Wall clock time and date at job start Tue Mar 31 2020 15:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00011 * 2 1 4 4 H 1.48498 * 109.47303 * 270.00151 * 3 2 1 5 5 H 1.48503 * 109.46908 * 29.99951 * 3 2 1 6 6 H 1.48496 * 109.47148 * 149.99744 * 3 2 1 7 7 C 1.37875 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99551 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47051 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47249 * 179.97438 * 10 9 7 12 12 S 1.81403 * 109.47460 * 179.97438 * 11 10 9 13 13 C 1.81399 * 103.00193 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.46938 * 180.02562 * 13 12 11 15 15 C 1.38259 * 119.93788 * 270.02085 * 14 13 12 16 16 C 1.38290 * 120.09713 * 180.02562 * 15 14 13 17 17 Cl 1.73596 * 119.97939 * 179.97438 * 16 15 14 18 18 C 1.38801 * 120.04540 * 359.94923 * 16 15 14 19 19 C 1.38925 * 119.81759 * 359.94943 * 18 16 15 20 20 C 1.38181 * 119.94009 * 90.00106 * 14 13 12 21 21 O 1.36115 * 120.78447 * 180.16648 * 19 18 16 22 22 C 1.43179 * 116.70849 * 342.69675 * 21 19 18 23 23 C 1.53457 * 108.24237 * 46.22754 * 22 21 19 24 24 O 1.36135 * 119.39530 * 179.69061 * 18 16 15 25 25 H 0.96999 * 119.99570 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47054 * 59.99310 * 9 7 2 27 27 H 1.09002 * 109.46959 * 299.98959 * 9 7 2 28 28 H 1.09004 * 109.47417 * 59.99538 * 10 9 7 29 29 H 1.08997 * 109.47236 * 299.99807 * 10 9 7 30 30 H 1.09003 * 109.46865 * 60.00481 * 11 10 9 31 31 H 1.08997 * 109.47231 * 300.00284 * 11 10 9 32 32 H 1.09001 * 109.46542 * 60.00155 * 13 12 11 33 33 H 1.08993 * 109.46986 * 300.00355 * 13 12 11 34 34 H 1.08001 * 119.95365 * 0.03734 * 15 14 13 35 35 H 1.07998 * 119.95286 * 359.97438 * 20 14 13 36 36 H 1.08999 * 109.70690 * 165.91326 * 22 21 19 37 37 H 1.09005 * 109.70559 * 286.54051 * 22 21 19 38 38 H 1.08999 * 109.71188 * 180.59644 * 23 22 21 39 39 H 1.08998 * 109.73749 * 59.99761 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 16 2.6591 -6.3659 0.0004 13 6 1.5808 -7.8247 0.0005 14 6 2.4248 -9.0731 0.0005 15 6 2.8116 -9.6445 -1.1976 16 6 3.5856 -10.7905 -1.2014 17 17 4.0689 -11.5058 -2.7075 18 6 3.9768 -11.3689 -0.0018 19 6 3.5895 -10.7928 1.2016 20 6 2.8111 -9.6444 1.1980 21 8 3.9648 -11.3416 2.3893 22 6 4.4242 -12.6972 2.3553 23 6 5.4146 -12.8397 1.1918 24 8 4.7334 -12.5005 -0.0210 25 1 -0.4849 0.8401 0.0004 26 1 0.6246 -2.5570 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8721 -3.6043 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 0.8534 -5.0451 -0.8887 31 1 0.8540 -5.0446 0.8913 32 1 0.9514 -7.8111 -0.8893 33 1 0.9520 -7.8115 0.8907 34 1 2.5089 -9.1952 -2.1319 35 1 2.5080 -9.1953 2.1322 36 1 4.9223 -12.9402 3.2939 37 1 3.5787 -13.3681 2.2027 38 1 5.7722 -13.8679 1.1372 39 1 6.2574 -12.1649 1.3411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161136249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:48 Heat of formation + Delta-G solvation = -74.481102 kcal Electronic energy + Delta-G solvation = -21795.265776 eV Core-core repulsion = 18240.969916 eV Total energy + Delta-G solvation = -3554.295860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67427 -38.57454 -37.73657 -36.61275 -34.45288 -32.74142 -32.02186 -31.13583 -29.69709 -27.60333 -26.97872 -24.81520 -23.42327 -22.97694 -21.08533 -20.21749 -19.04576 -17.86447 -17.67087 -16.47092 -15.99314 -15.83977 -15.56933 -15.21195 -14.88869 -14.85835 -14.58920 -14.55730 -14.52353 -13.84322 -13.57680 -13.07335 -12.75266 -12.49443 -12.38868 -12.21782 -11.78356 -11.69648 -11.50338 -11.20522 -11.13562 -10.95198 -10.87922 -10.83863 -10.50449 -9.82065 -9.79282 -9.31020 -9.11446 -8.80603 -8.39483 -8.36786 -7.46031 -6.01913 -4.04302 0.61849 0.80266 1.80336 1.94561 2.56308 2.72759 2.83391 3.29941 3.32274 3.38357 3.42395 3.75491 4.23633 4.31449 4.33954 4.45523 4.47875 4.65978 4.77571 4.88995 4.95262 4.99911 5.33549 5.34090 5.38872 5.49949 5.50464 5.62136 5.63438 6.06366 6.10123 6.12736 6.39738 6.55263 6.71591 6.90377 7.01754 7.63176 7.75287 7.97116 8.39024 9.02154 9.59938 11.09398 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.001999 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.702523 B =14005.115730 C =14575.419671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.095 4.095 11 C -0.075 4.075 12 S -0.265 6.265 13 C -0.049 4.049 14 C -0.048 4.048 15 C -0.089 4.089 16 C -0.030 4.030 17 Cl -0.050 7.050 18 C 0.058 3.942 19 C 0.063 3.937 20 C -0.090 4.090 21 O -0.300 6.300 22 C 0.019 3.981 23 C 0.019 3.981 24 O -0.296 6.296 25 H 0.261 0.739 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.079 0.921 38 H 0.124 0.876 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.902 -30.404 1.981 31.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.134 4.134 11 C -0.223 4.223 12 S -0.034 6.034 13 C -0.197 4.197 14 C -0.050 4.050 15 C -0.110 4.110 16 C -0.058 4.058 17 Cl -0.021 7.021 18 C 0.011 3.989 19 C 0.017 3.983 20 C -0.111 4.111 21 O -0.215 6.215 22 C -0.056 4.056 23 C -0.057 4.057 24 O -0.210 6.210 25 H 0.070 0.930 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.142 0.858 37 H 0.097 0.903 38 H 0.142 0.858 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.919 -30.344 1.884 31.417 hybrid contribution -0.739 0.641 0.001 0.979 sum 7.180 -29.702 1.885 30.616 Atomic orbital electron populations 1.69965 1.06058 1.26661 1.50842 1.25026 0.94878 0.99312 0.95268 0.86568 0.79854 0.83312 0.78139 1.20624 1.21218 1.19824 1.21224 0.93135 0.90862 1.50635 0.92543 1.19104 0.93796 0.90842 0.97395 1.21467 0.99166 0.91143 1.01620 1.23668 0.98912 0.95275 1.04454 1.87184 1.17939 1.00228 1.98092 1.22206 0.98653 0.92613 1.06197 1.18876 0.99024 0.95277 0.91802 1.20776 0.97498 0.93463 0.99218 1.20008 1.03785 0.96430 0.85529 1.98373 1.90668 1.83173 1.29897 1.18461 0.97761 0.90618 0.92071 1.18590 0.99510 0.96478 0.83692 1.20401 0.97052 0.94403 0.99239 1.86369 1.80334 1.27934 1.26855 1.23679 0.98572 0.82155 1.01199 1.23694 0.94554 1.03893 0.83509 1.86394 1.60426 1.38458 1.35723 0.92975 0.96424 0.96417 0.92381 0.92359 0.90434 0.90446 0.88747 0.88802 0.83590 0.83768 0.85766 0.90269 0.85769 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.70 4.97 -27.88 -0.14 0.56 16 10 C -0.09 -1.96 5.16 -26.73 -0.14 -2.09 16 11 C -0.08 -1.25 5.94 37.16 0.22 -1.03 16 12 S -0.26 -3.95 21.72 -107.50 -2.33 -6.29 16 13 C -0.05 -0.55 6.06 36.00 0.22 -0.33 16 14 C -0.05 -0.53 5.14 -104.64 -0.54 -1.06 16 15 C -0.09 -0.96 9.47 -39.55 -0.37 -1.33 16 16 C -0.03 -0.34 6.33 -39.35 -0.25 -0.59 16 17 Cl -0.05 -0.53 28.46 -51.86 -1.48 -2.01 16 18 C 0.06 0.64 6.49 -39.12 -0.25 0.39 16 19 C 0.06 0.68 6.49 -39.14 -0.25 0.43 16 20 C -0.09 -0.98 9.61 -39.42 -0.38 -1.36 16 21 O -0.30 -2.92 10.42 -32.90 -0.34 -3.27 16 22 C 0.02 0.11 7.26 37.39 0.27 0.38 16 23 C 0.02 0.11 7.26 37.39 0.27 0.38 16 24 O -0.30 -2.92 9.84 -32.97 -0.32 -3.25 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.09 0.93 8.09 -51.92 -0.42 0.51 16 33 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.12 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 359.10 15.07 5.41 5.41 Total: -1.00 -31.95 359.10 -10.56 -42.51 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -5.45 Total: -4.56 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -1.75 Total: -19.18 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.67 Total: -6.51 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -3.95 SS G_CDS: -2.33 Total: -6.29 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.48 Total: -2.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.95 -10.56 -42.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161136249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.968 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds