Wall clock time and date at job start Tue Mar 31 2020 15:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 117.00643 * 2 1 4 4 O 1.20829 * 119.99464 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00428 * 180.02562 * 3 2 1 6 6 N 1.46502 * 109.47309 * 179.97438 * 5 3 2 7 7 C 1.36932 * 120.00073 * 95.42951 * 6 5 3 8 8 H 1.08000 * 119.99642 * 168.76584 * 7 6 5 9 9 C 1.38811 * 120.00268 * 348.48198 * 7 6 5 10 10 N 1.31617 * 119.99839 * 339.11360 * 9 7 6 11 11 Si 1.86803 * 119.99874 * 159.10765 * 9 7 6 12 12 H 1.48494 * 109.46962 * 4.99918 * 11 9 7 13 13 H 1.48496 * 109.46718 * 124.99994 * 11 9 7 14 14 H 1.48499 * 109.46689 * 244.99968 * 11 9 7 15 15 C 1.46495 * 119.99325 * 275.43164 * 6 5 3 16 16 C 1.50704 * 109.47021 * 269.99360 * 15 6 5 17 17 C 1.38259 * 119.98935 * 269.73098 * 16 15 6 18 18 C 1.38200 * 120.00967 * 179.72221 * 17 16 15 19 19 C 1.38368 * 119.98536 * 0.55142 * 18 17 16 20 20 Cl 1.73605 * 120.01014 * 179.69915 * 19 18 17 21 21 C 1.38324 * 119.97804 * 359.72737 * 19 18 17 22 22 N 1.48016 * 120.01117 * 180.02562 * 21 19 18 23 23 O 1.21801 * 120.00634 * 179.97438 * 22 21 19 24 24 O 1.21807 * 120.00004 * 359.97129 * 22 21 19 25 25 C 1.38222 * 119.98291 * 90.00731 * 16 15 6 26 26 H 1.08994 * 109.47597 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46896 * 300.01218 * 1 2 3 28 28 H 1.09005 * 109.46387 * 60.00316 * 1 2 3 29 29 H 1.08993 * 109.47371 * 59.99026 * 5 3 2 30 30 H 1.09010 * 109.46494 * 299.99545 * 5 3 2 31 31 H 0.96996 * 120.00043 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.47945 * 29.99659 * 15 6 5 33 33 H 1.08999 * 109.47117 * 150.00375 * 15 6 5 34 34 H 1.07991 * 119.99594 * 0.02562 * 17 16 15 35 35 H 1.08000 * 120.00182 * 180.24753 * 18 17 16 36 36 H 1.08004 * 119.99155 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9819 2.6796 -0.0011 7 6 4.2841 3.3046 1.1792 8 1 4.7608 4.2737 1.1704 9 6 3.9726 2.6954 2.3869 10 7 3.0515 1.7562 2.4319 11 14 4.8606 3.2083 3.9483 12 1 5.7548 4.3568 3.6545 13 1 3.8651 3.6061 4.9759 14 1 5.6677 2.0696 4.4554 15 6 4.0740 3.4156 -1.2644 16 6 5.4619 3.2669 -1.8324 17 6 6.4455 4.1806 -1.5017 18 6 7.7200 4.0414 -2.0177 19 6 8.0085 2.9939 -2.8746 20 17 9.6072 2.8229 -3.5294 21 6 7.0225 2.0834 -3.2096 22 7 7.3305 0.9623 -4.1257 23 8 6.4624 0.1604 -4.4203 24 8 8.4522 0.8417 -4.5850 25 6 5.7496 2.2204 -2.6883 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 3.9558 0.7807 -0.8907 30 1 3.9564 0.7804 0.8893 31 1 2.8335 1.3307 3.2758 32 1 3.3472 3.0160 -1.9717 33 1 3.8655 4.4705 -1.0863 34 1 6.2192 5.0003 -0.8361 35 1 8.4892 4.7529 -1.7561 36 1 4.9795 1.5098 -2.9501 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153981187.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:33 Heat of formation + Delta-G solvation = -44.144784 kcal Electronic energy + Delta-G solvation = -25847.019998 eV Core-core repulsion = 21747.746405 eV Total energy + Delta-G solvation = -4099.273593 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.25327 -40.97109 -40.57172 -38.15095 -37.67537 -37.44991 -36.51926 -34.06150 -33.04517 -32.08963 -29.93469 -27.86234 -27.58814 -27.48135 -24.35663 -23.79910 -22.61914 -21.60961 -19.95767 -19.72739 -18.87910 -18.65098 -18.17063 -17.86592 -17.36578 -16.94454 -16.83693 -16.61602 -15.69724 -15.54042 -15.19930 -15.04325 -14.68464 -14.12461 -13.99677 -13.50312 -13.35448 -13.20712 -13.10384 -12.79658 -12.74411 -12.67907 -12.54364 -12.42807 -12.25035 -12.22128 -11.99874 -11.91903 -11.47334 -11.43543 -11.19596 -10.64498 -10.56276 -10.00779 -9.11845 -7.96165 -5.30126 -1.26617 -0.19808 0.24725 0.28993 0.78287 1.48920 1.52968 1.60368 1.91060 2.11232 2.34748 2.54217 3.17498 3.25671 3.51300 3.57469 3.79545 3.91547 3.93578 4.31818 4.37306 4.43202 4.47664 4.54548 4.61602 4.65939 4.79562 4.83336 5.03910 5.11102 5.20486 5.29009 5.40975 5.62816 5.88929 6.16080 6.51477 6.95958 7.41179 7.71975 8.09038 9.12266 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012422 B = 0.004321 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.557702 B = 6477.698036 C = 8004.818361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.386 6.386 3 C 0.467 3.533 4 O -0.546 6.546 5 C 0.181 3.819 6 N -0.572 5.572 7 C -0.250 4.250 8 H 0.099 0.901 9 C -0.051 4.051 10 N -0.934 5.934 11 Si 0.966 3.034 12 H -0.258 1.258 13 H -0.308 1.308 14 H -0.295 1.295 15 C 0.180 3.820 16 C -0.079 4.079 17 C -0.027 4.027 18 C -0.099 4.099 19 C 0.001 3.999 20 Cl -0.016 7.016 21 C -0.058 4.058 22 N 0.031 4.969 23 O -0.194 6.194 24 O -0.150 6.150 25 C -0.041 4.041 26 H 0.125 0.875 27 H 0.036 0.964 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.249 0.751 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.172 0.828 35 H 0.187 0.813 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.185 3.347 -9.046 12.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.302 6.302 3 C 0.310 3.690 4 O -0.435 6.435 5 C 0.052 3.948 6 N -0.290 5.290 7 C -0.379 4.379 8 H 0.117 0.883 9 C -0.245 4.245 10 N -0.581 5.581 11 Si 0.796 3.204 12 H -0.181 1.181 13 H -0.236 1.236 14 H -0.222 1.222 15 C 0.054 3.946 16 C -0.083 4.083 17 C -0.046 4.046 18 C -0.117 4.117 19 C -0.028 4.028 20 Cl 0.013 6.987 21 C -0.142 4.142 22 N 0.547 4.453 23 O -0.401 6.401 24 O -0.370 6.370 25 C -0.061 4.061 26 H 0.143 0.857 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.189 0.811 35 H 0.204 0.796 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.852 4.081 -8.534 11.680 hybrid contribution -0.214 -0.424 0.877 0.997 sum 6.638 3.657 -7.657 10.773 Atomic orbital electron populations 1.23195 0.77306 1.04281 1.00903 1.86515 1.23402 1.35373 1.84957 1.25761 0.94051 0.80206 0.69006 1.90441 1.67688 1.37644 1.47709 1.20563 0.84825 0.87021 1.02364 1.44137 1.74754 1.07583 1.02554 1.19722 1.31353 1.03625 0.83236 0.88345 1.25476 0.98417 1.00045 1.00590 1.70034 1.31344 1.31088 1.25663 0.85218 0.77848 0.77786 0.79593 1.18132 1.23566 1.22197 1.19913 0.89555 0.98170 0.86994 1.21016 1.00024 0.93255 0.93970 1.21826 0.90660 0.97898 0.94167 1.21519 0.98799 0.96397 0.95022 1.20928 0.87441 0.96008 0.98397 1.98444 1.19303 1.97036 1.83906 1.20953 0.97400 0.92768 1.03121 1.43706 1.00264 1.01464 0.99900 1.94537 1.42205 1.38779 1.64578 1.94555 1.07752 1.79925 1.54748 1.20987 0.93439 0.97853 0.93787 0.85707 0.94506 0.92604 0.90572 0.87718 0.94165 0.92230 0.90037 0.81099 0.79590 0.82887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.22 10.56 113.37 1.20 2.42 16 2 O -0.39 -15.95 10.56 -51.39 -0.54 -16.49 16 3 C 0.47 21.52 6.31 71.24 0.45 21.97 16 4 O -0.55 -28.19 16.13 21.95 0.35 -27.84 16 5 C 0.18 7.81 5.49 85.63 0.47 8.28 16 6 N -0.57 -23.78 2.01 -710.69 -1.43 -25.21 16 7 C -0.25 -11.47 9.71 84.03 0.82 -10.65 16 8 H 0.10 4.12 7.91 -2.91 -0.02 4.10 16 9 C -0.05 -2.52 4.96 84.86 0.42 -2.10 16 10 N -0.93 -50.14 9.25 21.65 0.20 -49.94 16 11 Si 0.97 40.89 29.60 68.60 2.03 42.92 16 12 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 13 H -0.31 -13.77 7.11 99.48 0.71 -13.06 16 14 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 15 C 0.18 5.78 5.78 85.64 0.50 6.27 16 16 C -0.08 -2.08 5.46 -19.86 -0.11 -2.19 16 17 C -0.03 -0.56 9.70 22.27 0.22 -0.35 16 18 C -0.10 -1.85 9.83 22.29 0.22 -1.63 16 19 C 0.00 0.02 6.32 22.32 0.14 0.16 16 20 Cl -0.02 -0.37 25.94 -2.72 -0.07 -0.44 16 21 C -0.06 -1.62 6.85 36.40 0.25 -1.37 16 22 N 0.03 0.99 4.45 -46.41 -0.21 0.78 16 23 O -0.19 -6.47 18.45 18.88 0.35 -6.12 16 24 O -0.15 -4.74 16.02 18.88 0.30 -4.44 16 25 C -0.04 -1.11 9.21 22.27 0.21 -0.91 16 26 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 27 H 0.04 1.32 8.13 -2.39 -0.02 1.30 16 28 H 0.06 1.72 8.13 -2.38 -0.02 1.70 16 29 H 0.08 2.79 8.11 -2.39 -0.02 2.77 16 30 H 0.11 5.08 5.99 -2.38 -0.01 5.07 16 31 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 32 H 0.06 1.91 8.02 -2.39 -0.02 1.89 16 33 H 0.08 2.49 7.98 -2.39 -0.02 2.48 16 34 H 0.17 2.94 8.06 -2.92 -0.02 2.92 16 35 H 0.19 2.20 8.06 -2.91 -0.02 2.17 16 36 H 0.15 4.16 7.61 -2.91 -0.02 4.14 16 Total: -1.00 -63.94 338.40 6.89 -57.06 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 1.13 Total: 9.82 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: 4.77 Total: 19.90 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -1.44 Total: -74.37 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: 0.46 Total: -54.89 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.07 Total: -0.44 kcal Total: -63.94 6.89 -57.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153981187.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.913 kcal (2) G-P(sol) polarization free energy of solvation -63.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds