Wall clock time and date at job start Tue Mar 31 2020 15:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86799 * 120.00131 * 2 1 4 4 H 1.48499 * 109.47600 * 270.00393 * 3 2 1 5 5 H 1.48508 * 109.47081 * 30.00038 * 3 2 1 6 6 H 1.48498 * 109.47459 * 150.00277 * 3 2 1 7 7 C 1.40047 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00451 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00002 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99963 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00243 * 179.97438 * 9 7 2 12 12 C 1.46501 * 119.99949 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.46992 * 180.02562 * 12 11 9 14 14 C 1.34912 * 125.63527 * 90.02058 * 13 12 11 15 15 C 1.40666 * 107.08443 * 179.71151 * 14 13 12 16 16 C 1.36318 * 106.71898 * 0.40861 * 15 14 13 17 17 C 1.47023 * 125.96465 * 179.85275 * 16 15 14 18 18 N 1.29354 * 124.84506 * 179.71103 * 17 16 15 19 19 C 1.34370 * 117.87953 * 180.02562 * 18 17 16 20 20 C 1.41285 * 128.75531 * 180.02562 * 19 18 17 21 21 C 1.36115 * 120.53741 * 180.25951 * 20 19 18 22 22 C 1.38776 * 120.78403 * 359.50559 * 21 20 19 23 23 C 1.37697 * 120.01041 * 0.47182 * 22 21 20 24 24 C 1.39356 * 120.05437 * 359.78936 * 23 22 21 25 25 S 1.75806 * 124.84754 * 359.76023 * 17 16 15 26 26 O 1.34176 * 125.63837 * 269.98103 * 13 12 11 27 27 H 0.97005 * 120.00036 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99720 * 0.02562 * 11 9 7 29 29 H 1.09001 * 109.46851 * 60.00861 * 12 11 9 30 30 H 1.08997 * 109.47223 * 300.00156 * 12 11 9 31 31 H 1.08000 * 126.45533 * 359.97438 * 14 13 12 32 32 H 1.07997 * 126.64512 * 180.29386 * 15 14 13 33 33 H 1.08002 * 119.72808 * 359.97438 * 20 19 18 34 34 H 1.07995 * 119.60749 * 179.74487 * 21 20 19 35 35 H 1.08001 * 119.99438 * 180.23850 * 22 21 20 36 36 H 1.07999 * 119.97393 * 179.77327 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0465 -1.4000 5 1 1.4382 2.6527 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0016 12 6 1.2164 -4.9164 -0.0010 13 6 2.1957 -6.0618 -0.0018 14 6 2.7070 -6.6595 1.0943 15 6 3.5682 -7.6775 0.6461 16 6 3.5434 -7.6405 -0.7163 17 6 4.2973 -8.5239 -1.6179 18 7 4.2533 -8.4730 -2.9097 19 6 5.0017 -9.3508 -3.5989 20 6 5.1277 -9.4984 -4.9984 21 6 5.9387 -10.4578 -5.5224 22 6 6.6654 -11.3029 -4.6955 23 6 6.5635 -11.1829 -3.3275 24 6 5.7343 -10.2103 -2.7720 25 16 5.3861 -9.8010 -1.0943 26 8 2.7026 -6.6563 -1.0926 27 1 -0.4850 0.8401 -0.0004 28 1 2.9190 -3.6477 -0.0020 29 1 0.5888 -4.9739 -0.8904 30 1 0.5908 -4.9743 0.8896 31 1 2.4920 -6.4071 2.1222 32 1 4.1400 -8.3557 1.2621 33 1 4.5724 -8.8477 -5.6577 34 1 6.0206 -10.5601 -6.5943 35 1 7.3080 -12.0572 -5.1249 36 1 7.1265 -11.8432 -2.6846 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153579498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:26 Heat of formation + Delta-G solvation = 12.171404 kcal Electronic energy + Delta-G solvation = -22923.561423 eV Core-core repulsion = 19271.915604 eV Total energy + Delta-G solvation = -3651.645819 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.80763 -41.29896 -39.43569 -37.94771 -35.64860 -34.55488 -34.27084 -32.36673 -32.16428 -30.47649 -28.77188 -27.17731 -25.22701 -23.99828 -23.05565 -22.58906 -21.83440 -21.25555 -19.64345 -19.45248 -18.35043 -17.63797 -17.43609 -17.25691 -16.62403 -16.32138 -16.05827 -15.78852 -15.72137 -15.47178 -15.07205 -14.88573 -14.34825 -14.09577 -14.01130 -13.73782 -13.50724 -13.20290 -13.09517 -13.03854 -12.88227 -12.72107 -12.63688 -12.02119 -11.97311 -11.26745 -11.14707 -10.96841 -10.95090 -10.44132 -9.94130 -9.63573 -9.24666 -9.10448 -8.31602 -6.89112 -1.10872 -0.21480 0.09288 0.37290 0.42439 1.15269 1.40492 1.41568 1.57277 1.66666 1.72618 2.24744 2.43258 2.56824 2.63515 3.14063 3.40680 3.54785 3.60133 3.79603 3.82613 4.02024 4.22636 4.27079 4.34075 4.49023 4.53602 4.55752 4.71675 4.80511 4.86221 5.03640 5.20632 5.30094 5.31499 5.36490 5.70457 5.81405 5.89864 6.03527 6.19830 6.41775 6.83756 7.42078 8.41398 8.62913 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.020027 B = 0.002229 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.783937 B =12558.336778 C =13229.363630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.028 3.972 3 Si 1.000 3.000 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.249 1.249 7 C -0.570 4.570 8 H 0.087 0.913 9 C 0.540 3.460 10 O -0.627 6.627 11 N -0.752 5.752 12 C 0.212 3.788 13 C -0.005 4.005 14 C -0.177 4.177 15 C -0.135 4.135 16 C 0.010 3.990 17 C 0.151 3.849 18 N -0.493 5.493 19 C 0.045 3.955 20 C -0.084 4.084 21 C -0.097 4.097 22 C -0.083 4.083 23 C -0.078 4.078 24 C -0.194 4.194 25 S 0.165 5.835 26 O -0.174 6.174 27 H 0.276 0.724 28 H 0.395 0.605 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.185 0.815 32 H 0.194 0.806 33 H 0.132 0.868 34 H 0.169 0.831 35 H 0.179 0.821 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.179 -25.691 -4.360 31.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.172 1.172 7 C -0.607 4.607 8 H 0.105 0.895 9 C 0.345 3.655 10 O -0.515 6.515 11 N -0.408 5.408 12 C 0.088 3.912 13 C -0.058 4.058 14 C -0.197 4.197 15 C -0.158 4.158 16 C -0.043 4.043 17 C -0.128 4.128 18 N -0.207 5.207 19 C -0.075 4.075 20 C -0.105 4.105 21 C -0.118 4.118 22 C -0.105 4.105 23 C -0.101 4.101 24 C -0.313 4.313 25 S 0.421 5.579 26 O -0.070 6.070 27 H 0.086 0.914 28 H 0.229 0.771 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.203 0.797 32 H 0.211 0.789 33 H 0.150 0.850 34 H 0.187 0.813 35 H 0.196 0.804 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 17.020 -25.527 -3.924 30.931 hybrid contribution 0.015 0.999 -0.954 1.381 sum 17.035 -24.529 -4.877 30.260 Atomic orbital electron populations 1.70173 1.09474 1.29130 1.36041 1.26985 0.95588 1.04948 0.91174 0.84991 0.78800 0.74965 0.79368 1.18824 1.19484 1.17184 1.21390 0.94738 0.89841 1.54715 0.89500 1.18608 0.86860 0.83879 0.76111 1.90564 1.15940 1.87690 1.57266 1.45926 1.09380 1.03866 1.81668 1.19284 0.90451 0.79055 1.02414 1.22766 1.00517 0.97997 0.84508 1.21896 0.99862 0.97550 1.00360 1.22166 1.01542 1.01002 0.91066 1.19420 0.98838 0.93915 0.92164 1.23973 0.99689 0.98566 0.90620 1.66629 1.22702 1.24907 1.06493 1.19514 0.97272 0.94005 0.96669 1.20815 0.99767 0.99730 0.90181 1.21198 0.94577 0.93450 1.02530 1.21741 0.98001 0.98861 0.91850 1.20837 0.96774 0.95834 0.96655 1.24220 1.06206 1.04502 0.96400 1.84302 1.41537 1.28948 1.03075 1.84122 1.47761 1.39288 1.35798 0.91384 0.77143 0.93334 0.88885 0.79739 0.78905 0.84967 0.81305 0.80382 0.82113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.39 11.83 21.83 0.26 -50.13 16 2 C 0.03 1.60 5.50 85.30 0.47 2.07 16 3 Si 1.00 41.31 29.56 68.60 2.03 43.34 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 7 C -0.57 -32.80 9.54 24.83 0.24 -32.56 16 8 H 0.09 4.51 7.85 -2.91 -0.02 4.48 16 9 C 0.54 31.89 7.75 86.36 0.67 32.56 16 10 O -0.63 -42.32 15.02 -4.31 -0.06 -42.39 16 11 N -0.75 -35.25 5.54 -471.15 -2.61 -37.86 16 12 C 0.21 8.62 6.20 85.63 0.53 9.15 16 13 C -0.01 -0.17 6.68 24.92 0.17 0.00 16 14 C -0.18 -4.64 10.78 22.10 0.24 -4.41 16 15 C -0.14 -3.18 10.59 22.41 0.24 -2.94 16 16 C 0.01 0.31 7.24 24.13 0.17 0.48 16 17 C 0.15 4.36 7.40 87.36 0.65 5.01 16 18 N -0.49 -16.05 10.61 -181.27 -1.92 -17.98 16 19 C 0.05 1.19 6.94 39.93 0.28 1.47 16 20 C -0.08 -1.68 10.05 22.52 0.23 -1.45 16 21 C -0.10 -1.11 9.93 21.90 0.22 -0.90 16 22 C -0.08 -0.72 10.05 22.27 0.22 -0.49 16 23 C -0.08 -0.97 10.07 22.41 0.23 -0.75 16 24 C -0.19 -3.96 6.53 22.96 0.15 -3.81 16 25 S 0.16 3.20 23.08 -56.49 -1.30 1.90 16 26 O -0.17 -6.39 10.67 -6.22 -0.07 -6.46 16 27 H 0.28 15.33 8.29 -92.70 -0.77 14.56 16 28 H 0.40 16.59 8.44 -92.71 -0.78 15.81 16 29 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 31 H 0.19 3.85 8.06 -2.91 -0.02 3.83 16 32 H 0.19 2.92 8.06 -2.91 -0.02 2.89 16 33 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.17 0.78 8.06 -2.91 -0.02 0.75 16 35 H 0.18 0.09 8.06 -2.91 -0.02 0.06 16 36 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -84.39 342.10 1.37 -83.02 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.37 Total: 23.14 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 4.69 Total: 3.41 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -4.28 Total: -105.97 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.13 Total: -48.84 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.30 Total: 1.90 kcal Total: -84.39 1.37 -83.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153579498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.194 kcal (2) G-P(sol) polarization free energy of solvation -84.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds