Wall clock time and date at job start Tue Mar 31 2020 15:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99911 * 2 1 4 4 C 1.52998 * 109.47061 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.47029 * 68.06458 * 4 3 2 6 6 C 1.46905 * 110.99636 * 157.93936 * 5 4 3 7 7 C 1.50695 * 109.46934 * 287.92806 * 6 5 4 8 8 H 1.07994 * 120.00542 * 3.37826 * 7 6 5 9 9 C 1.37881 * 119.99545 * 183.37144 * 7 6 5 10 10 N 1.31516 * 119.99649 * 180.02562 * 9 7 6 11 11 Si 1.86794 * 120.00139 * 0.02562 * 9 7 6 12 12 H 1.48495 * 109.47301 * 90.00240 * 11 9 7 13 13 H 1.48507 * 109.46970 * 209.99736 * 11 9 7 14 14 H 1.48502 * 109.47268 * 329.99685 * 11 9 7 15 15 C 1.46904 * 110.99779 * 281.89029 * 5 4 3 16 16 C 1.50699 * 109.46969 * 164.74054 * 15 5 4 17 17 C 1.38234 * 120.41346 * 270.04309 * 16 15 5 18 18 N 1.31855 * 120.78542 * 179.97438 * 17 16 15 19 19 C 1.31875 * 121.73628 * 359.97438 * 18 17 16 20 20 C 1.38285 * 120.75012 * 359.97438 * 19 18 17 21 21 Br 1.89095 * 120.42650 * 180.02562 * 20 19 18 22 22 C 1.38607 * 120.41598 * 90.00181 * 16 15 5 23 23 H 1.08994 * 109.47495 * 60.00115 * 1 2 3 24 24 H 1.08996 * 109.47240 * 180.02562 * 1 2 3 25 25 H 1.09010 * 109.46888 * 299.99873 * 1 2 3 26 26 H 1.08995 * 109.47755 * 60.00233 * 3 2 1 27 27 H 1.09008 * 109.46948 * 299.99921 * 3 2 1 28 28 H 1.08998 * 109.46963 * 308.06579 * 4 3 2 29 29 H 1.09004 * 109.47163 * 188.06164 * 4 3 2 30 30 H 1.08999 * 109.47414 * 47.93794 * 6 5 4 31 31 H 1.09003 * 109.46555 * 167.93174 * 6 5 4 32 32 H 0.97004 * 119.99655 * 179.97438 * 10 9 7 33 33 H 1.08992 * 109.47022 * 44.73565 * 15 5 4 34 34 H 1.09005 * 109.47041 * 284.73813 * 15 5 4 35 35 H 1.08000 * 119.60576 * 0.02562 * 17 16 15 36 36 H 1.07996 * 119.62701 * 179.97438 * 19 18 17 37 37 H 1.08007 * 120.79141 * 0.03926 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9822 0.6304 -1.2857 6 6 5.3872 0.9713 -1.5460 7 6 5.4950 2.4369 -1.8796 8 1 4.6172 3.0650 -1.8433 9 6 6.7144 2.9760 -2.2309 10 7 6.8086 4.2552 -2.5215 11 14 8.2326 1.8896 -2.2941 12 1 8.3740 1.3153 -3.6562 13 1 9.4347 2.6996 -1.9713 14 1 8.0962 0.7903 -1.3051 15 6 3.7758 -0.8233 -1.3323 16 6 3.8837 -1.3005 -2.7576 17 6 2.7632 -1.3504 -3.5656 18 7 2.8493 -1.7662 -4.8139 19 6 3.9965 -2.1482 -5.3403 20 6 5.1599 -2.1246 -4.5931 21 35 6.8001 -2.6737 -5.3573 22 6 5.1078 -1.6941 -3.2751 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.6887 1.8464 0.8899 27 1 1.6885 1.8464 -0.8901 28 1 3.8479 0.5242 0.8082 29 1 3.9780 2.1703 0.1435 30 1 5.9837 0.7555 -0.6596 31 1 5.7552 0.3798 -2.3844 32 1 7.6666 4.6346 -2.7684 33 1 2.7862 -1.0624 -0.9429 34 1 4.5342 -1.3176 -0.7252 35 1 1.8060 -1.0443 -3.1700 36 1 4.0279 -2.4832 -6.3665 37 1 6.0000 -1.6657 -2.6670 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158669560.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:13 Heat of formation + Delta-G solvation = 1.609739 kcal Electronic energy + Delta-G solvation = -20442.201911 eV Core-core repulsion = 17266.317791 eV Total energy + Delta-G solvation = -3175.884119 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.14654 -38.10849 -36.40185 -32.98659 -32.78533 -32.18969 -29.60802 -29.48011 -27.76997 -26.30789 -24.71789 -23.36793 -22.14975 -21.70184 -19.95758 -16.99950 -16.97417 -16.52790 -16.22633 -15.79918 -15.15145 -14.86414 -14.46979 -14.31115 -13.79010 -13.58388 -13.31460 -13.03323 -12.57617 -12.40319 -12.12514 -11.84960 -11.62673 -11.38252 -11.20771 -11.09515 -10.82961 -10.58355 -10.40543 -10.25135 -9.93226 -9.48395 -9.41810 -9.35482 -9.24201 -8.67812 -8.59693 -7.48531 -6.09452 -4.06562 1.05317 1.32762 1.61367 3.25871 3.32337 3.34332 3.79392 3.98632 4.38280 4.54294 4.72733 4.91252 4.96830 5.12489 5.23384 5.26463 5.32289 5.41174 5.59124 5.64872 5.66874 5.70050 5.76404 5.89502 6.00629 6.19863 6.23690 6.37200 6.48847 6.70621 6.74524 6.86682 7.33884 7.54784 7.83593 7.92174 7.99031 8.59989 8.98917 9.52560 11.03593 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.009531 B = 0.006145 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.037957 B = 4555.714631 C = 6954.006305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.066 3.934 4 C 0.064 3.936 5 N -0.518 5.518 6 C 0.157 3.843 7 C -0.508 4.508 8 H 0.081 0.919 9 C 0.071 3.929 10 N -0.898 5.898 11 Si 0.865 3.135 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.268 1.268 15 C 0.084 3.916 16 C -0.099 4.099 17 C 0.132 3.868 18 N -0.479 5.479 19 C 0.121 3.879 20 C -0.144 4.144 21 Br -0.047 7.047 22 C -0.040 4.040 23 H 0.040 0.960 24 H 0.079 0.921 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.032 0.968 29 H 0.104 0.896 30 H -0.011 1.011 31 H 0.026 0.974 32 H 0.264 0.736 33 H 0.109 0.891 34 H 0.033 0.967 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.560 -14.492 -0.207 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.310 6.310 3 C -0.010 4.010 4 C -0.064 4.064 5 N -0.242 5.242 6 C 0.031 3.969 7 C -0.546 4.546 8 H 0.099 0.901 9 C -0.131 4.131 10 N -0.537 5.537 11 Si 0.692 3.308 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.192 1.192 15 C -0.045 4.045 16 C -0.102 4.102 17 C -0.025 4.025 18 N -0.187 5.187 19 C -0.038 4.038 20 C -0.226 4.226 21 Br 0.038 6.962 22 C -0.068 4.068 23 H 0.059 0.941 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.122 0.878 30 H 0.006 0.994 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.127 0.873 34 H 0.051 0.949 35 H 0.179 0.821 36 H 0.176 0.824 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.746 -14.515 -1.422 16.069 hybrid contribution 1.774 -0.294 1.141 2.130 sum -4.972 -14.809 -0.281 15.623 Atomic orbital electron populations 1.22679 0.82093 1.02065 0.99758 1.87819 1.18882 1.29060 1.95273 1.22747 0.94307 0.83917 1.00072 1.22102 0.92286 1.01802 0.90219 1.61937 1.23649 1.07799 1.30856 1.20302 0.83487 0.98193 0.94962 1.20980 0.96016 0.91715 1.45915 0.90141 1.24868 0.98539 0.94804 0.94854 1.69884 1.25311 1.11696 1.46798 0.87002 0.83397 0.81160 0.79215 1.19750 1.21074 1.19237 1.21303 1.03092 0.90113 0.89963 1.20940 0.92996 0.97618 0.98682 1.22759 0.98827 0.92528 0.88374 1.67821 1.26605 1.10976 1.13323 1.22681 0.86414 0.95207 0.99510 1.22861 0.93409 1.08825 0.97469 1.96690 1.26902 1.89478 1.83164 1.21553 0.98631 0.93317 0.93260 0.94129 0.90250 0.94620 0.93626 0.92111 0.94930 0.87787 0.99364 0.95611 0.92636 0.87329 0.94861 0.82106 0.82368 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -5.33 7.93 -35.23 -0.28 -5.61 16 3 C 0.07 0.96 6.25 37.16 0.23 1.19 16 4 C 0.06 1.11 5.35 -3.82 -0.02 1.09 16 5 N -0.52 -10.15 4.32 -237.51 -1.03 -11.17 16 6 C 0.16 3.63 3.62 -4.98 -0.02 3.61 16 7 C -0.51 -13.99 8.93 -34.44 -0.31 -14.30 16 8 H 0.08 2.40 7.88 -52.49 -0.41 1.99 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 10 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 11 Si 0.87 21.29 27.40 -169.99 -4.66 16.63 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.28 6.64 56.52 0.38 -5.90 16 15 C 0.08 1.38 4.94 -4.97 -0.02 1.35 16 16 C -0.10 -1.63 5.08 -104.49 -0.53 -2.16 16 17 C 0.13 2.07 10.86 -17.54 -0.19 1.88 16 18 N -0.48 -7.60 10.36 -13.23 -0.14 -7.74 16 19 C 0.12 1.80 10.95 -17.52 -0.19 1.60 16 20 C -0.14 -2.24 6.25 -39.37 -0.25 -2.48 16 21 Br -0.05 -0.65 33.74 -68.01 -2.29 -2.95 16 22 C -0.04 -0.66 8.00 -39.25 -0.31 -0.97 16 23 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.32 8.14 -51.92 -0.42 -0.10 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 28 H 0.03 0.54 7.96 -51.93 -0.41 0.12 16 29 H 0.10 2.00 6.99 -51.93 -0.36 1.64 16 30 H -0.01 -0.27 7.34 -51.93 -0.38 -0.65 16 31 H 0.03 0.61 4.61 -51.93 -0.24 0.37 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.11 1.65 5.10 -51.93 -0.26 1.39 16 34 H 0.03 0.54 8.02 -51.93 -0.42 0.13 16 35 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 36 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.14 2.29 7.61 -52.48 -0.40 1.89 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -30.42 325.91 -8.32 -38.74 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.01 Total: -0.60 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -0.60 Total: -5.82 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.39 Total: -45.32 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.28 Total: -5.61 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.66 Total: 16.63 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -2.29 Total: -2.95 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.42 -8.32 -38.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158669560.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.350 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds