Wall clock time and date at job start Tue Mar 31 2020 15:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00011 * 2 1 4 4 H 1.48498 * 109.47303 * 270.00151 * 3 2 1 5 5 H 1.48503 * 109.46908 * 29.99951 * 3 2 1 6 6 H 1.48496 * 109.47148 * 149.99744 * 3 2 1 7 7 C 1.37875 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99551 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47051 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47249 * 179.97438 * 10 9 7 12 12 S 1.81403 * 109.47460 * 179.97438 * 11 10 9 13 13 C 1.81399 * 103.00193 * 180.02562 * 12 11 10 14 14 C 1.50695 * 109.46938 * 180.02562 * 13 12 11 15 15 C 1.38259 * 119.93788 * 270.02085 * 14 13 12 16 16 C 1.38290 * 120.09713 * 180.02562 * 15 14 13 17 17 Cl 1.73596 * 119.97939 * 179.97438 * 16 15 14 18 18 C 1.38801 * 120.04540 * 359.94923 * 16 15 14 19 19 C 1.38925 * 119.81759 * 359.94943 * 18 16 15 20 20 C 1.38181 * 119.94009 * 90.00106 * 14 13 12 21 21 O 1.36115 * 120.78447 * 180.16648 * 19 18 16 22 22 C 1.43179 * 116.70849 * 342.69675 * 21 19 18 23 23 C 1.53457 * 108.24237 * 46.22754 * 22 21 19 24 24 O 1.36135 * 119.39530 * 179.69061 * 18 16 15 25 25 H 0.96999 * 119.99570 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47054 * 59.99310 * 9 7 2 27 27 H 1.09002 * 109.46959 * 299.98959 * 9 7 2 28 28 H 1.09004 * 109.47417 * 59.99538 * 10 9 7 29 29 H 1.08997 * 109.47236 * 299.99807 * 10 9 7 30 30 H 1.09003 * 109.46865 * 60.00481 * 11 10 9 31 31 H 1.08997 * 109.47231 * 300.00284 * 11 10 9 32 32 H 1.09001 * 109.46542 * 60.00155 * 13 12 11 33 33 H 1.08993 * 109.46986 * 300.00355 * 13 12 11 34 34 H 1.08001 * 119.95365 * 0.03734 * 15 14 13 35 35 H 1.07998 * 119.95286 * 359.97438 * 20 14 13 36 36 H 1.08999 * 109.70690 * 165.91326 * 22 21 19 37 37 H 1.09005 * 109.70559 * 286.54051 * 22 21 19 38 38 H 1.08999 * 109.71188 * 180.59644 * 23 22 21 39 39 H 1.08998 * 109.73749 * 59.99761 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 16 2.6591 -6.3659 0.0004 13 6 1.5808 -7.8247 0.0005 14 6 2.4248 -9.0731 0.0005 15 6 2.8116 -9.6445 -1.1976 16 6 3.5856 -10.7905 -1.2014 17 17 4.0689 -11.5058 -2.7075 18 6 3.9768 -11.3689 -0.0018 19 6 3.5895 -10.7928 1.2016 20 6 2.8111 -9.6444 1.1980 21 8 3.9648 -11.3416 2.3893 22 6 4.4242 -12.6972 2.3553 23 6 5.4146 -12.8397 1.1918 24 8 4.7334 -12.5005 -0.0210 25 1 -0.4849 0.8401 0.0004 26 1 0.6246 -2.5570 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8721 -3.6043 0.8905 29 1 2.8719 -3.6044 -0.8894 30 1 0.8534 -5.0451 -0.8887 31 1 0.8540 -5.0446 0.8913 32 1 0.9514 -7.8111 -0.8893 33 1 0.9520 -7.8115 0.8907 34 1 2.5089 -9.1952 -2.1319 35 1 2.5080 -9.1953 2.1322 36 1 4.9223 -12.9402 3.2939 37 1 3.5787 -13.3681 2.2027 38 1 5.7722 -13.8679 1.1372 39 1 6.2574 -12.1649 1.3411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161136249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:47 Heat of formation + Delta-G solvation = -90.913966 kcal Electronic energy + Delta-G solvation = -21795.978358 eV Core-core repulsion = 18240.969916 eV Total energy + Delta-G solvation = -3555.008443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.36242 -39.32341 -38.42914 -37.41460 -36.33860 -34.02643 -33.48498 -31.85530 -30.35666 -29.41009 -27.87111 -25.59482 -25.16331 -23.81870 -22.17897 -21.58504 -19.75426 -18.58930 -18.55572 -18.31244 -17.05433 -16.67963 -16.54695 -16.37266 -16.14836 -15.87956 -15.61887 -15.44313 -15.29058 -15.02831 -14.45423 -14.23559 -14.07040 -13.91992 -13.41279 -13.29239 -13.07108 -12.88865 -12.75663 -12.71735 -12.41078 -12.08952 -12.02071 -11.88028 -11.63107 -11.58783 -11.36103 -11.13460 -10.84615 -10.55378 -9.60485 -9.19246 -8.63401 -8.20527 -6.31199 -0.24670 -0.00370 0.86907 1.00791 1.40994 1.41924 1.53280 1.66114 1.93718 2.12991 2.41571 2.48611 3.12813 3.20882 3.49338 3.62543 3.84906 3.95622 4.00333 4.08554 4.11125 4.14218 4.16807 4.46081 4.53842 4.57663 4.61755 4.63311 4.73807 4.85010 4.85454 5.00696 5.15682 5.25858 5.32202 5.50374 5.70369 5.74428 5.83601 6.20889 6.23665 6.84504 7.37813 8.91054 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.001999 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.702523 B =14005.115730 C =14575.419671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.031 3.969 10 C -0.081 4.081 11 C -0.068 4.068 12 S -0.287 6.287 13 C -0.035 4.035 14 C -0.056 4.056 15 C -0.090 4.090 16 C -0.045 4.045 17 Cl -0.050 7.050 18 C 0.055 3.945 19 C 0.056 3.944 20 C -0.095 4.095 21 O -0.315 6.315 22 C 0.014 3.986 23 C 0.012 3.988 24 O -0.310 6.310 25 H 0.264 0.736 26 H -0.003 1.003 27 H -0.002 1.002 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.085 0.915 38 H 0.158 0.842 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.830 -31.601 2.460 32.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.120 4.120 11 C -0.216 4.216 12 S -0.057 6.057 13 C -0.182 4.182 14 C -0.058 4.058 15 C -0.111 4.111 16 C -0.072 4.072 17 Cl -0.021 7.021 18 C 0.007 3.993 19 C 0.011 3.989 20 C -0.116 4.116 21 O -0.230 6.230 22 C -0.060 4.060 23 C -0.062 4.062 24 O -0.225 6.225 25 H 0.073 0.927 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.174 0.826 37 H 0.103 0.897 38 H 0.175 0.825 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.859 -31.550 2.367 32.856 hybrid contribution -0.981 0.822 -0.104 1.284 sum 7.878 -30.728 2.263 31.802 Atomic orbital electron populations 1.70084 1.07652 1.27809 1.51575 1.25953 0.95815 1.03259 0.94705 0.85461 0.78655 0.78512 0.78521 1.19749 1.20589 1.18936 1.21671 0.93518 0.92412 1.50680 0.92426 1.18981 0.94171 0.92306 0.95342 1.21164 0.98013 0.91714 1.01132 1.23372 0.98823 0.94388 1.05060 1.87209 1.18744 1.01499 1.98214 1.22250 0.97944 0.90197 1.07803 1.18847 0.99628 0.95310 0.91969 1.20915 0.97186 0.93360 0.99619 1.20160 1.04370 0.96899 0.85779 1.98366 1.90706 1.83200 1.29840 1.18593 0.97687 0.90902 0.92074 1.18675 0.99513 0.96613 0.84144 1.20570 0.96953 0.94515 0.99534 1.86344 1.80374 1.29936 1.26365 1.24026 0.98952 0.80362 1.02699 1.24043 0.94189 1.05739 0.82261 1.86374 1.60385 1.37817 1.37892 0.92704 0.98421 0.98404 0.92815 0.92784 0.89865 0.89879 0.87182 0.87278 0.82702 0.83077 0.82593 0.89657 0.82472 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 9 C 0.03 1.61 4.97 29.85 0.15 1.76 16 10 C -0.08 -3.39 5.16 30.59 0.16 -3.23 16 11 C -0.07 -2.26 5.94 71.98 0.43 -1.83 16 12 S -0.29 -8.28 21.72 -56.49 -1.23 -9.51 16 13 C -0.03 -0.71 6.06 71.23 0.43 -0.28 16 14 C -0.06 -1.14 5.14 -19.87 -0.10 -1.25 16 15 C -0.09 -1.85 9.47 22.29 0.21 -1.64 16 16 C -0.04 -0.97 6.33 22.42 0.14 -0.83 16 17 Cl -0.05 -1.03 28.46 -2.72 -0.08 -1.11 16 18 C 0.05 1.17 6.49 22.57 0.15 1.31 16 19 C 0.06 1.17 6.49 22.55 0.15 1.32 16 20 C -0.10 -1.96 9.61 22.38 0.22 -1.75 16 21 O -0.32 -5.68 10.42 -82.62 -0.86 -6.54 16 22 C 0.01 0.13 7.26 72.14 0.52 0.65 16 23 C 0.01 0.12 7.26 72.14 0.52 0.64 16 24 O -0.31 -5.72 9.84 -82.85 -0.82 -6.54 16 25 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 26 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.00 -0.14 8.14 -2.39 -0.02 -0.15 16 28 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.11 1.93 8.09 -2.39 -0.02 1.91 16 33 H 0.11 1.92 8.08 -2.39 -0.02 1.90 16 34 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 35 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 36 H 0.16 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.16 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -69.05 359.10 4.05 -65.00 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: 1.05 Total: 3.93 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 3.67 Total: -35.65 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.28 Total: -56.12 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -1.68 Total: -13.07 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.23 Total: -9.51 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -69.05 4.05 -65.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161136249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.911 kcal (2) G-P(sol) polarization free energy of solvation -69.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds