8.65 -0.09 -7.09 16 19 C 0.09 1.13 6.94 -84.95 -0.59 0.54 16 20 C -0.06 -0.62 10.05 -39.19 -0.39 -1.01 16 21 C -0.11 -0.77 9.93 -40.15 -0.40 -1.17 16 22 C -0.10 -0.65 10.05 -39.58 -0.40 -1.05 16 23 C -0.07 -0.57 10.07 -39.36 -0.40 -0.97 16 24 C -0.18 -1.95 6.53 -38.52 -0.25 -2.21 16 25 S 0.11 1.11 23.08 -107.50 -2.48 -1.38 16 26 O -0.14 -2.45 10.67 4.66 0.05 -2.40 16 27 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 28 H 0.38 7.81 8.44 -40.82 -0.34 7.47 16 29 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 31 H 0.16 1.85 8.06 -52.49 -0.42 1.42 16 32 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -35.81 342.10 -9.74 -45.54 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -3.27 Total: 5.40 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -4.46 Total: -2.21 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.22 Total: -46.76 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.13 Total: -20.82 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.48 Total: -1.38 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.81 -9.74 -45.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153579498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.737 kcal (2) G-P(sol) polarization free energy of solvation -35.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds